pax_global_header 0000666 0000000 0000000 00000000064 15124622627 0014521 g ustar 00root root 0000000 0000000 52 comment=52ac69614d64c87dbb7018bcc615ac43e46671f7
tseemann-any2fasta-52ac696/ 0000775 0000000 0000000 00000000000 15124622627 0015562 5 ustar 00root root 0000000 0000000 tseemann-any2fasta-52ac696/.github/ 0000775 0000000 0000000 00000000000 15124622627 0017122 5 ustar 00root root 0000000 0000000 tseemann-any2fasta-52ac696/.github/workflows/ 0000775 0000000 0000000 00000000000 15124622627 0021157 5 ustar 00root root 0000000 0000000 tseemann-any2fasta-52ac696/.github/workflows/CI.yml 0000664 0000000 0000000 00000001201 15124622627 0022167 0 ustar 00root root 0000000 0000000 name: CI
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
tests:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -el {0}
steps:
- name: Pull code
uses: actions/checkout@v5
- name: Setup conda
uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: any2fasta
environment-file: environment.yml
miniforge-version: latest
channels: conda-forge,bioconda
channel-priority: strict
auto-update-conda: true
- name: Run BATS test suite
run: bats test/test.sh
tseemann-any2fasta-52ac696/.gitignore 0000664 0000000 0000000 00000000531 15124622627 0017551 0 ustar 00root root 0000000 0000000 !Build/
.last_cover_stats
/META.yml
/META.json
/MYMETA.*
*.o
*.pm.tdy
*.bs
# Devel::Cover
cover_db/
# Devel::NYTProf
nytprof.out
# Dizt::Zilla
/.build/
# Module::Build
_build/
Build
Build.bat
# Module::Install
inc/
# ExtUtils::MakeMaker
/blib/
/_eumm/
/*.gz
/Makefile
/Makefile.old
/MANIFEST.bak
/pm_to_blib
/*.zip
# backups
*~
bug/
dev/
tseemann-any2fasta-52ac696/CODE_OF_CONDUCT.md 0000664 0000000 0000000 00000006441 15124622627 0020366 0 ustar 00root root 0000000 0000000 # Contributor Covenant Code of Conduct
## Our Pledge
In the interest of fostering an open and welcoming environment, we as
contributors and maintainers pledge to making participation in our project and
our community a harassment-free experience for everyone, regardless of age, body
size, disability, ethnicity, sex characteristics, gender identity and expression,
level of experience, education, socio-economic status, nationality, personal
appearance, race, religion, or sexual identity and orientation.
## Our Standards
Examples of behavior that contributes to creating a positive environment
include:
* Using welcoming and inclusive language
* Being respectful of differing viewpoints and experiences
* Gracefully accepting constructive criticism
* Focusing on what is best for the community
* Showing empathy towards other community members
Examples of unacceptable behavior by participants include:
* The use of sexualized language or imagery and unwelcome sexual attention or
advances
* Trolling, insulting/derogatory comments, and personal or political attacks
* Public or private harassment
* Publishing others' private information, such as a physical or electronic
address, without explicit permission
* Other conduct which could reasonably be considered inappropriate in a
professional setting
## Our Responsibilities
Project maintainers are responsible for clarifying the standards of acceptable
behavior and are expected to take appropriate and fair corrective action in
response to any instances of unacceptable behavior.
Project maintainers have the right and responsibility to remove, edit, or
reject comments, commits, code, wiki edits, issues, and other contributions
that are not aligned to this Code of Conduct, or to ban temporarily or
permanently any contributor for other behaviors that they deem inappropriate,
threatening, offensive, or harmful.
## Scope
This Code of Conduct applies both within project spaces and in public spaces
when an individual is representing the project or its community. Examples of
representing a project or community include using an official project e-mail
address, posting via an official social media account, or acting as an appointed
representative at an online or offline event. Representation of a project may be
further defined and clarified by project maintainers.
## Enforcement
Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported by contacting the project team at torsten.seemann+coc@gmail.com. All
complaints will be reviewed and investigated and will result in a response that
is deemed necessary and appropriate to the circumstances. The project team is
obligated to maintain confidentiality with regard to the reporter of an incident.
Further details of specific enforcement policies may be posted separately.
Project maintainers who do not follow or enforce the Code of Conduct in good
faith may face temporary or permanent repercussions as determined by other
members of the project's leadership.
## Attribution
This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html
[homepage]: https://www.contributor-covenant.org
For answers to common questions about this code of conduct, see
https://www.contributor-covenant.org/faq
tseemann-any2fasta-52ac696/LICENSE 0000664 0000000 0000000 00000104515 15124622627 0016575 0 ustar 00root root 0000000 0000000 GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc.
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.
tseemann-any2fasta-52ac696/README.md 0000664 0000000 0000000 00000011655 15124622627 0017051 0 ustar 00root root 0000000 0000000 [](https://github.com/tseemann/any2fasta/actions/workflows/CI.yml)
[](https://github.com/tseemann/any2fasta/releases)
[](https://www.gnu.org/licenses/gpl-3.0)

[](https://anaconda.org/bioconda/any2fasta)
# any2fasta
Convert various sequence formats to FASTA
## Quick start
```
% conda install -c bioconda any2fasta
% any2fasta genome.gbk > genome.fasta
% any2fasta seq.gbk.gz > seq.fasta
% any2fasta protein.pdb.bz2 > protein.fasta
```
## Motivation
You may wonder why this tool even exists. Well, I tried to do the right
thing and use established tools like `readseq` and `seqret` from EMBOSS, but
they both mangled IDs containing `|` or `.` characters, and
there is no way to fix this behaviour. This resulted in inconsitences
between my `.gbk` and `.fna` versions of files in my pipelines.
Then you may wonder why I didn't use Bioperl or Biopython. Well they are
heavyweight libraries, and actually very slow at parsing Genbank files.
This script uses only core Perl modules, has no other dependencies, and
runs very quickly.
It supports the following input formats:
1. Genbank flat file, typically `.gb`, `.gbk`, `.gbff` (starts with `LOCUS`)
2. EMBL flat file, typically `.embl`, (starts with `ID`)
3. GFF with sequence, typically `.gff`, `.gff3` (starts with `##gff`)
4. FASTA DNA, typically `.fasta`, `.fa`, `.fna`, `.ffn` (starts with `>`)
5. FASTQ DNA, typically `.fastq`, `.fq` (starts with `@`)
6. CLUSTAL alignments, typically `.clw`, `.clu` (starts with `CLUSTAL` or `MUSCLE`)
7. STOCKHOLM alignments, typically `.sth` (starts with `# STOCKHOLM`)
8. GFA assembly graph, typically `.gfa` (starts with `^[A-Z]\t`)
9. PDB protein data bank structure, typicall `.pdb` (starts with `^HEADER`)
Files may be compressed with:
1. gzip, typically `.gz`
2. bzip2, typically `.bz2`
3. zip, typically `.zip`
plus any other formats supported by
your installed version of Perl's
[`IO::Uncompress::AnyUncompress`](https://perldoc.perl.org/IO::Uncompress::AnyUncompress#DESCRIPTION)
module.
## Installation
`any2fasta` has no dependencies except [Perl 5.10](https://www.perl.org/)
or higher. It only uses core modules, so no CPAN needed.
### Conda
```
% conda install -c bioconda any2fasta
```
### Direct script download
```
% cd /usr/local/bin # choose a folder in your $PATH
% wget https://raw.githubusercontent.com/tseemann/any2fasta/master/any2fasta
% chmod +x any2fasta
```
### Github
```
% git clone https://github.com/tseemann/any2fasta.git
% cp any2fasta/any2fasta $HOME/.local/bin # choose a folder in your $PATH
```
## Test Installation
### Sinple check
```
% ./any2fasta -v
any2fasta 1.0.2
% ./any2fasta -h
NAME
any2fasta 1.0.2
SYNOPSIS
Convert various sequence formats into FASTA
USAGE
any2fasta [options] file.{gb,fa,fq,gff,gfa,clw,sth}[.gz,bz2,zip] > output.fasta
OPTIONS
-h Print this help
-v Print version and exit
-q No output while running, only errors
-k Skip, don't die, on bad input files
-n Replace non-[AGTC] with 'N'
-l Lowercase the sequence
-u Uppercase the sequence
-g Include VERSION from GBK/EMBL files
-s Strip sequence descriptions (FASTA,FASTQ)
END
```
### Extensive test
```
% bats $(dirname $(which any2fasta))/test/test.sh
✓ Script syntax check
✓ Version
...
✓ Multiple sequence with one bad one
✓ Allow skipping over bad files
29 tests, 0 failures, 2 skipped
```
## Examples
```
% any2fasta ref.gbk > ref.fna
% any2fasta in.fasta > out.fasta # should behave like "cat"
% any2fasta prokka.gff > prokka.fna # only if GFF has FASTA appended
% any2fasta - < file.gb > file.fasta # '-' means stdin
% anyfasta genes.gff.gz > genes.ffn # automatically decompresses
% any2fasta 1.gb 2.fa.gz 3.gff.bz2 - > out.fa # multiple files and stdin
% any2fasta R1.fq.gz | bzip2 > R1.fa.bz2 # 'seqtk seq -A' is much faster
% any2fasta -q 23S.clw > 23S.aln # gaps '-' will be preserved
% any2fasta pfam4321.sth > pfam4321.aln # '.' gaps will become '-'
```
## Options
* `-n` replaces any characters that aren't A,C,G,T with N (gaps preserved)
* `-l` will lowercase all the letters
* `-u` will uppercase all the letters
* `-q` will prevent logging messages being printed
* `-k` will warn of bad inputs and continue on. not stop and error
* `-g` will appened the version to the sequence ID
* `-s` removes `desc` from `>id desc` in FASTA,FASTQ,GFF
## Issues
Submit feedback to the [Issue Tracker](https://github.com/tseemann/any2fasta/issues)
## License
[GPL v3](https://raw.githubusercontent.com/tseemann/any2fasta/master/LICENSE)
## Author
[Torsten Seemann](http://tseemann.github.io/)
tseemann-any2fasta-52ac696/any2fasta 0000775 0000000 0000000 00000025117 15124622627 0017406 0 ustar 00root root 0000000 0000000 #!/usr/bin/env perl
use 5.18.0;
use strict;
use warnings;
use Getopt::Std;
use File::Basename;
use IO::Uncompress::AnyUncompress qw(anyuncompress $AnyUncompressError);
use IO::Handle;
#......................................................................................
our $VERSION = "0.8.1";
our $EXE = basename($0);
our $STDIN = '/dev/stdin'; # '-' will be replaced with this
our $URL = 'https://github.com/tseemann/any2fasta';
#......................................................................................
my %aa = (
'ALA' => 'A', 'ARG' => 'R', 'ASN' => 'N', 'ASP' => 'D',
'CYS' => 'C', 'GLU' => 'E', 'GLN' => 'Q', 'GLY' => 'G',
'HIS' => 'H', 'ILE' => 'I', 'LEU' => 'L', 'LYS' => 'K',
'MET' => 'M', 'PHE' => 'F', 'PRO' => 'P', 'SER' => 'S',
'THR' => 'T', 'TRP' => 'W', 'TYR' => 'Y', 'VAL' => 'V',
# Optional: Inclusion of non-standard or ambiguous codes
'SEC' => 'U', 'PYL' => 'O', 'ASX' => 'B', 'GLX' => 'Z',
'XAA' => 'X', 'TER' => '*'
);
#......................................................................................
sub usage {
my($errcode) = @_;
$errcode ||= 0;
my $ofh = $errcode ? \*STDERR : \*STDOUT;
print $ofh
"NAME\n $EXE $VERSION\n",
"SYNOPSIS\n Convert various sequence formats into FASTA\n",
"USAGE\n $EXE [opts] file.{gb,fa,fq,gff,gfa,clw,sth}[.gz,bz2,zip,zstd] > output.fasta\n",
"OPTIONS\n",
" -h Print this help\n",
" -v Print version and exit\n",
" -q No output while running, only errors\n",
" -k Skip, don't die, on bad input files\n",
" -n Replace non-[AGTC] with 'N'\n",
" -l Lowercase the sequence\n",
" -u Uppercase the sequence\n",
" -g Include VERSION (GENBANK,EMBL)\n",
" -s Strip sequence descriptions (FASTA,FASTQ)\n",
"HOMEPAGE\n $URL\n",
"END\n";
exit($errcode);
}
sub version {
print "$EXE $VERSION\n";
exit(0);
}
#......................................................................................
my %opt;
getopts('vhqnlukgs', \%opt) or exit(-1);
$opt{v} and version();
$opt{h} and usage(0);
@ARGV or usage(1);
my $skip = $opt{'k'};
# to debug broken pipe errors in CI
#STODUT->autoflush(1);
#......................................................................................
sub msg {
print STDERR "@_\n" unless $opt{q};
}
sub wrn {
msg("WARNING:", @_);
}
sub err {
print STDERR "ERROR: @_\n";
exit(-1);
}
#......................................................................................
msg("This is $EXE $VERSION");
# regexp to function mapping
# put in order of most-likely to be encountered
my @formats = (
[ 'GENBANK', qr/^LOCUS\h/, \&parse_genbank ],
[ 'EMBL', qr/^ID\h/, \&parse_embl ],
[ 'FASTA', qr/^>\S/, \&parse_fasta ],
[ 'FASTQ', qr/^@\S/, \&parse_fastq ],
[ 'GFF', qr/^##gff/, \&parse_gff ],
[ 'CLUSTAL', qr/^(CLUST|MUSCL)/, \&parse_clustal ],
[ 'STOCKHOLM', qr/^# STOCKHOLM\s/, \&parse_stockholm ],
[ 'GFA', qr/^[A-Z]\t/, \&parse_gfa ],
[ 'PDB', qr/^HEADER\h/, \&parse_pdb ],
);
# loop over all positional command line arguments
my $processed=0;
# are we in '-k' skip mode?
my $notify = $skip ? \&wrn :\&err;
FILE:
for my $infile (@ARGV) {
msg("Opening '$infile'");
$infile = $STDIN if $infile eq '-';
if (-d $infile) {
$notify->("'$infile' is a directory not a file");
next FILE;
}
if (! -r $infile) {
$notify->("'$infile' is not readable");
next FILE;
}
# read first line to see if we have any data
my $unzip = IO::Uncompress::AnyUncompress->new(
$infile,
'MultiStream' => 1, # fix Issue #34
'Transparent' => 1, # allow non-compressed data
'BlockSize'=> (1 << 16), # in bytes
);
if (! $unzip) {
$notify->($AnyUncompressError);
next FILE;
}
my $header = scalar(<$unzip>); # read first line
if (not $header) {
$notify->("The input appears to be empty");
next FILE;
}
# detect format from first line
my $ok=0;
for my $fmt (@formats) {
if ($header =~ $fmt->[1]) {
msg("Detected", $fmt->[0], "format");
# read in the rest of the file now
my @line = ($header, <$unzip>);
my $lines = scalar(@line);
msg("Read $lines lines from '$infile'");
# run the parser
my $nseq = $fmt->[2]->( \@line );
msg("Wrote $nseq sequences from", $fmt->[0], "file.");
$nseq or $notify->("No sequences found in '$infile'");
$ok++;
last;
}
}
$ok or $notify->("Unfamilar format with first line: $header");
$processed++;
}
msg("Processed $processed files.");
msg("Done.");
exit(0);
#......................................................................................
sub purify_dna {
my($dna) = @_;
$dna =~ s/[^ATGCN\n\r-]/N/gi if $opt{n};
$dna = lc($dna) if $opt{l};
$dna = uc($dna) if $opt{u};
return $dna;
}
#......................................................................................
sub purify_id {
my($id) = @_;
# \V is non-(vertical-space) eg. cr nl
# \h is horizonatel-spce eg. spc tan
# we don't use $ as that strips the newline
$id =~ s/\h\V*// if $opt{'s'};
return $id;
}
#......................................................................................
sub parse_fasta {
my($lines) = @_;
my $count=0;
for my $line (@$lines) {
next if $line =~ m/^\s*$/;
if ($line =~ m/^>/) {
$line = purify_id($line);
$count++;
}
else {
$line = purify_dna($line);
}
print $line;
}
return $count;
}
#......................................................................................
sub parse_fastq {
my($lines) = @_;
my $count=0;
# jump 4 lines at a time
for ( my $i=0 ; $i < $#{$lines} ; $i+=4 ) {
$lines->[$i] = purify_id($lines->[$i]);
print ">", substr($lines->[$i], 1);
print purify_dna( $lines->[$i+1] );
$count++;
}
return $count;
}
#......................................................................................
sub parse_gff {
my($lines) = @_;
# Skip past until we get to ##FASTA section
while (my $line = shift @$lines) {
if ($line =~ m/^>/) {
unshift @$lines, $line;
# let the FASTA parser do the work now
return parse_fasta(\@$lines);
}
}
return 0;
}
#......................................................................................
# https://github.com/GFA-spec/GFA-spec/blob/master/GFA1.md
# https://github.com/GFA-spec/GFA-spec/blob/master/GFA2.md
sub parse_gfa {
my($lines) = @_;
my %S;
my %P;
my $count=0;
for my $line (@$lines) {
my(@x) = split m/\t/, $line;
# this is NOT the original contigs, rather the unitigs
# need to parse L (link) and P (path) to reconstruct the contigs
if ($x[0] eq 'S') {
print ">", $x[1], "\n", purify_dna($x[2]), "\n";
$count++;
}
}
return $count;
}
#......................................................................................
sub parse_genbank {
my($lines) = @_;
my $acc = '';
my $dna = '';
my $in_seq = 0;
my $count = 0;
foreach (@$lines) {
chomp;
if (m{^//}) {
print ">", $acc, "\n", purify_dna($dna);
$count++;
$in_seq = 0;
$dna = $acc = '';
next;
}
elsif (m/^ORIGIN/) {
# ORIGIN
$in_seq = 1;
next;
}
if ($in_seq) {
# 421 ctctcaaact aaagccgtct cactctccat gagtcgttcg acagatcgcg ttttaaattg
my $s = substr $_, 10; # trim the coordinate prefix
$s =~ s/\s//g;
$dna .= $s . "\n";
}
else {
# LOCUS NZ_AHMY02000075 683 bp DNA linear CON 23-NOV-2017
if (m/^LOCUS\s+(\S+)/) {
$acc = $1;
}
# VERSION NZ_AHMY02000075.1
# this is not elsif in case ther eis no VERSION
if ($opt{g} and m/^VERSION\s+(\S+)/) {
$acc = $1;
}
}
}
return $count;
}
#......................................................................................
sub parse_embl {
my($lines) = @_;
my $acc = '';
my $in_seq = 0;
my $dna = '';
my $count = 0;
foreach (@$lines) {
chomp;
if (m{^//}) {
# end of record
print ">", $acc, "\n", purify_dna($dna);
$count++;
$in_seq = 0;
$dna = $acc = '';
next;
}
elsif (m/^SQ\s/) {
# SQ Sequence 569 BP; 145 A; 133 C; 152 G; 139 T; 0 other;
$in_seq = 1;
next;
}
if ($in_seq) {
# agtcgctttt aattatgaat gttgtaacta cattatcatc gctgtcagtc ttctggctgg 60
s/[\s\d]//g;
$dna .= $_ . "\n";
}
else {
# ID K02675; SV 1; linear; genomic DNA; STD; UNC; 569 BP.
if (m/^ID\s+([^;]+)/) {
$acc = $1;
if ($opt{g} and m/\bSV\s+(\d+)/) {
$acc .= ".$1";
}
}
}
}
return $count;
}
#......................................................................................
sub parse_clustal {
my($lines) = @_;
my %seq;
my @order; # keep track of sequence identifiers order
foreach (@$lines) {
# uses '-' for gap, ignore optional position number
next unless m'^(\S+)\s+([A-Z-]+)(?:\s+\d+)?$'i;
push @order, $1 unless exists $seq{$1};
$seq{$1} .= $2."\n";
}
for my $id (@order) {
print ">", $id, "\n", purify_dna($seq{$id});
}
return scalar(keys %seq);
}
#......................................................................................
sub parse_stockholm {
my($lines) = @_;
my %seq;
my @order; # keep track of sequence identifiers order
foreach (@$lines) {
next if m/^#/;
last if m{^//};
# uses '.' and also '-' for gap, optional position number
next unless m'^(\S+)\s+([A-Z.-]+)(?:\s+\d+)?$'i;
my($id,$sq) = ($1,$2);
$sq =~ s/\./-/g; # switch to standard FASTA '-' gap char
push @order, $id unless exists $seq{$id};
$seq{$id} .= $sq . "\n";
}
for my $id (@order) {
print ">", $id, "\n", purify_dna($seq{$id});
}
return scalar(keys %seq);
}
#......................................................................................
sub parse_pdb {
my($lines) = @_;
my %seq;
# HEADER IMMUNE SYSTEM 06-MAR-00 1EK3
my @hdr = split ' ', $lines->[0];
my $prefix = $hdr[-1];
foreach (@$lines) {
#SEQRES 9 A 114 GLY GLY GLY THR LYS VAL GLU IL E LYS ARG
#SEQRES 1 B 114 ASP ILE VAL MET THR GLN SER PR O ASP SER LEU ALA VAL
next unless m/^SEQRES/;
my @x = split ' ', $_;
$seq{"$prefix-$x[2]"} .=
join( '', map { $aa{uc($_)} || 'X' }
splice(@x,4) );
}
for my $id (sort keys %seq) {
print ">", $id, "\n", purify_dna($seq{$id}), "\n";
}
return scalar(keys %seq);
}
#......................................................................................
tseemann-any2fasta-52ac696/environment.yml 0000664 0000000 0000000 00000000202 15124622627 0020643 0 ustar 00root root 0000000 0000000 channels:
- conda-forge
- bioconda
dependencies:
- perl >=5.18.0
- gzip
- bzip2
- unzip
- xz
- zstd
- bats-core
tseemann-any2fasta-52ac696/paper/ 0000775 0000000 0000000 00000000000 15124622627 0016671 5 ustar 00root root 0000000 0000000 tseemann-any2fasta-52ac696/paper/paper.bib 0000664 0000000 0000000 00000003346 15124622627 0020464 0 ustar 00root root 0000000 0000000 @article{rice2000emboss,
title={EMBOSS: the European molecular biology open software suite},
author={Rice, Peter and Longden, Ian and Bleasby, Alan},
journal={Trends in genetics},
volume={16},
number={6},
pages={276--277},
year={2000},
publisher={Elsevier}
}
@article{gilbert2003readseq,
title={Sequence File Format Conversion with Command-Line Readseq},
author={Gilbert, Don},
journal={Current protocols in bioinformatics},
number={1},
pages={A--1E},
year={2003},
publisher={Wiley Online Library}
}
@article{stajich2002bioperl,
title={The Bioperl toolkit: Perl modules for the life sciences},
author={Stajich, Jason E and Block, David and Boulez, Kris and Brenner, Steven E and Chervitz, Stephen A and Dagdigian, Chris and Fuellen, Georg and Gilbert, James GR and Korf, Ian and Lapp, Hilmar and others},
journal={Genome research},
volume={12},
number={10},
pages={1611--1618},
year={2002},
publisher={Cold Spring Harbor Lab}
}
@article{cock2009biopython,
title={Biopython: freely available Python tools for computational molecular biology and bioinformatics},
author={Cock, Peter JA and Antao, Tiago and Chang, Jeffrey T and Chapman, Brad A and Cox, Cymon J and Dalke, Andrew and Friedberg, Iddo and Hamelryck, Thomas and Kauff, Frank and Wilczynski, Bartek and others},
journal={Bioinformatics},
volume={25},
number={11},
pages={1422--1423},
year={2009},
publisher={Oxford University Press}
}
@article{pearson1988fasta,
title={Improved tools for biological sequence comparison},
author={Pearson, William R and Lipman, David J},
journal={Proceedings of the National Academy of Sciences},
volume={85},
number={8},
pages={2444--2448},
year={1988},
publisher={National Acad Sciences}
}
tseemann-any2fasta-52ac696/paper/paper.md 0000664 0000000 0000000 00000004077 15124622627 0020332 0 ustar 00root root 0000000 0000000 ---
title: 'any2fasta: convert various sequence and alignment formats to FASTA'
tags:
- bioinformatics
- genomics
- file format conversion
authors:
- name: Torsten Seemann
orcid: 0000-0001-6046-610X
affiliation: "1, 2"
affiliations:
- name: Melbourne Bioinformatics, The University of Melbourne, Parkville, Australia.
index: 1
- name: Doherty Applied Microbial Genomics, Department of Microbiology and Immunology, The University of Melbourne, Parkville, Australia.
index: 2
date: 18 October 2018
bibliography: paper.bib
---
# Summary
FASTA is a simple and pervasive plain text file format for storing
genetic sequence data [@pearson1988fasta]. There exist many other
richer formats for storing sequences and associated annotations
and meta-data, such as the
Genbank and EMBL flat files (http://www.insdc.org/documents/feature-table).
These formats often need to be converted to FASTA for use in
downstream software that only handles the FASTA format.
Common tools for converting for format conversion are
EMBOSS `seqret` [@rice2000emboss] and `readseq` [@gilbert2003readseq].
Unfortunately, these tools mangle sequence identifiers containing
characters such as `|` and `.`. Furthermore, they offer no way to fix the behaviour
and have not seen any development activity in years.
Custom scripts using the Bioperl [@stajich2002bioperl]
or Biopython [@cock2009biopython] libraries are available,
but these are heavyweight solutions for a relatively simple problem.
Here, I present a new software tool called `any2fasta` written
as a single Perl script with no dependencies. It can read the
Genbank, EMBL, GFF, FASTA, FASTQ and GFA sequence formats,
as well as the CLUSTAL and STOCKHOLM sequence alignment formats.
The input files can be of mixed type, and may be compressed with
`gzip`, `bzip2` or `zip`. `any2fasta` is fast because it only
parses those parts of the input files needed to extract the
sequence and its identifier.
# Acknowledgements
This work was supported by a National Health and Medical
Research Council of Australia Project Grant (ID 1149991).
# References
tseemann-any2fasta-52ac696/test/ 0000775 0000000 0000000 00000000000 15124622627 0016541 5 ustar 00root root 0000000 0000000 tseemann-any2fasta-52ac696/test/test.clw 0000664 0000000 0000000 00000001153 15124622627 0020227 0 ustar 00root root 0000000 0000000 CLUSTAL W (1.81) multiple sequence alignment
gene02 ATGCTAGAATATGCTCTGAG--ATATTCAATATATCGTGCTAGGATATGCTCTGAGATAT
gene01 ATGCRAGGATATGCTCTGAGATATATTCTATATATCGTGCTAGGATATGCTCTGAGATAT
gene03 ATGCT---ACATGCTCTGAGACATATTCTATATATCGTGCTAGG---TGCTCTGAGATAT
**** * ********** ****** *************** *************
gene02 ANNCTAGATATCGGCTAGGATATGTTCTGAGATATATTCTTTTATATCG
gene01 ATTCTATATATCGGCTAGGATATGCTCTGAGATATATTC-TATATATCG
gene03 ATTCTATATATCGGCTAGGATATGCTCTGAGATATATTC-TATATATCG
* *** ***************** ************** * *******
tseemann-any2fasta-52ac696/test/test.embl 0000664 0000000 0000000 00000007032 15124622627 0020363 0 ustar 00root root 0000000 0000000 ID K02675; SV 1; linear; genomic DNA; STD; UNC; 569 BP.
XX
AC K02675;
XX
DT 02-JUL-1986 (Rel. 09, Created)
DT 15-JAN-2007 (Rel. 90, Last updated, Version 4)
XX
DE Plasmid pWM5 (mini-plasmid derivative of chimeric R/Ent plasmid pCG86 from
DE E.coli) basic replicon RepFIIA/RepFIC region.
XX
KW plasmid.
XX
OS Plasmid pWM5
OC other sequences; plasmids.
OG Plasmid pWM5
XX
RN [1]
RP 1-569
RX DOI; 10.1016/0147-619X(84)90062-3.
RX PUBMED; 6494315.
RA Picken R.N., Mazaitis A.J., Saadi S., Maas W.K.;
RT "Characterization of the basic replicons of the chimeric R/Ent plasmid
RT pCG86 and the related Ent plasmid P307";
RL Plasmid 12(1):10-18(1984).
XX
DR MD5; ed354992449dfe2168aad0ff7db774cc.
XX
FH Key Location/Qualifiers
FH
FT source 1..569
FT /organism="Plasmid pWM5"
FT /plasmid="pWM5"
FT /host="K-12"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:2660"
XX
SQ Sequence 569 BP; 145 A; 133 C; 152 G; 139 T; 0 other;
agtcgctttt aattatgaat gttgtaacta cattatcatc gctgtcagtc ttctggctgg 60
acgtactgag tacacgctcg taagcggccc tgacggcccg ctaacgcgga gatacgcccc 120
gactgcgggt aaacccttgt cgggaccact ccgaccgcgc acagaagctc tgtcatggct 180
gaaagcgggt atagcttagc aggaccggga tgagtaaggt gaaatctatc aatacgtacc 240
ggcttacgcc gggcttcggc ggttttactc cggtataata tgaaacaaca aagtgccgcc 300
ttacatgccg ctggcgcggc atatcttggt gacaatatct gaatcgttat atactgcgta 360
tatacgtagt aatgacgagg tgataaatgg cacaggttaa tatgagttta agaatcgacg 420
ctgaactgaa ggatgctttt atggctgctg caaaaagcat ggaccgtaat ggctctcagt 480
taatccggga ttttatgcgc cagaccgttg aacggcagca taatacctgg ttccgtgacc 540
aggttgcggc aggacgtcag caactcgag 569
//
ID L02679; SV 1; linear; genomic DNA; STD; UNC; 569 BP.
XX
AC L02679;
XX
DT 10-JUL-1987 (Rel. 09, Created)
XX
DE Plasmid pWM7 (mini-plasmid derivative of chimeric R/Ent plasmid pCG86)
XX
KW plasmid.
XX
OS Plasmid pWM7
OC other sequences; plasmids.
OG Plasmid pWM7
XX
RN [1]
RP 1-569
RX DOI; 10.1016/0147-619X(84)90062-3.
RX PUBMED; 6494315.
RA Picken R.N., Mazaitis A.J., Saadi S., Maas W.K.;
RT "Characterization of the basic replicons of the chimeric R/Ent plasmid
RT pCG86 and the related Ent plasmid P307";
RL Plasmid 12(1):10-18(1984).
XX
FH Key Location/Qualifiers
FH
FT source 1..569
FT /organism="Plasmid pWM7"
FT /plasmid="pWM7"
FT /host="K-12"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:2660"
XX
SQ Sequence 569 BP; 145 A; 133 C; 152 G; 139 T; 0 other;
agtcgctttt aattatgaat gttgtaacta cattatcatc gctgtcagtc ttctggctgg 60
acgtactgag tacacgctcg taagcggccc tgacggcccg ctaacgcgga gatacgcccc 120
gactgcgggt aaacccttgt cgggaccact ccgaccgcgc acagaagctc tgtcatggct 180
gaaagcgggt atagcttagc aggaccggga tgagtaaggt gaaatctatc aatacgtacc 240
ggcttacgcc gggcttcggc ggttttactc cggtataata tgaaacaaca aagtgccgcc 300
ttacatgccg ctggcgcggc atatcttggt gacaatatct gaatcgttat atactgcgta 360
tatacgtagt aatgacgagg tgataaatgg cacaggttaa tatgagttta agaatcgacg 420
ctgaactgaa ggatgctttt atggctgctg caaaaagcat ggaccgtaat ggctctcagt 480
taatccggga ttttatgcgc cagaccgttg aacggcagca taatacctgg ttccgtgacc 540
aggttgcggc aggacgtcag caactcgag 569
//
tseemann-any2fasta-52ac696/test/test.fna 0000664 0000000 0000000 00000165143 15124622627 0020220 0 ustar 00root root 0000000 0000000 >NZ_CHER02000075 Leptospira kirschneri ctg7180000004940
AACRYANTCTCGAATTACAGAGATATTCTTTTCGGCCATTTGAGAATGATTGGATAGAAC
TTAAAAGACTCGCCTTTCTACACGGAGTTTCGATGTGTAAAATGTTTGTAATACTATTAT
TGGAGACGGATCTTTATCCGGAATCTAGATATGCGGAAAATCCAATTTTAGATGAATTTA
AAGAATATATCGGAGATCCGACCTTAATTCAAAAAACTAGAAACTAAATGAATATTTAAA
ACTGAGAAATTACTCAAAATGGATGGGCGATTTTACCAAAAATGCAAAGTTCTCAAAAAT
TGAGCCAGGCTGGGAATTGTTTAGATTTTTGCGGGAGGTACTACATTCTCAGTTTTTAAA
CAAACACGAATTCGAGGTAGTGCGAAAGGGATCGATGCGAGGAAGCTAAAGCAAAACGCT
CTCTCAAACTAAAGCCGTCTCACTCTCCATGAGTCGTTCGACAGATCGCGTTTTAAATTG
TAACTTAAGATGAAATATCGTATTAAGTTTCTTTCATACAATTTATTAACCAGAGGGGAG
AGCCAGGTCCGGCTGACCGTGACAGTCGGATTCGCCTGATTTTCTTACGCCCAATTCAGG
TTATAATAGAATAACTAAAACTCTACCTTTAAACTTGGATTTGTTTGAAATACTTTATTA
TAAGAATGAGTAGAAGGTTTTGA
>NZ_CHER02000073 Leptospira kirschneri ctg7180000004972
AAGGTATACCTATGTATTTTTCGTATTCGTCTAACTCTGATTCTGTGATGTCTAAGGGTT
TTATTTTAAAATAATTGATTACCATAGATTTACCCCTTACTTTGGTTTTTTGAAATGGCA
ACTAGTAGAGCGAAAAAAAACTTAACTTTTCTTATTTACGATCCTTTAAGAAAGTATCTG
AAGAATTGCCATCTGTTTTGGTATTCAGAAAAACGTAAGATTTAGCTTGATTGAATCCTT
CTTATTCGAGTAGTTTGCTCTAATTGGAATCCAGATATAACGAATAAAATGACTAAAGCA
ATGCGCACGTATGTCAATTAAAAAATGCAATACGCACGATAAAAAATATGGAAAAATTCG
ACAGATTACAAAAAGCATGTAACACCTTAAAAATTAACAGAAAAGGTTTAGCCGATATAT
TAAGGATTCATCCATCGAATGCCTCCAGATTATTAAATGGTGATACAGAATTTACATGGA
CATATGCCGAACTTTTTCAGTTGAAAACAAATGTCTCTGCTAATTGGATTATGGAAGGCA
AAGGAGATTTTTGGTCAGAAGAATCTGGTAATGACAAAGAAAAGTTAATACTTCGAACTA
TATTAAAGATTCCCGGTTTAGGTGAAGTAATGGAAAAGTTTGTAAAATTACATCAAGAAG
ATCAGAACGCTGTTATAGAAATTATTAATCGAATCTATTATTTATCTATGTCAAAGTTTA
AAAAATAAAAAAAGTTACTTTAAATATTTATCATATTTAATAGCAATTTTTCTTGCAGTT
GCTTGTAATGGAATATTTGCTTTAAAAAACCATTGATAGGCTGTGTCTATTACTTCTTTA
GCAAGGATCGAGTTTGCGTTTAATCTTCTCATTTCAAATTCTTCTGGATCTAAAATAGAA
TATAGTTTTAGGATTGGATTTAAAGTAATTCTATTTAGTAAAGGGACATTTATTCCGGAA
AAGATTTCTTGTCTAGTTTGAAAAGCATCGTAATGCAAAATTGCAATTCCCCAAAAAATT
ATACAAATCATAGTACCGATTGAGGCATAAGATCCTAAATATATTTCAAAGAATGGTAAA
ATCCAAACTAAAGGTATGATAATTAAAAATGCAGAGGTAATTCCGAATAACATTAAGGAC
AATCGAACACGAATCATTCCTTCGGATTTAATTAAGCATTTTACAAGTTTATAAATACAT
TCTAATAAACAAAATATAGAATATAGTAATAAGATATGATATGCTAATTGAGGTTCATGT
TTTAAGGTATTAATATCTATAATTTTTATTAATCTAAAGCTAAGAGCTGAAAGAATTAAA
TAAGAAATAATACAAAATTCTATTGATTTTCTTAAAATAGAAGTTTGGTAATTTTCATTA
ATAAGTTTGTTAACAATTTTAGATAAAAAATAAGGAGCGAGAATAGCTGAAATCAAAATC
CAATTGGGTGCATAGAGGCGAACACTATAAGGAATAAATTGTCTGCATCCAGAAAATAAT
GTCCATAACCCAACGGAAATACATAGATAATAAAAATTCCGTCTTACTTCAATGAAAGGA
TTACTAATTTTCTTAATATAATATCCAAGACCCAATATAAATGACGAAGTTAAAAGTATA
AAAAATACTGACATATTTGTGACACGAACGTTTTCAAGTCACCATAAACGTGTTCTTATT
TTTTGTAAAGCTACTTTAGGAATTTCGATAGGTGTAAGATAAACTAGTTCATTGTTATGA
TAACATTCCGGAAAATAGACTTCTCTTTCATACTTTTTGGAAGGAACAGCACCTATAGAA
GTGTAAAGTTTAACAATTGAATTTACATTTTTGTGATAAAATCCGTAGACTATATCAAAA
TTTTTATCAATACAATACTGAGCTGCTGCTTTAAAAGTTGCTAATGCAGCCCAACAACCT
TTTTTAGAATGTTCAAAACTAACTGAATTCCAATCAGCAATATTGTCGCCTATTACAGCA
TATCTTTGATTAGGTTCGGTATCCTTAATAATTCCAAGTTCTAATGGAATCAGATTATTA
GGTTTTTTTTCTACAATTCGCATTGCAGCTAATATTTCAGAACCCTCACGGACGTAAAAC
CAAGTAGACCAAGCGTCCATTTCCACAGCGGTATATAATGATTTTGTATATCCGAAGTTA
TTAAAAATATCGCCGGCAAATTTTTTAACGTGATTTAGTTCGTCTTGATTTTCTAATCCT
GATAAACGAATTACGTGAAATTTATTAACAGGTTTTGTTCTTTGAATTGTAAGTAGCATA
TCAAAATTATGTCACATTATAACAAAATTTCAATAATTTAATCCATTTTTTAACCTTATA
TTATAATTTAGAACCGTATAACAAAAGTATCAGCATATACGCCAACAAAAACCGTATTAG
AGATAATCGCTGATAAAAAAAACGATAACGTCTTTTATTTAAAACAAACAAGAGGAAAGA
AGTAAAATTCTAATTAAGTATAATTGAATACAGAGTAAACCCTTGAACCGTAACGAATTG
AATAAGGTTATATCTAAGATATTGAAAGCATACGAAGAGATGAGACTTCAAAGTTCATTG
AATGGAAACTCGGAAGTATTGGAAGCTAATCGAGAGATTGGAAGGATTTTGCAAACGGTA
GAACGAAAAACCCCAGAACCAGAAAGATTAACTGGTAATTGGATGAGATCAATTTCAATT
GTATTATATTTTACCTGAGTCCCTCAAAAACTAACAAAGCACAGAAAAACGCAAAATCAG
AACGATTTCGAGAACAAAACAAAGAAATGAAGAAATGAAATCTCGTAAAATAGACGTTAG
GTCCTTTTTAAAAAGAAACTGAAAAATACAATGATTTTTGAATAAACCGTATCTGTAACT
TTAAAGTTTTATTACCGTTCTTTCAATTTCTTGATAAACATAGTTAAGACAGATGCTCTT
TCTAAAGAGAATTGACAACCACTGCCGAGGAAATCGAATAGGAACGTATGACTGAAGTCA
ATAACCCACACGATCGACTGATCCGGGAGACGTTACAGGACAAGATCGAAGCTATTTCTT
TTTTTAGAAAAACACTTCCGCCAGAAGTAGTAGAGTTACTCGACTTGGAAAAGTTGGAAC
TATCGGAATCTAGTTTCGTATCTGAAGAACTCAAATCAGAACAGACTGATTTGTTGTTTC
GAATCCCCTTAAGGTCAGGAAATCAAGCCAGCGTATATATTCTATTCGAACACAAAAGTT
ACTTAGACAACGCAATCTATATTCAACTCTTAGGATACCTTTCCGAAATCTATCGTAGTC
AACAAAGAAACTCTGAAAAGTTATCAGTCGTAATTCCGTTCGTATTCTATCACCGAGAAA
AAGAATGGAAACTCGGAGAAAATTTTTTACATCAATTCAAAATTACGAAAGAGGAAACCA
TACACCTCCGCCACTTTATACCTGATTTCAAGATTGACTTGTTTGATTTGTCAGGAATGG
AAATACAAGAAAAATTGGAGAGTATCACGCTTCAGGTGATCTTTGGAGTAGTGCAAAGAA
TTCGAGAAGGTGAAGAGAAGTTTCAAAAGTCGCTTCCAGCACTTTTTTCACTACTCCTTG
AGATTAGAGAGGAGCCAAAAAGAGTTGCCCTCTTAAACAAACTGTTGTTGTATATATATA
ATGTAAGAGATTCAAAACCGTCCGTCCTGAAGCAAATGCTTCATTTATCGAGACTGGAAA
GATACGAGGAGTTGGCTATGACCACAGCGGAAAAATTGATTCAAGAGGGCAAGATTGAAG
ATGCCCGCAAGATGTTTGCTAAAGGGATCGATCTAAATACGGTTTTGGAAATTACCGATC
TAACCGAGAAAGATCTCCGTGACAATGGTTTGATCTGAACTTTACAAATATGAGTTAAGA
AAGAGAGAAATCTCGTAAAATAGACGTTAGGTCCTTTTTAAAAAGAAACTGATAAATAGT
CGTCCCTGAAAAATTGAGATTTTTGAGGAAATGAAAAGAAACAAGACTCAAATTGAAAAT
AAAAAGGATGAAGAAATAAGATTTTCGAAATAGCAAAAAAAAGCTCGAATGAGCTTAGAG
AAATTAAACCCAGCAGCGGATAAGATCGCATTGATATGTAATAGTTAGAACTTGATCTTA
CACTCCTTAAAATAAATAAGGAGAAAAAGATGACAACAGGACAAAAAATAATCAAGAACA
AGGTT
>NZ_CHER02000072 Leptospira kirschneri ctg7180000004969
GACTTCAATACTCAATTGTTTATGGCTATGATGGTCTGGGTCGTCTTACATCGGCTAACG
GAACGTATATTGAACCTTTTAATTCCAACTTTACACAGAGATTTCAGCAGTCTTTTGTTT
ATGAGAAGAATGGTAACTTATCTTCTAAGAGATTTCACGATCCTCTGAGTGGTTCTGTTC
AAGACGTTTGGAGTTATCAATACACAAACCACCAAGTGACAAATATTGATTCTTCTAAAT
CGGGTGCGGATGCTCTTACGATGTCGTATGACGCCAATGGTAACTTAACTCGTCAAAGAG
ACAACGTTAAAGATCTTACCAAACGGATCAGTATTGATTCTCAAGACAGGATTACTCAGA
TTCAGGATGGGAACAATGCGGTCCTCGGTAGTTACTGGTATGACGAGAGTGGTTTTAGAA
TTCGGAAGTCTTCTTTAGAACCGAAGAACAATGTTTTTTCTAACGTTGAGATTTTGTATC
CGAGTAAGTTCTTTGGCCTTGAGTTTATCGAATCCGAAAACGTGATCTCTTCGGTTAACA
ATGTTTATCTGAATGGGGTTCGTATTGCTGCGTTAAACGAGGCGGGCGCTCTTGCGTATT
ATTTAACCGATCAAGTAGATTCCGTCTCAACTGTGTTAGACGATGAGGGGAACACTCTTT
CTTTGATGCAGTATCTTCCGTATGGTGAGACGTTTGTGCAACGGGGGGATTTGAATTTTT
CTCCTAAGTTTAATTCGCAGGAGTTAGACAGAGAGTCTGGGTTTTATTTTTTCAATGCGA
GATTTTATGACCCGGGGATTGCGAGGTTTACCAGTGCGGATTCGGTGATTGACGGTGAGT
TTGATACGCAAGGTTGGAACCGTTTCTCGTATGTAAAAGGGAATCCGATTGGCGCGAAAG
ATCCGACGGGGCATTTGGCACAATTGATTCCAATTGCTGTGAGAGTTGGACAAGGTTTAG
CAGCAGCAGGAATGGCTCTTTGTTCTTCCGGAACAATTAACTGTGGAGATATGATTCCAA
GTAAGGCTGACAAGCCTAGAGACACTTCCGTTTCTCCAAATGATGCGAAACAGATGGAGA
AGGCCGGTCTTGATCCGTTAAATGCAAAAAAAGGATCTCAAAAAAGTATTGGCGATGGCG
GTAAAAATGGATCTAATGATGCTGAAAAGTCGGGTGTTAGCAATAAAGGGAATAATACCG
GGAATGGTTCCGGTAAATCCGATATTGGGTCGACTCGATCGTCAAATAAACTTGCACCTT
ACAAAGATAATCCAGGTGATAAAATAAAGGCATCAGCGGTTGGGGATCATACGAGTTTCA
AACGAGATAAAGATGGAAATATTTTCAAATATGAAACGTATGAGAAAACGAAAACCGGTC
ACTTTGATCCTAAAGTCAGAGGTGATGGTGGGCAATGGGATGGTAGACCCGGTAAAGCTC
ATGAAAATTCGGTAACGGGAGAAAAGCTCAACACACCGCATATCCAAGGAAAAGATATTC
CTGGAGGAGTTAGAAAACCATTGCCGGGCGAAACACCCAATAATCCAAGGTGGCGGGAAT
GAAAAGAGATATTTTTGACTGGCTGGTTCAGTGGTATTCCGATCAATGTAACGGAATTTG
GGAATTAGAGAACCAAATCAAAATAGATACATTAGATAATCCCGGTTGGACAATAGAGAT
TGGTTTAAAATCTACACAATTCGAAAACTTTGAACTAAAACCAATATCAATTCGAAATGA
AGACGAAACGAATTGGTATGTATACTCTATCAAAAATTCCGTTTATGATGCAGGAGGAGA
TTCATCCAAGCTTCCAGTCCTAATAGAGATATTTCAATCCATTTGGGAAAATAAAGAATT
CGTTTTGAGCCCTGAATCCGAAACTATGTTTTCTTGGTTAATGAAATGGTACCAATCTCA
ATGTGACGGAGATTGGGAACACGAATACGGGCTAAAAATTAATACTAACAAAGATCAAGC
TTGGCAGGTCGAAATCGATATTCGATTTACGGAGTTACACGATTTTGAGCTGGATACCGC
TCTTGAACAAAAAGGAACGAATAACTGGTATTCTTTTTCAATTAAAGATGGTAGATTTTT
GGCGGAAGGAGATTCAAAGAAGTTACCCGTTATTTTAGAAAAGTTTAAAGAGATCTGGGT
AACTTATTCTTGATTGAGTCAAAACTAAAATGCGTTCTCACTCAATCAACAGCAAGACAC
TATATCACAACGAGCGTGAGCCTCGCAAAAACTAAACTAACGGACGAACTCGACAACATA
ACAGAGGGAAAACGAAAGAAGTGAGAACATAACGAGAAAAAAAGAACATGCGGAAATAAG
AATATACTAAAATTCAGATGAAATCAAGAAAGAAAAGAGAAACGAAGACATAAAACAGCC
TTCCTGAAAAGACGGGCTTTCCAAGAAGAAAGAAATTAAAAATGCGTTAGGCAACTTTCT
TGTAAGAATAGATGTGATACAAGCCTCCAAGAACGGGTGTAGCAAGGAGCTTCGCACCTG
GAGGCGGTTTCAAAACAGGAGAAGGAACGGGAGAGTCTTTATTCAAAGCGAGATGGGTTC
TGTGGTTGTTGTAGAAATGAATAAACTCATTCAATTTTTTTTCCAAGTGATATTGGTTGA
GCGGAATGAAAAAATCCAAAAACTCATTTCTACAAGTCTTGATCCAGCGTTCGGCGTAAC
AGTTTTGCCAAGGAGAATGAAACGAAATCTTTTTGTGTTTGATGCCGATCCGTATCAAAT
ACTTTGTAAAACGTTTTCCAAAGACGGAATCATTATCAGAAAGAAAGTAATGAAACTTTT
TTCCCGCTTGTTTTTGTTTACGAATTGCAAACTTTAAAACTTTACGCATCCATTTTGTAG
TCGGGTTTGTATGAATGTCGAAATGAAGAATTTGTCTCGAACCGAGATGCAAAAAGAATA
CAACACGAAAGATCTGTTTGAAATTCGAAGAGTAAACAATAAACGTATCGGAAACAATCA
TAGCATCCGCGTGCAACAGGTAGAACTCTTTTCAAGAAATACGTTTTTTAGTGTTAGGTG
GAGGTTTTGGAATATACTTAGAAACGGTTCTTTCACAAATAGTATGACCCAATTTCAAAA
GCAATCCGTGCAGTTTAGTAGCTCCCCAGATTTTGTTTTCTTTAGCAACTCTTCGAATGA
GTTTAATGATTTCCCAAGGAATGTTGGGCCTACCTGTTTTTTTTCTTCTCGAAAGTAATG
ACCAAAAGATTTTGAACTTTTTCTTTCGCCATTCCAGAAGAGTAGCAGGGGAAATAAGGA
TTAGATTTTCTTTCCAGTTTCGATGGAGATAGGAAAGAATTACAAGTTTAAATCTTTCAA
GAGGTTTTGTATGAAATTTCTTTTTCTTTCGTTTGTAGGCTACAAGTTGGCTTTTAAGAA
ACAAAATCCGAGTTGTGTTTTGGGATTCTTTTTGAATATTATAAAGAAAATGAAAAAGAA
ATATGCAGTTGAGAAAGAGAGAAATCTCGTAAAACAAAAGTTAGGTCCTACTTAAAAAGA
AACTGAGAAATACAATGATTTTTAAATGAACCGTATTTGTAACTTTAAAACTTTATTACC
GTTCTTTCAATTTTTTGACCAACATAATTAAACTTCGCAAAAATTAAAAAAGCATATGAA
ATAGTGTAACGGATAGAGAAAAATAAAATCGTATTCTAAAACTAGAATATAAAGAAAATA
AAGTTTAATGATCTAAAGATCTTCGAAAACGATTTGCTTTTATTAGGAGAGATCTGAAAG
AAAAAAAGAAAATAATTTGATCTGCATTATCTCTATATTAAAAAACTATCATATTATCTA
CTCATTTACCTTTTCTCTGGGTTTCAACATTTGAAAGAAGTTCTTGTCTAAGATCTCTGG
GAGATTTACCAGTATATTTAACACAAGCCCTGTGAAAGGAAGAAGCAGAATTAAAACCAC
ATTCAAAAGCAATATTTAAAAGATTATAATTTAGTTTAATACGCATCATATTTTTAACTT
CGTTGATTCTGTGGAATTGTAGAAAATCAGTAAAACTCATATTCAAATATTGATTTAGAT
AGTAAGAAGCCTGATGAGTGGAAAGACCTAAACCAGAAGCAAAATCGGGAAGTCTCAGCT
CTTCGTCTATAAACCCTTTAGAATCTAAAAAATGATTCAATTTAGTATTAACTTTTTCTA
AATCGACCCCTTCTAATATATTTCTAGGTGGATATTTATTTTTTTGATTTTCTTTGACCT
CTGGAATGGTTTCTAATTCAATTTCTTTAACTATGTTAGTATCCAAGACCGTAACAGTAA
CTTTACTGAATAAGGAAGGAAAAAAACGTTCTAAAAGAATCGTATAACAAATAACTAATC
CGGGAATGAATTCTGCAAAGAATAAGAAATTTTTTTTATCGAAAATCGTACCAAAAAAAT
CAAAAACGAAACAAATAGAAATTAAAAACGATAAAAAGGGGAGGTTAAAATATAGAATAG
ATTTGTTAGTTTTTAAAATCCTACTCAAAGACCAGATAAAGGTAAAAATAGAAATCGCA
>NZ_CHER02000071 Leptospira kirschneri ctg7180000004939
TTCTGGATAGTCGATACGAGTCACACGACCTAAAAGATCATATCTAGTTTCTGTAATATA
CGGTCCGGCGGTTTCTGTCGGAAGAGGGTTTCCTTCTGTAGTCGCTAAAATCACTCTCGT
TTCTTTTTTAACACGACCTAATTTGTCGTAACTAAAGGTTTTGTTTTGGCTGGAGTCTTC
AATCCGTACGAGTCTTCCTAACGCGTTCTCACTCCCCGAAAAAGAATCATACGTATATTC
AATATTCCCTTCGGGGTTCAGAGGACAGAGGGGCGGCTTTCGGAGAAAGGTCGTTTTGTA
TTTTAAAGTTTCATTGTATTCAACATTATTGATTCGCTCTTGTTTCTCCGAAACCGGGCT
CTCGGCTCCAGTCAATAAATTGAAAGAAAGAAACGCGATACAAAGTATTATCTTCAGTCC
CAATTTATTGACTCCGCCTCCATCCCTGCCGCACAAAAGTGCGGCGCTGAGTTTATTCCG
CGGCACTCGAGTTATTTCCGCTTTGTAAATCTACATATTTCTTTTCTTCTTTCAAATCTC
TTCTACTCAAAGAAAATTGTTTTCAAAGAACAATAAGTCGTATCGCTTCGCACCAGCGGT
GCAATCAAGCTTAGTTCTCGAAAAAACTCGAAATTTCAGCTTCTTTAAGTAAAATATAAT
ACAATTGAAATATATCGCAAACATTTTTAGATTCTAATTCTATGATTCTTTTGAAATAAT
CGTTCTATTCCGAAACATTATTTCTAAGTATCCGTACGTAATTTTATAGAAGTTTCAAGG
GTTAAAAGAAGTTAACGTATTCGATTTCTGTATATATTTGCAACGATTTCGGCGCGTTCT
ATTTTTTCAAGAGTTGGATACCGAACTGCAATTTCATAGTGTTTATCAACTATATTTAGA
GTAACGTTCGCTTTTGACAAAATGAGTTTTATCTTGTATCCGTTTCGATCCATCAACTTG
TATAACGAAAGAACTACAATAGAAAAAATCCTGTTTAAAAGAGGTAAGGAATTTCCATTC
ATTACAAGTTCTCGAATCTTAAAAGCATCATAATGTAAAATAGCAACAGCCCAAAGAACT
GTAAAAGGTAATAATCCCAATGCAGAATATGAAGCTTTGAATATCCCTCTAAGCGGAAGA
ATATAAACGAATAAAATAGAAACAGACAAGGCAATTACAAGGCCCGTTAACATTAGAAAA
GATCGTATTCTTTCATCCCCACTCCTACGAACCATAACGCGACTAAGACTAAAAGTATTT
TGGGCTACCGAAGCAATAATATAAAAAATGAATAAATGATAATTAAGGTACGGTGAATAG
AAATAACGTATAGGATCGTTTAATTTAACAAAGGCGCCAAGAAGAGAAATAACAGAAAAA
GTAGGTAAAATCACAAAGACCGAGATAATACGATAAAAATTGAACTTAAATTTTTTCCTC
ATTAACGAGCAAACAACAAGATCAAGGAAAAAAGGAATATATACTACAGGAAACAAAATC
CAGTTTAACAATATTTCACGGTAAGCCAAAGGAAAAAAGCTTCTAAAACCAAGCCCACTC
ATCCACAAAGAAAGCGTAATGCAAAGAAGTAAGAAATAAATTTGAATTTTCTTTCTCGGA
AAAATACGATAAACGTAAATCCCAAGGTAAAATATAAAGAGACCGATCGCTACTACAAGT
AAATTATCTTCGAACATCGCAGTTTTGCCACGGTTACGATGCTTTTGACGCAATTTTCTG
TAAAGTCTCTTTTTCTAGTTCAATCACATTCAAAATACATGGTTTACCTTTTAAAGAGAA
ACCTGGATAGAAAACTCTATCGAAATACCGATGTGAGTCGACAGCGCCAGACTTTTTATA
AAACAAACCTATACTTTTGAGCGCCAAAGGATACATACCGTAAACGATTGAATAATCTTG
ATCGATACAAAATTTTGCAACTGCCCTAAATGTTTTTTTTGCCGCGCGCCAACCTTCATA
CGTTGAAACAAAAGCTACTGAATTCCAATCAGCAACTTTCTCTTCGATAACTGCATATCT
ACGATAAGGATGTTTTTTTTCTTCATCCACAATTAACGCAAGCTCTAACGGTATTAAGTT
CCAAGGTTTTTTTTCAACAATTCGCATAACAGCAAGAATTTCACCATCTTGTTCATAATA
AAACCAAGTAGACCATTCGTCATAATTAAAACCACGCCAAGGGGTTTTACTATAACCCGC
GCTATCGTAAACTTTATTTACGAAATCCTTAATTCTATTTAGTTCTCTCTCTGATTCGTT
ACCTGAAACAAGCTTTACAGGACTTTCTGATAACTTAATAGACATGTCATAATTAATGTT
CATTTCTAGAAATAAAATCAAGCCTTTGTTTTATACATTTTACTCAGAATTTATAATATT
CTACTTTTTAAACTTCAAAACAAAATGTAAGTATTTTCAACTTTATTAAAATAACTTTCG
TTCTTTGAATCAATAATTCATTTTTCTGGAAAGAAATTGACTTCCCTTTTTATCCTAAAG
GTTTTTCTTTTATATGTGTAATTGTTAATATTAATCTATTTCTTAAGTTTAGTGATTAAA
CTTTTGATTACTTCATAATTATCTTTTTTCATTCCGGACACCATTTGAACAAGCTCAAAC
AATTCAGAGTCTTTCTTAATCTTTACAAAAAAGCGGAACTCTTCTTCACTGAATGTTTTT
AAAACTTTTTCTTCTACGAACATACTTCCTTCACCAGATAAAAGCCAAGTCGAAGAAATA
CCCGTATAATGTTCAAATGTAACAGCCATTTTATTCAGAAGAGGTAACTTCCCATTAGCG
ATTCTTGATAGAGTGCTCGAAGCTACATCCATCGACTTCGCAATATGATTTTGAGATTTT
CCTTGGCGCTCTTTAAGATATTCCAAGGCTGTTTCGAATCTTTTTGCCACTTCTTGATCT
ACTTTCATTTTTTTCTAAAGTTTCTTACTGTTGCGTCAGGCAATATTTTCTGTTTGACAT
GTTGCTCTACGCATCATATAATATGACCAAACTCAAATTTTAAATTCATTATATAGGTAT
ATAAATGTCAGTTTCTAAAATGCAAAAAATTAAGAATTTTATCGGAAAATCTAATTTTAC
GTCTTTGGGTACCGCTCGAAATTTTTTGACAATAGCCGAAATTCTGCCATTCTTTTTTAA
GTCTTCGTTGAAGATTCCCAGCTGCTCAACCCTATTAATCAAAACCAAAAATGATAGGGA
TATTCTTCAAAACATTGATCTACAGAGAGTCGAATTTAAGTTAAATGAATTTTTAGCACA
AAAAAACTATAAAGACGAAGAAATTCGCTTACCTGATTTTGCGGCTGCAATAGGGCTTTC
TACCCATCAAGCTTCTTATTATTTAAATAAACGACTTAAAACAAGTTTTAATGATTTTAT
AAACTTCAATCGTATAGAAGAAGCTAAACGTTTGATCTTAATTGGCAATTCACGTTTTAC
GCTTTTGGACATTGCCTTTGAAAGCGGATTTAACTCAATTACAACCTTTCATAGGGCTTG
TTTAAAATTTACGGGTTGTTCTCCAAAAACCAAGTAAGTGGTAAATCATGGTAATCAACT
ATTTTACAATAAAACCCTTAAATTTCACAGAATCCGAGTTAGACGAATACTCAAAACACA
TAGGCTTTCCGTTATACAACGAAGACAAGGAAGCAATTCTGAAATACAACGGTTTTCGAA
AGGCATTAGCCATTAGAAAAAGATTAAAGCTCAGTTCATTAGAAAACATCTCTTTAAGCG
ATTTATTAAACAAAGAATAAAATCTAATAAGAGAATACTTTTAAAATCAATATCATGTCC
AAGTTCCTTTCCATATTTGATATAAACACAATCGGAATTTTAGATTATGAGAATTTTTTA
AAGTTGGGAGTTATCTATTTTCATGCTTTTGCTGTAGTT
>NZ_CHER02000070 Leptospira kirschneri ctg7180000004973
ATAACTACGAACGAACACATCAAGGCAAATATTGTTTTGGAAAAACTCCATTCCAGACTT
TCCTTGACACGAAGGAATTAGCTAAGAATAAGTATCTCGACAACTTACAGTTTTCGTAAT
CAACTTTAAATGAGTGTCAGATCTTATTTTGGCTATTACAATTGATACGATCTCCTTCTT
TACCTTTGAGAAAATTTCGAACCATATTGTGATCTTGTTTCAGATGAGAAATAACCGGTT
CAATAGCAGATCTTCTATTCATCCACATCCTTTCCCAACGAGTCATTTTCTTTCTGCTTT
TATTGGAAAGATGAACTTGAACATCTTCCGGATAATGATCTTTACCTTTGTAACCTAAGT
CTACATAAACCTCCTTAGGACGAAGACCAACAATCTTTTCCATCTGATTGATGGCGTCCT
TCAAAGTATGACCGTCATACGGGTTGTCATGCAAGGCTTGAACTCCAACAACCCAATTAG
ATTTACTCGTGGTAACTAAACTCACTTTACAACCAAACTCATATCTCTTATGAGATTTAC
CTT
>NZ_CHER02000065 Leptospira kirschneri ctg7180000004971
TGAGGGAAACACTCTTTCTTTGATGCAGTATCTTCCTTATGGTGATACGTTTGTGCAACG
GGGGGACTTGAATTTTTCTCCTAAGTTTAATTCGCAGGAGTTAGACAGAGAGTCTGGGTT
TTATTTTTTCAATGCGAGATTTTATGATCCGGGGATTGCTAGGTTTACCAGTGCAGATAC
TTTAATTGACGGGGAATTGGATACCCAAGGTTGGAATCGTTTCTCCTATGTGAAGGGAAA
TCCGATTGGGGCCAAGGATCCGACGGGGCACTTGGTTGCTGGTGATCCACTTTATCCCGG
TAAACTTCTAAATGCAAATCCATATGCAAATGCTGAATCTAAAGAATATCAAGGGAAAGT
TTCAGAGAAGGCAGGACCAAAAGGAACTGAAAAAGCAGCAAAAGAATATTTAAATGGTTT
GAAAGATGGTTATAGTTCTGGAAAAGACAGAACTTCATTCGGTATTCTTGATGTAATTAC
CGGTGGTACAGTAAAAGGCCAAAAATCAGCAAATGAAAAAGACAAGTTTAAAAATTCTCA
ATCTGAATTCTACAAAGAAGGTTATGGTAAGGGTAAAACTAGAGGTGCTGTTGAAGGAGC
TACTGAGTCTGCTTTGGATTGGTTACCTCTATTTGGGATGGCTAAAGGTGGCAACAGTAA
ACTTCGAAATAAACCTCCCGCCCCATTAAAAGAAGCAGAAGGTCGCCCACATTCTATAAT
TGAGAAACCTGGTAAAGAAGGCCAATATACTACACATAATGGAGATGGCACTTGGAAACA
ATATCGAGGCTCTGGAAAAGATCACGGATTAATTCCTAGACCAAATATAAAAGAAAGTGG
TAAAAATGTAACACCAGATGGTAGAGTATTTATTGACAAGGGTCGAGTAAGGCCAGTCGA
ACCGTGGGAATCTCCAAAATAATCTATGAAAAAGAACAATTTTACCTTTGCTGATTTCCT
AATTGCAAATCAAAATAAAAAGCTAGGACAATTCGATTATTTGCATGCAATTTTCACACT
ATCGGAATTACCAGCAGATTTGATCAAAAGCTTTTCACAATTATTTTGGCCAAATTATAA
GCTTGTAGACGGATTCATATTTTTAGAGGAAACTTTTGATCAAGTCCACTACGAGAAATA
TTTTGCAGAAAAAAAAAATATGAAGGAAATACAATTTTGGATCAATTTAATTGAGATTAC
AGGGATTTTTCCTAATCTAATCGAAAGCCAAGCTCAAGAAATCGCGAAGACAATAGAATT
GATGTGGAATACGAAGATTCAAATTGAGTTTAATCATTCAACAAGTAAAGCTAGATGGCT
GCATGATCCTGATACAAATGAAGTTTTTCTTACGATAGATTAAGCCGAGTCTCGCAAACT
AAAAAAGCAGAGGAATGAAATAACATAAAAGTATAAAGTCTGCTCTTTCTGCTCCGACTC
CAGTAAACGCTGTTGTCAATTCTGCGGTTGCCACTGGTAAAGGCGCCAAAGAACTTTATG
ATAACCGAAAGGAAGTTTACGCAAGCGCTAAAGATTTTGCTGGTAAATTAACGAGCAAAG
ACGACAAAGTTCGTGATTACGCTGCGGGTCAAGCTAAAGCTTACACTATGAGCGCGGTTC
TTGGTGGTGCTGCGACGAAAGCTCTTGGCTCCAGGTTGCCTAAGCCAAATGTTAATGTGC
CAGGTTCGTCGGGTAATGTAGGAGGAAATTCCCAGAAAGCAATACATGTTACAAAGGACG
GAATTGCTTTACCTGCGAATTCTAAATATAAAATACCTGACAAATATTTAGAAAACAAAC
ATAGGACAGGTAGTTATGGAGAAATAGAAAACGGTAAATTCAAAGAGAAATTAAGAATAG
ACCCTGCAACAAAGCCAGGTGATAAGGGTCCAAATTACTCACATTATCATTTAGATGGAA
AAGGAACGCATTATAGCCCTCGACATAATGATAAGGATCCAGGATTTTCCAAATGAAATT
TGAATTTAATAATCTACCTTGGCATGATGCTGAATTATTACTAATTGAAATCAATCGAAC
GTTGCCAGGGCACAATGATAGCATTTCCATATTAGTTAAGTGGCCAGACGAATTGAAATC
TCGAATTACTTTTACCAATTGTTATGGTTTCGAAGCAAGAATGAACTTTGGTTTCATTGC
TGAGGAATCGATTTTAAGAGCTTCAATAAATAATGAACAAGAAAAATTATATATTATTAA
AGAAAATTGGAAAAGTATGGGGGTAGATCTTGATAACTTAAAATGCTATGAAATTGAAAC
CAATACGACAGGGAGTTTGTTGTTGATTTACGCAATTGATTTTCAAATTAACCCTGAACC
TCGCAAGGACTAAAATGGGATCTGACAAAAACAATAGTGGAACATAGATTTCCTGAGTCT
CGCAAAACCCAAGAATCGGAACATAACAATAAGAAAAAAATAATTTAATCTGTATTACTT
TAATATTAAAAAGCTATCATATTATCTATTCATTCAACTTTTCTCTGAATTTCAGTATTT
GAAAGAAGTTCTTGTCTAAGATCTCTGGGAGATTTACCAGTATATTTAACACAAGCCCTG
TGAAAGGAAGAAGCAGAATTAAAACCACATTCAAAAGCAATATTTAAAAGATTATAATTT
AATTTAATACGCATCATGTTTTTTACTTCGTTGATTCTATGGAATTGCAGAAAATCAGTA
AAACTCATATTCAAATATTGATTTAAATAGTAAGAAGCTTGATGAGTGGAAAGACCTAAA
CCAGAGGCAAAATCAGGAAGTCTCAATTCTTCGTCTATAAACCCTTTAGAATCTAAAAAA
TGATTTAGCTTAGTTTTAACTTTTTCTAAATTGATCCCCTCTAACAAATCTCTAGACGGA
TATTTATTTTTCTGGGTTTCTAATTCAATTTCATTGGTTATATTAGCATCCAAGACCGTA
ACAGTAGCCGCCTTATTAAATAAAGAAGGGAAAAAACGTTCTAAAATAAGTGCATAACAA
ATAACGGAACCCGGAATCATTTCTGTTAAAAGAAAGAAATCCTTCTTATTAAAAACCGTA
CCAAGAAAATCAAAAACAAAACAAATAGAAATAAGAAAAGATAAAAAGGGGAGGTTGAGG
TATAAAATAGGTTTATTGGATTTTAAAACCTTTTTCAAAGACCAGCCGAAAGTAAAAATA
GAAATCGTAAATCCTAGAATATCTACAAAGGATATGAAATAAAAATCAGGGATTAAGTAA
GAGAGTGGGATTACAAAAGGAATCAACCATAGTAGTCTTTTACAATAAATCCAAGGATTA
TTAAAAGATTCTAATAAATAGTTGAAACAGACTAAAACAGCTAGACTAGAATAAAGTACC
AGACCATAGTAAGAACCGAATAACATTCTACTATCGTTTCGCAAAGTTCCTTGATCGATC
AGAATACCGTTATTTAAAATTAGAAAAAACGCGGCGGATTGTAAAACGGAACCGTAGGAT
>NZ_CHER02000064 Leptospira kirschneri ctg7180000004938
CTCATGACCTTCAGTTTACAAATTGAAGAAGCTGTTCTAGAACAAAGACGCGCAACGGAT
GAAATCACAAAAACGATCATGAGTATTTCCGACGGTACTCAAGAAATCGCTTCGGGCGCG
GATGATCTTACTTCATTCTCCGGGAACATACACGGACAAGCCAGAAATCTAGGCCAATTG
ATTGGCAAATTTAAGACTCATTGAACTTGATGACACTACAGATCGACTATTTATTTTCTT
AAGTAAATTTTAATGAACATGAGCAGGGCAATTTTCTAAAAGTATGAATTCCTACAATTT
TAGGATTTGTTCATAAAATTGTGATTTGCAGTAGTTTTCACATTTGAATACGACAAATTC
AATTGTTATAAACTTTTATTTTAAAATTGTCCCAAAACAGTCCAATGTGGAACTACTACG
AAAATTTAACGACATTAGAACTGCTCAAAAGTTCGCAAATACAACCGTCCAATGTAGGAA
CTGACTGCATTTTATTAGAAATCTCTAAAGAATTATCGTGTAAATTCTTTGAGGTTTGAG
GGCAAGCTCTTTATAAATTGTGGTAGTTCCCACACTTTAGGAATCGATTCGCAAAGTTCA
GATTTCAACTTTTCATAAAAATAAATTAGGACCGAACCCACTCAAATAGATGATAGTCAC
AAAATAGCAATTTCATTCAGAAATTTGATATTACTACTCGAACGTATGAATAGAATACTT
GGGTTACTTTGTTTCAAAAATTTGAATATTTTGGTCCTGTTTTAAAATGCAGTAAATCCC
GAATTTGCGGTATTTTTTAAGTACTACTATTTTTTTCGTAAATTCGGCCGTTAATAACTT
GGTACTATTTTCATACGTCCGGGTAGTAGAATTGTTGCAAAAATCAGTTTCTTTCGTTTT
TTCATTAGAGTTGTTGAAAAATTAATTCTTGATCTGTTTGTATTGGATTGAAATGGACAA
TTGAAGTAATTTTACGAATCTTCACTATGGAATTTTTTAACAACTCTATTAAAGAGAATC
GATAAAACCAACCGTTTTGTTAATCATAATAACAACTCTGTTTCTTTTTAGATTTGATGG
AAGTTACTTCAAAAGGTATTTGAGAGAAATAAAATATTTAGGCTTTGTTTTGTATCAAAG
TAATTCAAATCAGATTCTTATAAATGATATTGCTATTTATAATTCTTATTTAGAACGTCT
CTTTATAGATGAATATTTGAATTGATGAATTCATATTTTTAGATAGAATAACTTTTCCTC
AGTTTCAGATACAAAAAAAGGTTAAAAAGTAACATGAGCATTCGGTTTCGAATTTCGCTT
TATTTATCCATAGTTTTATTTCTTGGATTTAGTTTCCTTGCCGTAGTCAATTCAGTCATC
TCTTATGATAATTTAAAATCAGAAGTAGAAAGTAATTCCGCTATCACTTCCGAACGTTGG
TCCTTAGAAGTGAAGGACACATTGGACTCGGCTATGTTCTATGCAAGAGGATTTAGATCC
CCTCTGATCTTCACTTCCCCTGCTAGAGAATCCATCATCGTTTCCATTAAAGAAGTAATT
GAAAGAAATCCTAACTTTTTCGCCCTCTGGCTGGTCTTCGAACCGAATTTATACGACGGC
AAAGATTCCCAGTATAAAAGCGCATTTGCACACGACTCTACTGGAAGATTTATTCCCTAT
GTATTTCAATCGGGCGAAAAAGGAAAAGCAGTGATCAGATCCAGCATCGGGTACGAAAAT
CAGGACGGAACCGGGGATTTCTATCAGATACCTAAAAAGAAAAATATCTACTACGTTTCA
GAACCATATCGTTATAAATCTGAAAATGTAGATACGATGATGATCTCCATCGTCGCTCCT
ATCAGTAAAGACGGCTTCTTTAGAGGAGCCTGTGGAATTGATTTAAAAGCGGAAGAATTA
CAAAAGAAATTCGGAGAAGTAAAACCATTTCGGAATCAAGGATATATGACTCTGATTTCT
CCGAGCGGACTTTACACAGTAAACGGAAAAGATCCTTCCTTAATTGGGAAAAAAATTACA
AATCCTCAAGAATTGGATCTATTTTTAAAACAAAGCCAAGAAGGAAAAAATTTTACATTC
AACTCGGATGAACACACCCACTACTACTTTCCGTTTCATGTAGGTAAAGACAAACGTTAT
TGGGTAATGCAAGTAAGTGTTCCTGATTCTATTTATAAAGATGAAATGTTTAAGACCATA
CTCACAAGAGCTTTAACCGCAATTTTGATTTTAGTTTCTGTTTTAGTTTGTCTTAATTTT
ATATTCCAAAAATTGATTACTGCCGGTCTTCTCAAAGCAATTGATTTTTCCGAAGAAATC
GCTGACGGAAACTTAATCGCTCAGAGTTCTCACGATAAAAAAGATGAAATCGGAACTCTT
CTCAGTTCCATGAATAAAATGAGGGAAGACCTTCTCAAGGTTCTGAGAGAAATTGGCGGT
TCTGCAAACACTCTCAGAGATACTTCCGAAAAATGGCT
>NZ_CHER02000063 Leptospira kirschneri ctg7180000004941
TAAATAAAATATAATAATTTAAAACTAATTCTTATGTTGGTTCCAAGACCTGAGTATGAG
CTCTCTAAATTCCGAAAAAAAGGGCTTAATTTTTACTATTTGGAGGTTTGAAAATAGAAA
TTAAATTTATGGTCATTTTGGAAAAATACAGAAATTTTCTAATTTTGAATCTAATTCGAA
AATTGTTTAGAGAGTTTCAAAACGATCACTTTGAATATACAATCAAAACTGAGATGTTTT
AGTTTGTTCAAGAATGTGGGAACTCATACAAAAATTGAAAAACTTGTTCGTTTACAATAC
GACGTAATTTAAGGGAACTACCACGTTTTATTTGGGTTCAAAAATTTATCTTGAAATAGA
TTCTAACCTTGTCCCCTACCCTTTTTATTTTGAATGGTAAACCACTTTTGGAATTTCCAA
TTTCATTCTCATCCCAGTTTCAAGGGCGTTTTTTGTTTTTTAAATAATTCCAGTCCTCTC
ACAGGGTTAGGCGAAAATTCTTAAATTGTAGCTGACAGAGACTTATTTTATAATTCTCTG
TCTCCTATGGAGACTATTTATGTCTACACTTTTTGAAAGACTTTCCGCTATTGACGACGA
CCTAAAACTGAGTCACAGCAGGATGGCCGTGGAATTGGGTGTCAATCGTTCTACTTATTA
CAAATACAAAAACGGCGCTCTTACTATCCCTAAATCTATTTTGATCATTTTAAGGCTTAA
AGGTTACGACGAACAGTGGATTCTTTCCGGTAAAGGGCAAATGAAACTCAAAGATTCCGT
TCATTTAGTCGAAATGCAAAAAAGGTTAAAACTCATTTCTAAACTCGACTCTTACGGTGT
GTTAGATTCTATTGATAAATTACCTGAAGTTCCTTCTTCTGATCAAAAGAATATCATTCG
AGAATTCTTCATTTTCTTAGCTTCTAAATTTGTGTAGCCGGTCATTATGAAAGAACTCAA
TAATTTTTGAGGATAAAAAATAACATTTTTAGTAAATTTACAATCATTCTATTATAAGCG
AAAACAGAAAAGTTTAACTAAATAACTTGCATAAAAAATGCGAAAAATTTCAAGTTCGTC
AACAAACTAAAATTGAAAATAATTCTTTCAAAAAAAATTCCGCTTCCCGTTTTTTGTACT
TACCAGTTTCTTTATTTTAGATGAAAATTATAACAATTACCAATATCAAAGGTGGAACTG
GAAAGTCTACATCGGCAGTACACCTTTCTGTTGCACTTGGACGTAGAGGAAAAACCTTAT
CCGTAGATATGGATCAACAAGGAGATTTAACAGAATTCTTTTTTCCAGACGAATCTCCCG
AATCATTTGATCAGGCAAATGCTTATACAGTGTTAAAAGCAGAAACTACTCTTATGGAAT
CTGTTCGGTCATCACACGGAATAGACATTCTTCCAAGTGTTGAGGATCTATCAGAACTAA
CTTTTCAAATTGCAAAGGATTTTTCCTTAATTCAAAGACTGAAGAGAGTATTAAGGGCAT
CTCATTATGATTTTATTATAATCGATACTCCAGGATCTATTTCACCAGAAACAATCTCTT
CCTATATTGCAGCCGATATAATTTTGGTTCCTATTATCCCGGCAAAATGGGCAATTCGAA
GAGTAAATCAAGTCCTTAAAAAAGTATTACAGGCAAAAGAATTCGAAGGAACAAACATTT
CAAAAGTTCTCATACTTCCAATGTCTTGGGGAAAATCACAAAAGCAGATAGAACTTTTAG
AAACTATTCGCAGCATTTCGGGATTAGAAATTTTAGAGCCTATTCCATTTTCCACATCTA
TTAAAGATAGAACCGAATCAAATGTTCTACTTCAGGAAGGGAAACCTGCTTGGATTGCTT
TTGATTCTCTTGCAGAGGTTCTATTAAAATGAAAAAACTAGGATTCAATGCAAAAAACTT
AATTTCTACAGAAAATCAGACGCCTAAGAAAAAAGATTCATATTTCCAAGGTTCGTTGAC
GAACCTTTTCAGTTCCAATGAAATTACGGAAATTCTTATCGACTCCATAACCTCCATAGA
CAACCCGAGAACGAATTTTAACTTTTCCAGCATTAAAGAATTGGCAGCTTCTATAGAAGC
ACACGGATTATTACAGCCAATTACAGTCAGAAAAAAAGGTGAAAAATATGATTTAATTGC
AGGTGAAAGACGACTTCGAGCATATCAATTTCTAAAAAAAGAAACGATACCTGCAATAGT
TAAAAATGTAGAACAAATAAATCCAGAGAATCTTACGGAAATAAAATTAATAGAAAATAT
CCAAAGAGAAGATCTATCAGACTTAGAAATAGCCTTAACGCTCTCAACATTAAAAGAACG
AAAAAAAACAACGAATGAAGAACTAGCAATTAAGATAAACAAAACCGAAGGCTGGGTTAA
AGCTAAAATTGCCCACATAGCAACACTTGAAACACTTATGAAAAAAGGTTCGTTAACGAA
CCTTAATCTTTTTCAAGAAGTCCCGACTTCAGTATGGGTAGAACTATCTTCTTCAGTAAA
AGAAAATCCCAAGGCAGTTGAAAATTGGTTAAATTCGCATTTTAGTAAAAAAGAAATCCC
AAAACAATCGGAAGCAAGAATATTTGCGAAAGGTTTAAAAACCGCAAAGTTAAAAAAGAA
TAAAAATTCTAAAATGGAAAGTCTTGAATACTTACAAAAACAGGAAGAAGAACTTGCCGA
GAAAATCAAAAAGTTACAAAAAAAACGAAAAACCATCTTAGCAAAAATAGCTTTTATTGA
AAATTCATAGTCGTTAATTTGATATTTTTTTGGATTCAATCAAAAAAAGAGTACCCAAAA
TTACACAAAGATTATAGTGTACCGATACGATCTAAGAAGAATTCCTCTTCTCGATTCAAG
ATCAAAGCCTGCGGGGAGGTCAGAGACCCCAAAGGCAACCTCCTTCCAAAAGCTACAATA
ATTTAGTTATGTCCCATTTTTTGCTTGACATTTGTCTGGTACATGTTTCTAGTCCAAAAT
ATCTTAGGAGACATAACTAAGAACAGCCTCTCTGACTTAATGGCTGAAAAAATCTTGAAT
CGAGGACCTACCGCAAAGGCTCCATGCCTGACCCTTAGTTCCCCGTATTTTAATAGAGTA
GGGTAAAAACTAACCTTTACCGTGCGTTACCCGAAATATGTCCGCATGGTAAAACAAGGG
ATACTAAAATGACCGAGGTCGTACATTACGCTTTGGTGATAGCTCATGCTATCGAATCAT
TACCGCTTTCAAGAGCAAAAAGACAGCTACTGTCTAAAATCACTGACTTAGATATTGCAG
GAAGAATCAACGGATTTGGTGGATGTATTGCAAAAAACAAAACACTAGGCGAGGAAGTAG
GCTTAGCAGAAACGACTGTTTCTAAATATATTCGAGAAATGAGACGAGAAGGATATATAA
ACTCTGGAGAATTCCACGGACATTATAGAATACTAAACTCTAG
>NZ_CHER02000053 Leptospira kirschneri ctg7180000005004
GTAGTTCAACTGCGTTCTTCTTGAACTCTTGTCATATTGTATCATGCTTCTGTATTCTTT
CACTCTTGTACGATCCTATCCAATAATTGAAGGGAAGTACAAACTCCAAAAACACATACA
AAAAATCTATGGATCTAATATTCCATTGAATATAGCTAAATTTGAAATCCCGAATTCTTC
CCTCCATTTTCCTCCAATTTCCTCTTTTACAATTTTACCTGCTCTTCAAACTATTAAGAC
CACAACAAAACAAACTACTATCTTTTGATTTAAAGAGTTTTGGTCTTTATAAAACAAGGA
CTTTTATTTAGGTGAATGTTCCTGAAGAAAACAATTCGGTTTTGGCTGTCTTTATATCAT
GGAAATTATTTATTTCTTTTTAACATGCCCTACCCTACTTACTCTTGAAAGAGCATCGAA
AATATTTCAACTTCACTTCTAACTCATTGAGGATCACTTGAATATAAATGTTTTACTTAA
ATCTAAAATTTGATCCCAGAGATTCCTTTTCTCTTTTCAAGATCCAAAACAAAGAAAATC
CACTTCCAAACCTCAAATTTTCAGAATTTTAGGGGGTCGAAATTTGACCTGAAATTTCCT
TAAATCGAATTTCTTTAAAAAATGGATTCAAAGCTATAGAAAGAACATGCTACTTTTTGA
ATATTCTTAGAAATTACCTACTTTCTTAAAAAATATGACTTTTTTCAAATTGTCCTGTTT
TGGCTCGTTTTTTCCTGGATAGAGATTCTTAAGAAAAGTCAGATTCTACTGTCTTCCTAC
AACAAACATATTCCTTTGATAAAAGGGCCTGTTTTTTGATATGAATCGAATAAACATCTT
ACTGACTGAGATTTTTATTTTGTCGAAGGGTCATAGAAGTGGGAGAATTTCTGTGGAGAC
TCATTCTAAGTTTTTATACGTAAATTGATTTTGTTCAAATAAAAAAACTTGAATCAAAAC
CTGATCATTCACTAAAAACGGAGGGATTTTAAAACTATTGAACAGTTCGTATTTAGAACT
TGTCCCAAAACCTCAAGATGTGAGAACTCACACAAAAATTTAACAATATTAGAATTGCTT
GAAAGTTCGCAAATTACCAAATGTGACGGTTTTTGTAGGAACCATTGTGTTTTATTAAAA
ATTTCTAAAAAACTATCATGTAAATTCTTTAAGGTTTTGGGACAAGTTCTTAGAACATTC
TTTAGTTTATTAGAAGGGCCTTAGTATTACCGTTATGAGTTGTTTACGTTTTAGAACTTT
AGGTAAAAAATTCTGACTTTTTATAAACCTACTACGATTCAAAAAGGTTTGTATCTTTTT
TGTTTCCTAAAGAAGATACGGTTCTAAGATTCTATTTGAGGCAAGTCAGTTTTGATTTTT
TTAAATTCGAGCCTCTAAAAGATTCGAACTTCATTTTATACTTACGCCCTTTTGGAAGTT
TGACTACCCTACTCTAAAAACTTCGTACGGATCTTTGTTTGTAATGTTAATCCTTTTTTA
ATTTTATTTTCTTTCTTTGGCATTTGTTTGAGTTCTTTCAAATAACTTTGGAATTGTTTC
TGGACTTTCTAATTGATTGTACTAAGGCCAATCGATACTTTCCATTTTAACCAGTGAACT
TTTTTCCATTCTCCTAAAACAGTTCTGTTTTGATATTCAAGACGAAAAAATCCTGATAAC
ATAAATACCTTTCTGAGAAAAGAAACTCAGATAATCAAAAATGAAATATCGGAAAATAAG
AGAAGTTTATCCTGATTTTGTAATTTTGATTTTTATGAAACAGGGGTTTTGCATGTGAAA
AACCCTGTAAAACCCCACTTCCGAGTTTTTTAAAAAAGTAAAATATCGGAAACAATACAA
GTCGAAAAAACGACTGTCTCTTTTCTACTCATTACAAAAAGAATTCAGAATGAAAAACTC
CATAAAGGTCCAAATCATTTTTGAACCGGATGTATTTTGTCTCCAAAAAATCTGGTTCAA
AGATAGTACATTATTGTGCCGAAATTCGTAGATATAAATGACTTTTGTTTTCTACTTAAA
GTTTCAAAACGTTTCTAGATCTCGAATTCCAAATAATCACATCTAAGGAAAGAAGTTCTT
TCTATACCCTTGAAAACGAATGCCCTACTTCATTTAAAAACAATCCTAAGTTTGTTGTGA
GGAAATTCGAGGAAAAGTGAAGGATGAATACGAAGTTCAAAGTCCAGTTAAAACTTGTGA
TTTGGCGTAATCAAGTTCGCAAGAATCTGAGAAACGGGCCTAAAAAAGTATAACAAAAAC
TATGTTTTGTTTGATAGACTGAAATTGATAAGATTGCTGACAACCCTTCGTATTCAATAC
TGAGTGAGGAGTGTCCGATCTGTTCTTAACTTTACAGGTTATATCACTCCATAGTCTTTC
AATTCTTGTTCTGTAAATCCGGTAACCTTTAATACAAATTCTAAACTGGCACCATTTAAT
AGCATATTTTTGGCATCTTCGATGGCATCTTCAACTTTACCTTTCATTTCACCTTCTTTT
CTTAATTTTTCAGCTGTTGTCATAATCAAATCCTCGTATTCCCTATTATACCTTGAATGA
CTGAGTAAACTTGTAATTTCAGTCGGTTCAAGTTCTCTTACATTAAATATATACAAAAAC
AGTTTTTGGAAAATTTCAACCCTTTTCGATTCGTTTTTTAGACCTGTTAAGAGTTCAAAT
ACTTCTCCTAAATAACCTAAAAATGAACTATCCCCTTCCCATATTTTTTGAACCACTCCT
AAAATCACTCTTAGGGTGATACTTTCCAATCGGTTTAGATCCACTTTCGACAAATCAAAT
AGTTCTAATTCAAAATCTGGAATGTATTTTTTAAATACTTCCTCTTCGTTTTTAGAGAGT
ATAAACCTGTCTTGAAAACTATTTCCTAAAGTCCAAGTCCTTTCACCGTGATAGAATACA
AACGGAATCACAACTGAATATCTTTTATCCGTCCTATACTGAGATTTGTAGATTGCGGAT
ATATATCCTAAGAGTTGGCTAAAGATGGAATCGTCTAAATAACTTTTATGTTCAAATAAT
AGATA
>NZ_CHER02000052 Leptospira kirschneri ctg7180000004949
CAATAATGTTGAATACAATGAAACTTTAAAATACACAACGACCTTTCTCCGAAAGCCGCC
CTTCTGTCCTCTGTCTAGAATTTGCGAAGCAAATTCGTCTGTCTTCAGTCCTCTGAACGG
GGTTCGTATTGCTGCGTTAAACGAGGCGGGCGCTCTTGCGTATTATCTAACCGATCAAGT
GGATTCCGTCTCTACCGTGTTAGATGATGAGGGGAACACTCTTTCTTTGATGCAGTATCT
TCCTTATGGGGAAACGTTTGTGCAACGGGGGGATTTGAACTTTTCTCCTAAGTTTAATTC
GCAAGAATTAGACAGAGAGTCTGGGTTTTATTTTTTCAATGCAAGATTTTATGACCCGGG
GATTGCTCGTTTCACCAGTGCGGATACTTTAATTGACGGGGAATTGGATACCCAGGGTTG
GAACCGTTTCTCGTATGTGAAGGGGAATCCGATTGGGGCGAAAGATCCGACTGGGCATTT
GGGACAGATGATTCCAATTGCTGTGAGAGTTGGACAGAGTATAGCAGCAGCCGGTATGGC
TCTTTGTTCTTCCGGAACAATCAACTGTGGAGATATGATTCCAAGTAAGGCTGACAAGCC
TAGAGACACTTCCGTTTCTCCAAATGATGCGAAACAGATGGAGAAGGCTGGTCTTGATCC
GTTAAATGCAAAAAAAGGATCTCAAAAAAGTATTGGCGATGGCGGTAAAAATGGATCTGA
TGTTGGTGAAAAGTCGGGTGTTAGTAATAAAGGAAATAATACTGGGAATAGAAAAGCTGA
TTTTATTGTTTCTCCAGATGGCGCAATAATGCATAATTCTCCAGGTAAAGTTAAAGATTC
TTTAAGTAAGGCTGGATTTCCTACTAAAGAAAGGGACCCAAACAAAAAAGAAGGTGGAAC
TATTTTTAATATTCCTGAGAAAAAAATGGATGTCCGAATTATGGATGGCGGACCTAATCA
TCCTCCGAGAGTTGTGACAACACGGGAAAATAAAAACATGTCAGTCAACCCCAATACAGG
AGAAAATTTTCGTGGAAACATGAAAGCCAGTGAACAAAAGTCAAGAAACCATATGTATTT
TCAATAAAATACAGGTTATAGTATGAAAAATGAAATTATTCAATCAGTATTAATGAAATT
ACTCTATGGAGCCCAGCTTGATAGTATCAGGGTTTACAAAATATTTTTAGAGATAGAGTT
TAATCAAATTGGTAAAAAAGAACTTCCTATTACTATTTGGTTAACAACAAACAATTCACT
TTATGTAAATACGGATATTACTTCAATTGATCGCACCGCTGATTACTATGAGAAAAGAGC
AACCGTAATAAAAGATTTGTTTTATTTAATAGGTGAAGAGGTGTCTTCTGTTACGGTTTC
GGAAAAAGGTGAGCTTTCAATTGTTATAGGCGACAAAACTTTATTTCTATTTCGGGAAGA
AGACGAATTTGAAGAAGTTTGGGAAGTTATGGATAACTCGACGAGTAATGATTCAAGAGA
TCACAATTGGTACATCGCCTTATGCGATGATGGAGATTTTGTGCTAACATCACCTTGAGA
ATGAAAATACATTGAACCTCACAAAAACTAAAAAAGCATATGAAAAAGCATAGCAGATAG
AGAAAAATAAAATCGCATTCTAAAACTAGAATATAGCGAAAATAACATTTAATTACCTAA
AGATCTTTGAAAACGATTTGCTTTGAAAAGAA
>NZ_CHER02000049 Leptospira kirschneri ctg7180000004963
TTGGAGGAAAATGGAGGGAAGAATTCGGGATTTCAAATTTAGCTATATTCAATGGAATAT
TAGATCCATAGATTTTTTGTATGTGTTTTTGGAGTTTGTACTTCCCTTCAATTATTGGAT
AGGATCGTACAAGAGTGAAAGAATACAGAAGCATGATACAATATGACAAGAGTTCAAGAA
GAACGCAGTTGAACTACAGATCAGCTTTTTGTTGAAAGATTAAATATTTCTGTAAACTTG
GGATCTTGAAACATTAGACGCAGATTATTTTCCTGATTTGGGGGAATGAAGAACTTATGT
TTACGATAAAGTGTAGCATATTTCGTTTCCACATAAGTATCATATTCTTCAGATTTTCGA
GGAGCAATTTTTTGAATCGTCTTTAAAGACGTATTTGAAAATTTCAAATTCTTAGGATTT
ACAACTCCCAATTCAATAAAACCTTTTGTTTTACGGGAACAACGACAGGGATTTATTTTA
TTTACCAGTCCACATTTTTCATTCATAAAATTATAAAGATCTTTACGGGCTCTGGATAAT
TTTTTTCTAAAATTTGTCCTGGAAATGTTCATAATTTTTGATCCGACCATATCGCTTACA
GAAAAAATTTCTCCAAGTATAAAAATAATTCTTTGATCTCGATTCAAACATAACAACATT
CCTGTCATACAACTTATCTTTGCCTCTTCAATAAGAAGTTTTCTTTCTACACCTTGGGTT
TCTTCTTTTGGTAGGCTTTTGTTCTTTATAGAATCTAAATCTTTACCATAACTAGAAAAG
GAAGAGGACATACTCTCTACTTGGCTTTTCTTCATGCGTAACATGTAGTTAACTGCAATC
CTATAAATCCAAGTACTAAGTTTACTTTTACCTTTAAAAGTAGATAACTTTTGAATGACT
TTTATGAGAATTTCTTGTGTAATATCTAAAGCTTCTTCAGGATCATAAACCATACGTATT
ACAATATTATAAATCCAAGGCTGATGTTTTTTGATAATTTCTTCGATCGCTTTTTGATCT
CCTTTTTGTGCAAGTTTTATCATGGAATCTTCTTCAAGAGGGGATGGTTTTTCTATAAAA
GGATTGTTCATATTTTTTTCCATTACAACATGTTTACTACTCAGAATGAATATTTAGAAT
TATATCTCTAAAATAAGGATTCGTTTCAAAATTATTATGTAAGAATCAGTAATGATTCCT
TTTGGATGAGTAGTGAATTTTATTGTTCGAATTTAAAAACTGTCCAAAATCTCGAAAATC
CATAAACGAACTCAGATAGAACTAATCACAAACGTCCTAACGAAAAGTAAATGTAGTTCT
CTGCTTTCAATTTGTTTCCGAGTTTTGGATCGTTTCTATAAATTTATTGCCGTAAAAGTG
TAATCATTTAAAATCTTAAAATAAATTTCTAATGATAGATTTCTGCAATAGCAAAAATGG
AAACACCTTCACTTGGATTATTATGATCAGCTTCTACCATCAAACTAAAATACTGAGAAC
AAATGGAACTTGAAGCCGCATTTTTCATAGCCTTTTCCGCTGTTTCCTTATTTTTCCAAT
AAACTAAATCTACCCATCGGTTATTAGAACTTTTTAATAATTCACGTTTTATAAATCCTT
CTTGTTTCGATAAAAAATTCTTTTGTAAATCTTTGGAAGTTTTTAAAAGTAAACTTTCGT
TCTTATCGTCTAACAGAGTAAAAGGTGCCCATTCTATAATCCATTCCGTTGATACTTCAT
CATTTTTATTTTTAATCATTTTATTCTTAACTCCAAAATAAGATTATCAATTCCAAAAGT
CTAACGTTGTAAAATTTCTCCTCAAACTCAATTAGGTAATCAAATCTATTTTACGTTTGA
AAATGAGAATGGTATTAAATTTGACACTCGTTAGATTTTCTGGTAATATTTTAGATGCTT
TAAAAAAGCAACTGTGACAGTTGAAAATTGAATTTAAGAAAAAAAGGAAAATAAATTTAT
CTTATCTGGATTAATCATACCCAGTATCGGGTATTTAAGAATTTCATCTAAGTTCGGAGT
ATCTTCTCTGTCCTACTTTTTTAGGCCCTAGCTCGGATTCGTTTAAACTTGATTACGCCG
GATCACAAGTTTTCGCCGGATTTAGAATCTTGTATTCTTCCCTCACTTTTCCTCACAACA
AACTTAGGATTGTTTTTAATTGGAGTAGGGCATTCGTTTTCAAGGTATTTAGTGGAGTCA
AAGAAGACGTAAATAACGTGAGTTCGACATAAGAAAACCGGGGCGAATCCGGCTTGCCAC
AGGCAGCCGGCCGGGCTCTCAGCTCTGTTCAATAAATTGCATACAGGAAACATAATACAA
CAATCGTCTTTAGATTCAATTTATTGACCCTAAAACGCGACCCTTAGGAGAGCGTTTTGC
TTTAGTTCATTCATCGATCCCTTTCGCGTGTTAGACCGAACTCACGTTAAAAAAAAGCGG
TCGTACTGGATTGAATCAAAGAACTAATTCATAAAAAAGAAAATGAATCTTTACAAATAG
AAGTAATCTCCATTATTAAAAATACCATGTCTGATATGACAAACCCACATGATCGTTTAA
TCCGGGAAACCTTACAGGACAAAGAGGATGCAATTTCCTTTTTTAAAAATAGTTTACCCG
AAAAAGTAATCGAACTTTTGGATCTAAACGGATTAGAACTAACACAATCTAGTTTTATTT
CAGAAAATTTAAAAGAAGAACAAACCGATCTACTTTTTCAGATTCCACTGAAATCCGGTA
AAAAAGCAAACGTCTATCTATTATTTGAACATAAAAGTTATTTGGATGAAGCAGTCTTTA
GTCAACTACTAGGATATATATCCGCAATCTACAAATCTCAATATAGGACGGATAAAAGAT
ATTCAGTGGTGATTCCGTTTGTATTCTATCACGGTGAAAGGACTTGGACTTTAGGAAATA
GTTTTCAAGACAGGTTCATACTCTCTAAAAACGAAGAGGAAGTATTTAAAAAATACATTC
CAGATTTTGAATTAGAACTATTTGATTTGTCGAAAGTGGATCTAAACCGATCGGAAAGTA
TCACCCTAAGAGTGATTTTAGGAGTGGTTCAAAAAATATGGGAAGGGGATAGTTCATTTT
TAGGTTATTTAGGAGAAGTATTTGAACTCTTAACAGGTCTAAAAAACGAATCGAAAAGGG
TTGAAATTTTCCAAAAATTGTTTTTGTATATATTCAATGTAAGAGAATTTGAACCGACTG
AAATTACAAACTTACTCAGTCGTTCTAAGATTAGTAGAGATTACGAGGATTTAACCATGA
CAACAGCCGAAAAATTAAGAATCGAAGGTGAAATTAAAACTAAAATTGATATTGCCAGAA
ACATGTTCAAAGAAGGATTCGAATTAAACGTAGTCCTTCGGATAACTGGACTTACAGAAC
AAGAGTTAAAAGACCATGGTCTTTTATGATTATATCCAAAAAGTTAGGAAATTAAAGTTC
GAGAACTAGAAGAAAAAGGCTATAGTTTCATATATATCGAAGATTGCGTTAAAGGTTTTT
ATAAAGGTTATTTCGAATCTAAAATCAAAATTGCCAAAAATATGCTATTGAAAGGTGCCG
GTTTAGAATTTGTATTAAGTGTTACTGGGCTTACCGAACAAGAATTGAAAGACTATGGAG
TGATATAACCTGTAAAGTTAAGAACAGATCGGACATTCCTCACTCAGTATTGAATACGAA
GGGTTGTCAGCAATCTTATCAATTTCTTGATAGCCTATCGAACAAAACATAGTTTTTGTT
ATACTTTTTTAGGCCCGTTTCTCAGATTCTTGCGAACTTGATTACGCCAAATCACAAGTT
TTAACTGGACTTTGAACTTCGTATTCATCCTTCACTTTTCCTCGAATTTCCTCACAACAA
ACTTAGGATTGTTTTTAAATGAAGTAGGGCATTCGTTTTCAAGGG
>NZ_CHER02000046 Leptospira kirschneri ctg7180000004935
TTCTAAGTCAGGTCGATTTAGTTTCAGAGAAGAATGGTTCATGAACTCATGAATTACTTT
ATCAACCGATATATAGTCTCGGAAATAATTGAAGTTCTGGTTCTCTAAGTGATCAACTTG
ATTAACCGGCATGGATAATTCTTGATTCGGTTGGGTTATATGTGTTTGATTATCCTGATT
ACTTTTTGGATCTAATTTCTTACTTGAGTTAAAATTCTTTTTGTTCTCTTGCGTTTCTTC
TTTTACAAATTTTACTTCTGTTTTAAGTTTTCCTTCTTCTCTAAAATACTTAGTAACAAT
CACTTTGAGAGAATCGTTTATTTCCCCTACTATACTCAACTCCTCATTTTCGAATTTGAT
TCTAAGTCCTTTAAGATTTTCGTAGCTGGTTTTAGAAAGTCTTTCCTTTGCCCAAACCAA
GAATCCTTCCCAGGTAGGTTCATTCTCATTTTTAGACGGATCAGTTACCTCGCTCTCGAT
CTTTACTTCTTTCTTATTTTCCGCGACCAAAGGGTCTTTGTTTTTCACTTGTGTGAGTAA
GTTATATGTGTTTTTTATAATGTCCTTGTAAGAGTAGCTGGAGGCTATGTTTACAGGGAT
CGTTCCCCAAAAACGGTCCCCTTTATATTCTTCCGATTTACGGATATGAATTAGCTTCTT
CAAAGTTTCTAAAACGACTTCCGGATCTTCCGGTACTAACTTTTTCCAGGACTTGATTTT
TGAGTCCTCTTTTTCCGGGTTGTGGTCGTATTCCCCCCATTCTTTCAGTATGAGGCTTTT
AGAATGTTCAAGAATATTCATCCAAGTTACTTTAGAAAAAGAAGAACTTTGTATTTTCTC
TTTGTTATTTGTTTGGTTTGTACTTTGGTTATTAATACAATCCCCCGTACGTTCGTACGG
AGCAGGCCCGGTATTTTGGTTTGATCTCTCTAGGATATTTGTGCTAGACAGGCTAGTATA
TTTTGTTATCTGTTTTTGTAGGTTATATTCATAACGTTCTTTTACAACTGTATCATGTAG
ACTAGAGTTTAGTATTCTATAATGTCCGTGGAATTCTCCAGAGTTTATATATCCTTCTCG
TCTCATTTCTCGAATATATTTAGAAACAGTCGTTTCTGCTAAGCCTACTTCCTCGCCTAG
TGTTTTGTTTTTTGCAATACATCCACCAAATCCGTTGATTCTTCCTGCAATATCTAAGTC
AGTGATTTTAGACAGTAGCTGTCTTTTTGCTCTTGAAAGCGGTAATGATTCGATAGCATG
AGCTATCACCAAAGCGTAATGTACGACCTCGGTCATTTTAGTATCCCTTGTTTTACCATG
CGGACATATTTCGGGTGACGCACGGTAAAGGTTAGTTTTTACCCTACTCTATTAAAATAC
GGGGAACTAAGGGTCAGGCGTGGAGCCTTTACGGTAGGTCCTCGATTCAAGATCAATTTC
GGCCTATGTTGCAGTGGCCTTGTCTTAGTTATGTCTCTAAGATATTTTGGACTAGATACA
GGTACTATATGCCTGTCAAGCTAAAAATGAGACATAACCAAATTATTGTCGCTTTTAGGG
AAGGAGGTTGACCTGCTTCAACTGCAACATATCCACAGGTCTTTTGATCTCGAATCGCGG
TGAACTTTGATTCAATGTAATTTTACTTCATACGAATTTGAGTACAAGTATTTTTTGCTT
TTGGGGAAAAAATTTTAAATTCTCGTTTGAATCTTGATTTAATAGTAATTCAAATGGGAA
ACGATTTTCCCATTTGAATTATAAATGTTTAAGATCGTTCTTAAGATCTGATACTTTGTT
GTTATATCTTTCATTTTCCCTGTGTAGCTCCTCTTCAATGAATTGTCTAATAAAATCTAG
ATGCATCTTATTGAATCCTTTTTTGCTTTTACCGCTTTTTTTATAAATAGTATAAAGTTT
TTTCCCTTTAGAGTATTTATAAGTTGTTTGTTTAGGATTTATTTCTATTTCGACGCGTTG
TTCTGGTTGAGGTAAGCCAGTTTCTTGTGTTTTTATTAATCTTACAGCTTCGGCCATATT
CTTGCAGCCTTTAACTAATTCTCTGTAAGAGTATATCCTTAGATATGTGCTCGCAGTTCG
TCTGTCAAAGCCCAAGTAGGCTTTGTTTTTTTCAATGTAAGGAATAAAATTTCCGTGTCC
TATTTTTTCTTTAACTTCATGCAAATATTCACCAAAATCAATTGAGTTTCTAACAGTCCT
TTTGTGGGCCATGATAACTGATTCATATAAATCCTTTAATTGGTTTATCTTTGGATCGAT
AGATTTAGTTTCATTTGGTAATGTTATATTATAAGGTTCTTTTGTTTGAGATCTTTTAAG
GGATTGTTTAAGTAGTTCTTTTTTAGTGAGTTTATTTTTTTCGGCCATTTGAAACCTCGT
TAGCTAAGATTAAAAAACGTTCAAATGCTTTATGCTTTCTAGGGTTTAAAAATTCTCCAA
GATTCGAAGCTGTGTGAACTGCATTGTCATTTATGTTAGCAAAAGCGCTAACGTTTAAAC
CGTTGTGTTCACAGACTTCAACAAGCTCATCTAATTTGCTATTAGAAACTCTTGAGGGTA
CTACAGTAAATTTGATTTTTTTCTTTATCGTGGATTTAATATCTTTGAAAACTTTTAACA
TGTCATCAGTTCCGTCTATACTCCAAGAGCCGTACTCCATTGGAGAAATCACATGATCTG
CAGAATGTATTGCGGCAATTAAAACTACATTTACTACGTTGTGAAGATCCAATAAAACAA
ATTCGTAATTGAGAGATCTTAGGAGTTTTTCAAAACGATATTTAAGATTGAGGTCATCAT
AAAAATCAATGTCTACTTTTTTAAGCCTTTCAATAGCGGGAATAAAATCTAATCCGGCTG
TAGATTTAATGATATATCTTTCGTAACTATCATCATCAAACAACATTTTATAGGAATTTT
TGGTAATCGCTTCCTCCTCATTTTTTTGAAAATGAGTAAACATAAATTTACTAAGACTCC
GATTGAAATCGTAATCGATTACTAAGACTTTTTTACCTAAATGTACTAATGTTTGTGCTA
AATAAATCGTTGTTGTGGTCTTTCCAACTCCGCCTTTGCCTGAGCAGATCGGTATTATTT
TCATAATTTAAAAAACAAAAAGTAGAAAATTTGAGAAAGCGCAAAATGAAAAAAAGTGTA
AAAAAATGAAGTGAAATTAGCTATTTTCAAATGGGAAACGAATTTCCCATTTGAAAGCCT
GATTAAAAATTAAATGATACTTGTGCATTGTAAATTCTCATATTTTCATTGATTAGTTAG
ATTCCTCTTTAATTGCGTTTAAGAAGATCATATAAAATCAGATAATATTGTTCAAATCTA
TAAAGATGATTCTATGAATTTATCTAAAAAGTTAAATGACATTGATAGTCTTCGAAAAGG
TTAAAATTCTAAGCTAGGCTCAATTTATAAAAACGATCTTTAACTTTCGTTACTATTTTT
ATGTGCCCAGGCGTTCCATACGAAAACTTCCTTACACAAACTTAGAAGCTAAGAAAATGA
AGAATTCTCGAATGATTTTCTTTTGATCAGAAGAAGGAGTTTCTGGTAATTTATCAATAG
AATCTAACACACCGTAAGAGTCGAGTTTAGAAATGAGTTTTAACCTTTTTTGCATTTCGA
CTAATTGAGCAGAATCTTTGAGTTTCATTTGACCTTTTCCAGAAAGAACCCAAT
>NZ_CHER02000044 Leptospira kirschneri ctg7180000004937
TTTTTGATGCCTCGTTTTTTGCTGTAGGCTGGCTGTGATAGTCCGCTTCTCGCGAATTCT
TGAAATTTGTTTGCCCAGTCGATTCCTGTTTTTTTCATTCCTGTAGTATATACGTTTAAA
CATATATTGAAAAGATGTTGTTCGTTGGGCGGTTACGAAAATTTTAAGTTGTCTGAACGC
TTTTTCTTAACTAAATCTTAATATAACTTTTACTTTTTCAATTCATTGATGTTTCACTAT
TGATCGCGAATAGTATTCACAAAACCTAATGATTAATGAACTTTCTGTCTATTATAATAA
ACATCTATATTGATCAAAAAGTATTTTTTCCGCTTCTTGAAACCTATAAAAGTAATTATA
TTTCATTTCTCTTTTCAGGGAACCAAAGAAGGGCCTGGCGACTGCGTTGTCCTAAAATTT
TCCTTTCTGCTTTGCTCTTTCAAATTTTGTTGCTGAGCAAATATTTTCGAGTTTCGTTCG
AGTCATAATTGGATTCTCTGTTTGAATGAAAAACTAAATCTATAAGAGAATTTCTGCAAT
AATCGATTTGGAAAGAACAGTTGCTATTCACTTAACGACTGTTCTACGTAATAAAATGGG
CGAATCCAGTCTTTACAAACAAAGGCTGGACCGGGCTCTTTAGCTCTGGTCAAGTTATTG
TGAAATTCCAGAATCAGATTCAATTTTTATAAAATACCAATAACTTGACCCACAACGCGA
TTCATAGAGAGCGTTGTGCTGAGTTTCCAACGCGATTCATAGAGAGCCATAACCTTACCC
ACAAGTTGAATAGGATTTTAGAATCA
>NZ_CHER02000043 Leptospira kirschneri ctg7180000005003
GATATATATCCTAGTAGTTGACTAAAGACTGCTTCATCCAAATAACTTTTGTGTTCAAAT
AGAAGATAGACGTTTGCTTTTTTACCGGATTTCAGTGGGATCTGAAAGAGTAGATCGGTT
TGTTCTTCTTTTAAGTTTTCTGAAATAAAACTAGATTGTGTTAGTTCTAAACGGTTTAAC
TCTAAAAGTTCGATTACTTTTTCGGGTAAACTATTTTTAAAGAAGGAAATTGCATCCTCT
TTGTCCTGTAGAGTTTCCCGAATTAAACGATCATGTGGGTTTGTCATATCAGACATGGTA
TTTTTAATAATGGAGATTACTTCTATTTGTAAAGATTCATTTTCTTTTTTATGAATTAGT
TCTTTGATTCAATCCAGTGCGACTGCTTTTTTTAACTGTTTGGATTTGAGTGCTTTATTT
ACGTCTTCTTTGACTCCACTAAATACCTTGAAAACGAATGCCTACTTCATTTAAAAACAA
TCCTAAGTTTGTTGTGAGGAAATTCGAGGAAAAGTGAGGGAAGAATACGGGATTCTCAAT
CCAGCTAAAACTTGTAATCTGGCGTAATCAAGTTTAGACAAATCCGAGCAACGGCCTAAA
AAAAAGTAGGACAAAACTATGTTTATAGACTAGTAAAAAATCGATAGAATTTTCGATCAT
TTTTACCTTTGTAAATTACAGAAGTATTTTATATATCTTTAATATCTTATTTACATTTCG
TGAATGGGTCACAAGATACTGACAACGGCCTTCGTATTCAATACTGAGTGAGTAATCTGT
TCTCAACTTTATAGGTCATAGCATCCCGTGGTCTTTTAGATCCTTTTTACTCAAACCAGT
GATTTCTAAGATCGTATCCACATCCATACCTTTCTGAAGCATCTTACGAGCGGATTTTAA
CTTTTCTTTCTCTGCACCCTTTTCAATCCCTTTCTTGATACCCTTTTCAATACCCTTCTG
AATCCCTTGTAGTTCACCCGCTTCAAAACGAGCCGCCAAGTCATACGCATAGTCGCGGTC
TGATTTTAACTTCGCTTCTAATTCATTGCGCTTCTGAGGATCATTTGAATACTGTTCTAA
GATTGTAAATGCCTTACTTAAATCTGGTGTTTTATCTACTAAGATTCTCATTTCTTCTTC
CTCTAACTCGGACGTATGTTTTAACACATACAACCAGATCTCTAAATTATTCCTTAATTC
CCTTACGTCTCTTTTGACAAACTTACACAACTCTAAAAAATGAATTTCTACGTCGTCTGT
TAAGATGATGTCGGGATTAGACTCTTCTCTAAATTTAAACTTACTATGAAAATTCTCCGA
AGGAATTAAGTCAAAGTCAACTATATTTATCTGATACACTGGCTTCAAATCGGAATACAT
AGAACCCCGATTCAACTGGTCCCGAATTAGTCCTGAAAGATAATACAAACTTCTCTTCAC
GAAAGAACTTTGGTGAGCTACTTGGATTTCTACATGAAATATTTTTCCATCCTCATCTTG
AGCACGTATATCTAAATAAGAACGTTTGTCATTCGGAGAAGAGCCTACAAGTTCCGGATT
GAGTATCTTAATGTTTCGGATTGTATGTTCCCCATCCGGAAATAACACACTGTTTAATAT
TGAAATCAGTAAATCTGGTTCTTTAACAAACAAGATCTTAAACATCAAATCATTGGTTAA
TGGAAAAAAGTTTTTAGACATCGGTTTGGTTCTTTTGTTTTACTCTTAACTGGAAAGATA
TTTGAAGAAACTACTTTTTTTAGTTCGGTTTTTTATCTTTTCCCTTACAAATTTATCTTT
GTAAGATTTCTGTTTTTTTAGCTTTGTTTCAAATCTTAAAAAAGAAAGGAATCTTTTACA
AAAAATCTATGGATCTAATATTCCATTGAATATAGCTAAATTTGAAATCCCGAATTCTTC
CCTCCATTTTCCTCCAATTTCCTCTTTTACAATTTTACCTGCTCTTCAAACTATTAAGAC
CACAACAAAACAAACTACTATCTTTTGATTTAAAGAGTTTTGGTTTTTACAAAACAAGGA
CTTTATTGAAGTGAATGTTCCTAAAGGAAACAATTCGGTTTTGACTGTCTTTTATCACGG
AAATTATTTATTTCATTTTAACATGCCCTACCCTACCAACATCGAACAACCTACTTACTC
TTGAAAGAGCGTCGAAAATATTTCAACTTAGCTTCTAACTCTTTGTGTTTCTGGGAATCA
TTTGAATATTGTTTTAAGATTATAAATGTTTTACTTAAATCTAAAATTTGATCCCAGAGA
TTCCACTTTCTCTTTTCAAGATCCAAAACAAAGAAAATTCACTTCCAAACCTCAAATTTT
CAGGATTTTAGGGGTCGAAATTTGACCTGAAATTTCCTTAAATTTCCTGAAATCGAATTT
CTTTAAAAAATGGATTCAAAGCTATAGAAAGAACATGCTACTTTTTGAATATTCTTA
>NZ_CHER02000039 Leptospira kirschneri ctg7180000004997
TATTAAATCTGTGGGAATTACGACAAATCCTCTGTAAAACTGAGTTCCCACCCCACAACG
CGATCCGTAGAGAGCGTTGTGTTGAGTTTTCCCTATTTTGGGTGGGGGTAACTCAATGAA
TTGCTCCCTATGGGTCGCAATTCAGGTGGAGAAGTTCAGAAGACTTTTCTTTATCAGAAA
AACATACTTTTTGCAAGTAAAAAGACTCATTCTTGTCGGAACACTTGAAAAATGTGCGTT
TTTGAGCCTTCTGATTCTAAAATCCTATTCAACTTGTGGGTAAGGTTATGACTCCCCATG
GGGCGCTCTGGAAACTCAGCGTCTCACTCCCCATGGGTCGTTCTGGAAACTCAGCGTCTC
ACTCCCCATGGGTCGTTCTGGAAACTCAGCGTCTCACTCCCCATGGGTCGTTCGACAGGT
CGCGTTAACTCAGCAAAACGCTTTTTATTAAAGCGTTTTAGGGTCAATAAATTGAATCCA
AAGACGATTGTTGTATTATGTTTCCTGTATGCAATTTATTGACCAGAGCTAAAGAGCCCG
GTCCCGCCTGTTCCGTTTAATTTTTCTTTTACAAACCATTGGCGGGATTCGCCCAAATTT
TCAACTGTCGAATTTATCTTAATATAAAATTTATAGTTTAAACCAATTTATTTTACGTCT
GTAAACTTT
>NZ_CHER02000038 Leptospira kirschneri ctg7180000004954
TTTAACGTGAGTGAGCGCGAAAGGGATGGAATGCGAGGGAACTTTAGTAGAACGTTCTCT
CAAACTAAGGCCGCCTCGTTCCCTGAACTAAAGCAAAACGCTTTTTACGAAAGCGTTAAC
TCAGCAAAACGCTCTCTACCATAACCAACCCCACAAGTTGAATAGGATTTTAGAATCAGA
AGGCTCAAAAACGCACATTTTTCAAGTGTTCCGACAAGAATGAGTCTTTTTACTTGCAAA
AAGTATGTTTTTCTGATAAAGAAAAGTCTTCTGAACTTCTCCACCTGCAGAGCGACCCAT
GGGACAATGCTGTCAATTTAAGAAAAAAGAAAAAAGACAAAAGAATTTAGTACGACAAGA
AGACATGGGCAAGAAAGAATAACAGTCATAGTCGAATTAGAAGCTTGGATTCATACCAGA
AAGATTCTGGAAATCGCGCGAATGAAACCGAGCGCTTTTACTCGGAATCGTCAACTAACC
CGCTGATAGCCATGATAAACTTATTAAACAAAAGTTTAGCGGTCAGTTATATAGATATTT
TAAGAATTTAGGAAAGAAAGCCGTAACGAAACAAGCGTTTTCCTTAGCGCGGGAG
>NZ_CHER02000035 Leptospira kirschneri ctg7180000005008
CGACAAAGGAATTCAATCTGTTTTAGTCGGAGGAGCCGTAGTTTCAATTTATTCAAGAGG
AGCCTACCGTTCCGGAGATATAGATTTAGTAGAACCTTTTCTATTTGACTATATCGAAAG
ATATTACAATAGAAGGAGAAGACACTCGGCTTTAGGCTATCTGAGCCCAGTCGAGTTTGG
ACAGAAAATGATTGCATAGCTGTGTCCGTTTTTTCGGGGGAAGTTCATTACATAAAACTT
ATCAATGCCGCACATTACAGGTTCCATTCCTGTACATATTCAAAAGTACTATCCTTATTA
AACTGAATATATTTTCCCGTATCATTTTTCCATTCACTTGTAGCAATTAATAAGTGGTTT
AGATCACGATCTAAACTAGGGAACGCCATGTTAGAAATATTAACATTATTTGAGTTCGAA
CAGAACGAACAATGTATTACAATCGATATTAGAAATAGTATTTTATTTTTTGTCATAATT
TCCCTTAAAATATGATATAAATTCCTTTCGTCCAGCGAAGCAAGGTGACACAGCTTGCAA
CATAAAATTCAGTTCTCAAAAGTATATTTTTCATACCAATAACTATACTCTGGATATTTT
TTACATGAAGATTCGACAAGTAAATCTGCGTGAATTTCATCCAACGCATTAGAGACAATA
AATTCCTTATCGTTTCCATTTTTCATTTTAATTTGCCAAACAGTCCTATCTACAAAATGT
GGATTCATCCATTCAATAATGGATAAATCATATTGAAGTAACTTTACAAATTCATGAAGT
GCTTTTTTAGGTCTCAAATTATCTGCTTGTAACTTAACTACAATTTTATTCGGTGATTTA
TCCTGATAATTTTGATAAGCATGTAAATAATAGATAATACCATTTTCTAATTCTATAATT
GCGTATTTGAATGTGTCTAAATCATCATGGTCTGTTTTTATTATAATTCCTCTTTGCTCT
TCTAAGTCTTCCCAAGTTATTGATAATACTCCTATCTCAATTGGCTCTTGTTGCCAAGTA
AAGAAATCAGCAAATTCTAATTGTTTCATTTTTTAACTTAGCCCGAAGGCTGTGAGTGAC
GGATGGGACGAAAGCCGAAGTTATATGCCATTTTATACATTGCCCTGTTTTTTCAAAAAT
ATAGGTATAGAAATTTTAATTATTACTGCTAAAATTAAAATAGAGACTGTGAAAGAAGCT
AAAATATAATATATATTTTCAGGAGTTGCATTTCTTTCTAATACTAATAGATTTTTAATA
TTTATCTCTGGATAATTTGCTTTTATATAGTTTTTGGTTTCTTTATCAAGCATTTCGCCA
TTCTTCGAAGCAAGTCCGGAAGTCCTCTCAGAATAGATATAAGAATTTCCATTGCTAATA
TCTTTATATTTAGATACCTCAATCAACTGTATTCGATTGAGCATACCTTGTTCAGAACTT
TCATGCTGAGAAACTATTGGATAATAAACTTTTGTGTGTTCTGGTATTTCAGTATCGTTT
TCTGCATGAAAATAAAATGCCTTACTATATTCTTTTTTATGTGGACCAAGTGATATATAA
AATCTGTCGGGATATTCACCTTTAGACAGAGTATCGAAAGCTACTTCAATCGGCTCTTTC
TCAGAATAAAGATAATATACTAATTGAGTAATGGATATATTAATTACTAATAATGGAATT
AGACTGAACAAAATAAGGAACGGCTTTTTTAACTTTTTCCAATAAATAATTATTCCGAAA
ATAAGACCAAACCCTAGGAATAATGAGAGCAATCCCCATCCCCAGTGAATTCGAAAGGAT
TCGAAAATTAACCAAATATAGCCGAAGAAAAAAATTGTTACTGCCAATCCAATGAAAAGA
ATATCGAATATTTCAATCGCTACTAAAACTTTTTGAATCATTAATAATTACCAACTTTAA
TTTATTTGTTCAATGATTTCCAAATGAATACGACAAAACCCCATAAAATGGAGCCTAACG
AAATAATAAGTTCTCAACATTGCGAGCCCGAGTGTTTGTACGCGAAGTCACAAAGCAAAT
GTGTCAAAGACCGTAGTGAGGATCTGAAGTTATGCGACATTTCATACATTATTTAATACG
CTTTCAAATATTTTTTTGTCTCTATCGTTAAATCGTTGATTGATGTTGGATAAAAGCCTT
CCTCACATCTAGGTAAGCCATTATTAATTTATGATGCCTAAATCCGATACCATCCACTTC
AAATTCTTCTCCGTAATATGACCTAAACAAGGCTGCTAAGTTCGATTTAGTGAAAGTTAG
TTCGCCATCATAAAGTAGTCACATAAAAGTGGACAGCCATTTAAGCAATATTTCTCTCAA
ATTCTTCAGGGCTCATATAACCTAATGTAGAATGAAGCCTGAATCTATTGTAATACACTT
CGATAAAATCGAATAGAAAGCGCTCCGCTTCTTCAATGTTATAGAATGTATTGAATTCGA
TTTCTCTTTTTAGAGAACTAAAGAAAGACTCTGCCACCGCATTGTCCCAACAATTTCCTT
TTCTGCTGTTGCTTCGTCTGATACCGTTGGCAATTAGTAGCCTACGTGTTTCTTTAGAAC
AGAAATTAGAACCCCGATCCGAATGAAAGATCAATCCTTTCCGAGGGTTTCTTGACAACA
CTGCTTTTAATACCGTATCACATACCAACTGAGAATCATTACGATCGGAAAGCGACCAAC
AACCCATTGTCTTGCGTGAATACAAATCCAGAATCACACAAAGATAACTCCAACCAAACG
AGGTCCGAATGAATGTAACATCAGACACCCAAATTCGGTTCTGCTCGTTCGGATGAAATT
TCCTTTGAACTAAATCAGGAGCAATTCTACCTCCGTGTTTTGAATTCGTTGTCAAAGGTC
TAAACTGCTTCCTCTGTTTCCCGCTAATTTTACAGTGTTTCATCGCTTTTCGAACTTTCC
TCGCTCCATAGGGAAGATTCGACTTTTTTCAC
>NZ_CHER02000021 Leptospira kirschneri ctg7180000004946
GTTACTAAGTATTTTAGAGAAGAAGGAAAACTTAAAACAGAAGTAAAATTTGTAAAAGAA
GAAACGCAAGAGAACAAAAAGAATTTTAACTCAAGTAAGAAATTAGATCCAAAAAGTAAT
CAGGATAATCAAACACATATAACCCAACCGAATCAAGAATTATCCATGCCGGTTAATCAA
GTTGATCACTTAGAGAACCAGAACTTCAATTATTTCCGAGACTATATATCGGTTGATAAA
GTAATTCATGAGTTCATGAACCATTCTTCTCTGAAACTAAATCGACCTGACTTAGAAGAG
ATATGTAAACTAAGAATCAGTTACGATTTAGAGAAATTGTAATATACGACCCACTTCCAG
AAAGACTAAAAAATCACATACGAGATTATTTCTATAGTCTTCCCCAAAGGGTAATTGCAC
TACAATTTGAGGAAAACAAATTCAACGTTGCTGCATAATACAAAACCAAAAAGGGCGGCG
ACTTGTCTTGAAAATTAAAATGAGGCCCTTAATTTAACGTGAATTTGATATAAGGGATCA
GGTTGATTTTTCTAAAAAAGTTGTGATTTCGATTCCTAAAATGTAGGAACTCCTGCAAAC
CACGATTGTACGAACAAATTCTAAAATTGCAGGAACTGATATTTTTAGAAAATTCTTTCC
CATTTTCTTAGGTCGAACTCACGTTATTTTATGATTCTGAGTAGACTATATTCGTAATCC
TTAATGTTTCGAACTTAAACTTACACTCTTCAGAGTCCCACTCCCTGAATGCCTCTCTAA
GGATCGGCATTGGGAGTTTACGGGTTATTTGACTATTACACTCTGTAAGTTTTCAAATTT
AACTTAGGATTCAAATTTCCTCGGAAACGTTCTTCTTCCTTTTATTTCCTTTAGTTTCAT
TGTGAGGGATCAGAATTTTTCTAGCAATTTCCCAGGTTTGAATTTGACCGCTGCTACTTG
AAATTTGGCCGGGAGTAGAAGTATTTCCCGCTCTGGTTCCAGGCATATACTGTACAGAAG
TTACAATACCGGAATCGGCTAGTATGATAACGTCGGCTCCTTGTTCTCTTGCTTTTTCTT
TAACGTATTCGATACAATGATTCAGTTGTCCACAACGAACTTCTACAATACCAATCTGTT
CTACTTGATAATCCGGGACCGCTCTCATAATTACATCAATAGGTTCTGTTTCTGCAAGAG
GCGGATAACTTCTTCCGGTAATCGTAAGACTTCCCATGGCACAATTTGTTAAACCGAATA
CGATCAAACAAAATATAATAAACACTTTTCCAAACTTAAGACAGTAAGTTGTCATTTAAA
AGTTAAATCTCCTTTATGAGTTTGGATCGTTTTTTAAAAAGCTGTTATAGGTCAAATCAA
TTTTATAATTTAATTGCAAAATTAGGAATATAGTTTTTTTCATTTTTGTTTTTTAGAAAT
TTTAACTGAACATGAGTTTGAAATAAGAACCCATGGTTCTGAAAAAAATGAAATCTTAAA
CATTATGGATCGATTTCTAAAATGTAGAAACTCCCGCAAACCACGATTTTACGAACAACT
AGTGATACTTAAAAAATACCGCAAATTCGGGATTTACGGCATTTTAAAGCAAGAGCAAAA
TATTCAAATTTTTGAAACAATCTAACACAAGTATTCTATTCATGCGTCCGGGTAGTAATA
CAAAATTAAAAGGGTAGGGCGTTGGAATATGTTAGTCAAATGATGTTATCATCTTTCAGT
TCGCTCAATCTATCTAAGTGAAAACAAAATTCAAGAAAACG
>NZ_CHER02000020 Leptospira kirschneri ctg7180000004970
AGAACCGAAGAACAATGTTTTTCTAACGTTGAGATTTTGTATCCGAGTAAGTTCTTTGGC
CTTGAGTTTATCGAATCCGAAAACGTGATCTCTTCGGTTAACAATGTTTATCTGAACGGG
GTTCGTATTGCTGCGTTAAACGAGGCGGGCGCTCTTGCGTATTATCTAACCGATCAAGTG
GATTCCGTCTCAACTGTGTTAGACGATGAGGGGAACACTCTTTCTTTGATGCAGTATCTT
CCTTATGGTGATACGTTTGTGCAACGGGGGGACACAAACTTTTCTCCTAAGTTTAATTCG
CAAGAATTAGACAGAGAGTCTGGGTTTTATTTTTTCAATGCAAGGTTTTATGATCCTGGG
ATTGCGAGGTTTACCAGTGCGGATACGATCATTGACGGGGAATTGGATACCCAGGGTTGG
AATCGTTTCTCGTATGTGAAGGGGAATCCGATTGGGGCGAAAGATCCTACGGGGCACTAC
TCAGCCGAAAAATTTACTTCGAAACCAATTGAAGCAGCTGCGAGTAAATCAGGACCACAA
ATTACAGGAAAAGCTACTGGAATACTGGGAAGAGCCGTCGGTATTTTAGGACTTTTATTT
GCAACCAGTGATTTAGATGCTCCAGGAAAGGATTATCCATCAAAAGGAACCCCTCCACGA
AATACTTCTGTTACACCTGAAGACGCTAAAAAAATGCGTAAACAAGGTTTAGATCCTCTT
AATGAAAAAGATATTAATGGTTCTAAAAGTAGTGGTGTTAGTAATAAAGGGAATAATACC
GGGAATGGTTCCGGTAAATCAGCCAGCCAAAATAGTATTAATACTGATAAACGCTTTAGT
AAAGAAAAACAAGCTTTAGTGGAAATGGCAAAAAAAGATAAAGAAAAAGGAATTACTAAA
GACGACATGAAAGCTTATAAAGATTTAAATAAAGAATTGTCTGATCCTTTCCCAACCAAT
AAAGTTCGTGGACCAGAAAAACATGAAGGTCGAAATTATAAGGGTCTCCACGGACATGTA
GGACCTGTTGACCATATACCTGTAAAAGATCATTAAAGAGTATTTCATTGTACACGAAAC
TACAAAAAATTTGGAAAGATGCTGCTGAAAATTTGAATCTTGAAGTTGAAATTCCATTTT
CGATTATTCTAGCAGATAATTTAAAAATAAACGTATCAGTTCTTTTAAAAAATTTTGGTG
CCAAAAATGGAATGTTAATTATAACGAATTATGAAGACGTCGAACCATACTTAGAAAAAA
TTTATGAAGCTGGTTATGGATTTTCAACATTAAGCGAACCTTCTGAAAATGAGCAATATT
CAAGAAAGGATTTTATTGAATTATTATCTGATTGGGGTTGGACTGGTGATGTCAATTTAA
AACCGGAATGGCTTTAAAAGGAAAGAATATTTCTGGAGGAGTAAGGTATCCTACTTCGAA
TGAACTGCCGAATAATCCGAGGTTTCAAAAATGAAACGAGAAGATATATTCGACTGGCTC
ATTCAATGGTATTCCGATCAATGCGATGGACAATGGGAATTAGAAAACCAAATCAATATA
TATACCGTTAGTAATCCAGGCTGGACATTCAAAGTCGGTTTAAAATCCACAAAATTAGAA
AATCATGAAATGCGTTCTGGTTTAATTGAAACGGAAGAAACAGATTGGTATCTCTATTAT
ATCAAAGACTCAGTTTACGATGCAGGTGGAGATACCCTTAAACTTCCGATTTTAATTGAT
ATATTTCGATCCATCTGGGAGAGCAAAGAAATTGCTCATTCCTCTCATCAATCCAATACT
ATGTTTAGTTGGTTAATAGAATGGTATCAATCACAATGTGATGGAGATTGGGAACATGAA
TACGGAATCGCAATTAATACGAATGGCGATCGAGGCTGGCAGGTAAGGATCGAGGCTAAT
TTCACTGAGTTAGACGGCGTTGAAGTAGCTCATACTTTAAATCAGAAAGGAGAAGACGAC
TGGTATTCTTTTTCACTGAAAGATGGAAAATTCTTGGCAGAAGGAGATTCAAAGAAGTTA
CCAATTATCTTGGAGAAATTTAAGGAGATTTGGACGACAAATGCTGAGCCTCGCGAAGAT
TAAAATGGGATCTGACGAGAACAACAGTGAAACGTAGACCCAGGAAGCGGAGGAAACTCA
GCGCCGCACTTTTGTGCGGCAGGGATGGAGGCGGAGTCAATAAATTGGGACTGAAGATAA
TATTTTGGTTAACGTTCCTTTCTTTCAATTTATTGACTGGAGCCGAGAGCCCGGTTTCGG
AGAAACAAGAGCGAATCAATAATGTTGAATACAATGAAACTTTAAAATACACAACGACCT
TTCTCCGAAAGCCGCCCTTCTGTCCTCTGTCTAGAATTTGCGAAGCAAATTCGTCTGTCT
TCAGTCCTCTGAACGGGGTTCGTATTGCTGCGTTAAACGAGGCGGGCGCTCTTGCGTATT
ATCTAACCGATCAAGTGGATTCCGTCTCTACCGTGTTAGATGATGAGGGGAACACTCTTT
CTTTGATGCAGTATCTTCCTTATGGGGAAACGTTTGTGCAACGGGGGGATTTGAACTTTT
CTCCTAAGTTTAATTCGCAGGAGTTAGACAGAGAGTCTGGGTTTTATTTTTTCAACGCAA
GATTTTATGATCCGGGGATTGCTCGTTTCACCAGTGCGGATACTTTAATTGACGGGGAAT
TGGATACCCAGGGTTGGAACCGTTTCTCGTATGTGAAGGGGAATCCGATTGGGGCGAAAG
ATCCGACTGGGCATGATACTTTCTTATACTTTTACAAATCGGAAACAACAGATTCAGGAG
CGGGTCACGTTGCAGTTGGGGTTGGTAATACTAAGAAACAAACCTTATATGAAGCAAATC
CAGAAAATTCTAATCCGATTAGTCCAATGGAAAAGACTTACAAACATGAAGGCTCAATGG
ATGAAGTACTGAAGAAAAATCATATTGGATCAAAAGGAAAGAATCCTGATCTGATTTTGC
AATTGAAAACAGATTCAAAAGGCGCTGAGGATGGAAAAATAAAAGAGACTGCTGAAAAGT
TTTTCGAGAAAAATAAAAACTGGACAGTTTATAATGCCAATTGTACTGATTTAGCAAAAC
AAGGCACTGCACAGACAAAGTATAAAAGTGGAAAAGCGCCAATTTCCACACCTACGGACT
TCGCGAATGATCTTCATAAGAATAATCAAGAGGCAATCAAGTCAGGAGATATTAAAGTTT
TGAAAGGAGATTTTCAAAAATATAAAGATGGTACAGGGTCTGCGAATGGTGTCAGTAAAG
TTCTGGTTAACGATGCTAAAAAGGCAACTGCAAAAACAATAAATGACATTTTCAAATAAG
GTAAAATTGATAACGCTGGTAATAAAAACTATTACATTAGCAAATAGTGCTGGAATAATT
TATGCGGCAATCATTCTGTTTTTTCATTTTGCGATGATTTCAAATATTACTCATAAATTC
ACATCAGTATATTCAATTTTTATAATTTTATTTACATTTTTTGGAATCATTCTTTATTTG
CCGATATTAATTTGGTATTTAATACGAATTAAACTTTGGCAAATGTTTTTGCTAATTTTT
TTTAATATGTTTATACTCTTTACATTTCTTTACATAATCCAAAATAAATTTCTTGAAGAT
ATAGTTTTAGAAGAAATTGTTATACTTCTTAGTCTACTTATATCTATATTTTTAATTATC
TTCATAAGGCTGACCCTTACAAAGACTAAAACGTGTTCTCACTCAAACAACAATGAAACA
TAGACCTACAGCACGTTAGGGATGGATGCGTGGTCAAGTTATTGTAATAAAAATAGAATA
TATTATTTTTTAAAAATTCCTCAATAACTTGACCGAAGCGGAGAGCCCGGTCTGAGCGTA
AGCGAAGGAAACGCTTCAATATGACGCCAATGGTAACTTAACTCGTCAAAGGGACAATGT
TAAAGATCTTACCAAAC
>NZ_CHER02000018 Leptospira kirschneri ctg7180000004945
GCAGACGTAAACCGAATCCTAAGAATCGTATCGAACCTGAAAAAGAAGAAGCGGTAAAGA
AAATGGCGATCGACTTTCCCGCTTACGGTCAACAAAGAGCATCGAATGAATTAGAAAAAA
CAAAGGGATCATAGTCGCCCCTGCTACGGTAAGAAGTGTATGGGTTCGTCACGATTTGGA
GACCTTTCAAAAAAGACTGAAAGCATTAGAAGCGTTCATGGCCCAAGGCAATTCTCCCGT
ATTAACCGAATCGCAGGTGCAAGCATTAGAAAGAAGAAAATTAGAAAGGCAAGTTGAAGG
TGAAATAGAAACAGAACATCCTGGATACTTGGGATGCCAGGATACGTATTACGTAGGCAC
AATCAAAGGCGTAGGAAGAATTTACCAACAGACCTTTATCGACTCCTATTCTAAAGTGGC
AATGGCAAAACTTTACGATCGGAAGAACGCGTTAGTAGCTGCCGATATGTTAAACGACAA
AGAGGTTCCTTGGTTCGAAGAAGAAGGCGTTCGGTTGTTGAGGATCTTAACCGATAGAGG
AACCGAGTATTGTGGAAATAGAGAGCACCATGAGTTCCAACTCTTCCTTGCTTTGGAAGA
TATAGACCATTCGAAAACAAGAGCAAGACATCCTCAGTCCAATGGAATTTGTGAAAGATT
TCACAGAACCATTCAAGACGAATTCTATGCTATTGCTTTTAGGAAGAAGATATACAACTC
GATTGAAGATTTGCAGAAAGATTTGGATCAGTGGATTGATTCGTATAACTACGAACGAAC
ACATCAAGGCAAATATTGTTTTGGAAAAACTCCATTCCAGACTTTCCTTGACACGAAGGA
ATTAGCTAAGAATAAGTATCTCGACAACTTACAGTTTTCGTAATCAACTTTAAATGAGTG
TCAGATCTTATTTTGGCTATTACAAATGATTGGTATTGTTTTCCACAAAGCAAGCTTCCT
TGCCTTCGACCACCAAATACGCGCAGGCGACCTCTGGAAAAATGTAATCACAGTCGATCG
TGAACAAACCCGGAAAAGGTTCTTTTTCATAATGCGGCATGAGATTCTCCTCATTCTAAA
AGTCGAATTCTATCAAAGTCAAACGAACCGAAACGTTTTTTCAAAATCGTTTCGGTATTT
GTAGAAATAAATAACCTTCTGCAAATCTATAAAGCGGAAAAATCGAATCAAAAACTCAAT
CAATTCGATCAGTATATAGGAAAACACCGAGAGCGGCAACTTGAAATATTACAAGGAAGT
TCCGGAAATCCTCGATTTCAAGCAACCGAATTGTATATGTGAAGTTATACGCAGTTGCGC
CTGATTTCAGTTCGGTTCGATCGGATTCTCATAAAGAAGGATGCCGATACCGGATGACTG
TGCGTCAAGGAAGGCGCCCTTGACCTTTTCATCGTCCGTTGACAAAACCTGATCGGAAAT
TACCTTCGATTTCTGTACGATGAGTTCTCTCCAGCCGCGGAGAGAAAGTTCCTCACTTGC
ACGGAGGATTGCACGTTGCTCGTTGGATTCCGAGAGAAAGACCAAGAAGGCATGACGCGC
TCCGCGACCGAATTGAGGGTCGTCCCGGTCTGACTCGGCGGTGCATAAGAGGAGGTACAT
TTTCTTAAACGACTGCAGTTGAAATCACTCCACGGAAATGGAAAATGCTCTTCGGGCCCA
ATTGCCTATAACGAAGAGTCTCCTCGACGTTGTGTCCCGCGAACCGTAATGAGAGTCGCT
TGAACGATCTCGAACGGAACGAGGAGACGAAGTTGCTACATCAATAAACTTTTAATTTAA
TATTCTTGCTCATTAGTTTAAAATGCTTATCTAAGGTAAAAAGCATCGCTTTATTTTGAA
CTACATTCTGAGCAATTATTAAGTCGGGAACGCCAACTTTGTTTATCCCATTTTTAAGAT
TCGAGATTTGATATTCAATGATTTGTTCCCAATCGATTTCTAATGGGAATCGTTCTATTG
CTTCTAAGGAAGTAATTATCTTTGATTGCTTTCGTAATTTAAGGGATGGGACTAATTCCG
ACAAAATAAGATTGTTGGTATAGATATTTTCTGCATCAATTAACTCATCAACTTTTAGCG
AAATCGGCGAGTCAACATTCCTGAAATACTCGATCCAAACCGAGGAATCCAATAAAATGC
GACTCATCGTTTCCGTAAGTTATCTAAATTAATTCCGAGATTAATAGATCCTTTATATCT
CTTCAAATCTTTCAACTTTTCTCTTCTAATTAAAGAAGCAATTCCCTCTTTAATTACGTC
AGTTTTAGTCTTCAGATGAGTCAATCTCATCGCCTCTAAAAACAATTCTTCGGGAATATC
GACTGTTGTTCTCACAATATGCATAAAATATCAGATTTATATGCATTGTCAATTCTTCTT
TTTCGTATTGTTGTATGATTTTGATCGATAGCCAATCAATTATTACTCATTTGTTCTTTC
GAAAAAATGATTTTAACGTCAGACTGTGGATTTAAGCCATTACGCCTAACGAACTATGTT
TCTTGACGCTGCGGCCGCAAGCGCCTGTGCGCGAAGAGATGTAAACCCAACTTGAGTGAG
CATTAGCGAAAGTCACGCAAGTTGAGTTCAAAAGCAAATGTGCCGAAGGCCAAGCGAGGG
TTACGAAGCAATCCCGAAGCGACGCGAGGACGAAGTTAGGTAGTCGTCCCTGAAAAATTG
AGATTTTTGAGGAAATGAAAAGAAACAAGACTCAAATTGAAAATAAAAAGGATGAAGAAA
TAAGATTTTCGAAATAGCAAAAAAAAGCTCGAATGAGCTTAGAGAAATTAAACCCAGCAG
CGGATAAGATCGCATTGATACGATCCCCTTCTTTACCTTTGAGAAAATTTCGAACCATAT
TGTGATCTTGTTTCAGATGAGAAATAACCGGTTCAATGGCAGATCTTCTATTCATCCACA
TCCTTTCCCAACGAGTCATTTTCTTTCTGCTTTTATTGGAAAGATGAACTTGAACATCTT
CCGGATGATGATCCTTCCCTTTGTAACCCGTCGAACGACCTAAAACGCGATCCGTAGAGA
GCGTTTTGCTGAATTCAGGGAGCGAGACGCTTTAGTTTCAAGAATGGTTGAGCTCATAAA
GATCCTTCGAAAAACGTTTAGATCTGTTAAAAAAGGACATTTTTATGGGAACCCTTACTT
AAATTCAAACCGAGTCTTCGAAATTTTGAGACGTCCACATAAACCTCCTTAGGACGAAGA
CCAACAATCTTTTCCATCTGATTGATGGCATCCTTCAAAGTATGACCATCATACAGATTA
CTATGCAAGGCTTGAACTCCAACAATCCAATTAGATTTACTCGTGGTAACTAAACTCACT
TTACAACCAAACTCATATCTCTTATGAGATTTACCTTTAGAAATACATTCCACTTCCGGA
GCATGAATGCTATAGATTTTATTTTTGCTATTTTTACTTTGTGTTAAGATTCGTTCAGAG
ATTTCTAAAAGAGATTTAAGTCGTTCATTAGGATTTTCTACTTTTCTCTCTATATCCCGT
TTACACTGCCCAAATACGTTTTTAATCGTTTTGTTTCTTTATGTGCACGTTTACTTTGTT
TTGCATGAAAGTAACGTCCTTGTTTAATGAATGCTAATTTACTCTTGCGTTTACAGCGTA
TCTAAAAACTTAAACTTACTTTACAAAAAGATCAAGCTGCAAGGTTCTGCCCTACCGGTT
TTCTTACCGAAGAAACTGGTGAGGGCAGGTTCTAATGATACAGTTTTGCATCCGTTGGAA
AAGTGATCGCTTTTTCCTGAACCGTTGTATCAACATTCACTCTTCTAAATTCTGGATCTT
TGATCTGGCCTTCTCGTTGGCCTAATAAGATCGTCTCTTCTAAAAATTTCTCTACTCCAT
CGGAACCAATCCGTTTTCGCCACTTTACTAAACTCGTTGGATCACAAGGGAAATCATGTT
CGAAATATTCATTTCCGCAAACATATTGCCAATACGGATTTTCTAAATAACCTTCTACTA
CCTTTTCATCGGACACGTTATACGCGTGTTTCAAGTAATGAAGTCCAACTAACAAACGGA
TTCGTAATCCGGGTCGACCGGTTTTCTCTGTGTAGTATTTTCCGAATTCTTTCTCAAACT
TTTCCCAGTCTATCTTCTTCGCAATTTGATACAACGGGTGTCTAGGATCCAAGATCTGGT
CCAATCTATTTCGAAATAGTTCTCCTTGATTCTGTTGTTTTGAGTTTGCTTCTGGTTTCA
TTTTCACCGGCTTTTACGTGGTTTCTGGATCTTTTATGGGGATTTTGTTTTTAAGTTTTT
CTCCTTGGATAGCATTTTATTTGCGTTATTCGACATTTTAACTCTTTTTCAGGGACGACT
AAATACAATGATTTTTGAATGA
>NZ_CHER02000014 Leptospira kirschneri ctg7180000004962
AAATACTTTGTAGTTCAAGAAAAAGAAAAAACAAAAGTCATTTATATCTACGAATTTCGG
CACAATAGTGTACTATCTTTGAACCAGATTGCTTGGAGACGAAATATATCCGGTTCAAAA
AAGATTTGGATCTTTATGGAGTTTTTCGTTTTGAATTCTTTTTGTAATGAGTAGAAAAAA
AGAGTCGTTTTTTTGGCCTTATATTGTTTCCGATATTTTACTTTTTTAAAAAACTCGGAA
GTGGGGTTTTACAGGGTTTTTCACATGCAAAACCCCTGTTTCATAAAAATCAAGATTACA
AGATCAGGATATACTTCTCTTATTTTCCGATATTTCATTTTTGTTCATCTGAGTTTCTTT
TCTTAGGAATCAGAATTAGTAGGATGTTGACTCGATTCGTTCTAAGGGAATATGTTTGTT
GTAGGAAGACAGTAAAATCTGACTTTTCTTAAGAATCTCTATCCAGGAAAAACGAGCCAA
AACAGGACAATTTGAGAAAAGTCATATTTTTTAAGAAAGTAGGTAATTTCTAAGAATATT
CAAAAAGTAGCATGTTCTTTCTATAACTTTGAATCCATTTTTTAAAGAAATTCGATTTAA
GGAAATTTCAGGTCAAATTTCGACCCCCTAAAATTCTGAAAATTTGAGGTTTGGAAGTGG
ATTTTCTTTGTTTTGGATCTTGAAAAGAGAAAAGGAATCTTTAGGATCAAATTTTAGATT
TAAGTAAAACATTGATATTCAAGTGATCCTCAGAAACACAAAGAGTAAGAAGCTAAGTTT
AAATATTTTCGAAGTTCTTTCAAAAGCAGGTAAAGGAACCAGTTTGTGTAAAAATCTTAT
CGATGAAAACTCAAAGTAACACGATTATCTAAACTGTTTTAGTCAATAGGAATTCAGATA
GGGTAGGGCATGTTAAAGTGAAATAAATAATTTCCGTGATATAAAGACATTCAAAACCAA
ATTGTTTCCTTTAGGAACATTCACCTCAATAAAAGTCCTTGTTTTATAAAAACCAAAACT
CTTTAAATCAAAAGATAGTAGTTTGTTTTGTTGTGGTCTTAATAGTTTGAAGAGCAGGTA
AAATTGTAAAAGAGGAAATTGGAGGAA
>NZ_CHER02000007 Leptospira kirschneri ctg7180000004961
ATTTGATTTGTCGAAAGTGGATCTAAACCGATTGGAAAGTATCACCCTAAGAGTGATTTT
AGGAGTGGTTCAAAAAATATGGGAAGGAGATGCTTCATTTTTAGGTTATTTAGGAGAAGT
ATTTGAACTCTTAACAGGTCTAAAAAACGAATCGAAAAGGGTTGGAATTTTCCAAAAACT
GTTTTTGTATATATTCAATGTAAGAGAACTTGAACCGACTGAAATTACAAGTTTACTCAG
TCATTCAAGGTATAATAGGGAATACGAGGATTTAGCCATGACAACAGCTGAGAAATTAAG
AAAAGAAGGTAAAGTTGAAGATGCCAAAAATATGCTATTAAATGGTGCCAGTTTAGAATT
TGTATTAAAGGTTACCGGATTTACAGAACAAGAATTGAAAGACTATGGAGTGATATAATC
TGTAAAGTTAAGAACAGATCGGACACTCCTCACTCAGTATTGAATACGAAAGGTTGTCAG
CAATCTTTTGACCCAATTCACGAATTGTAAAATAGAATATTAAAGATATATAAAATACTT
CTGCATTTAGGTATTTGTTTATAATGGTAAAAACGTTTGGGTATTATCGATTTTTTACTA
GTCTATAAACTATAGTTTCTGTCCTACTTTTTCAAGCCGTTACCAGATTTGTCTGAACTT
TATTATACCAAATCACAAATTTTATCTGGATTTAGAATCTTGTATTCTTCCCTCACTTTT
CCTCACCTAACAAACGTAAAGTTGTTTTTAAATGGAGTAGGGCATTTACTTTCAAGTAAG
TAGAAAGAAACTTTGTTCGTAAGCTATAATGATTTGGATTTTCAAGTTTCGAAATACTTT
GTAGTTCAAGAAAAAGAAAAAACAAAAGTCATTTATATCTACGAATTTCGGCACAATAGT
GTACTATCTTTGAACCAGATTGCTTGGAGACGAAATATATCCGGTTCAAAAAAGATTTGG
ATCTTTATGGAGTTTTTCGTTTTGAATTCTTTTTGTAATGAGTAGAAAAAAAGAGTCGTT
TTTTTGGCCTTATATTGTTTCCGATATTTTACTTTTTTAAAAAACTCGGAAGTGGGGTTT
TACAGGGTTTTTCACATGCAAAACCCCTGTTTCATAAAAATCAAGATTACAAGATCAGGT
TATACTTCTCTTATTTTCCGATATTTCATTTTTGTTCATCTGAGTTTCTTTTCTTAGGAA
TCAGAATTAGTAGGATGTTGACTCGATTCGTTTTAAGGGAATATGTTTGTTGTAGGAAGA
CAGTAAAATCTGACTTTTCTTAAGAATCTCTATCCAGGAAAAAACGAGCCAAAACAGGAC
AATTTGAAAAAAGTCATATTTTTTAAGAAAGTAGGTAATTTCTAAGAATATTCAAAAAGT
AGCATGTTCTTTCTATAGCTTTGAATCCATTTTTTAAAGAAATTCG
>NZ_CHER02000003 Leptospira kirschneri ctg7180000004998
GAACTCAGCAAAACGCTTTTTATTAAAGCGTTTTAGGGTCAATAAATTGAATCCAAAGAC
GATTGTTGTATTATGTTTCCTGTATGCAATTTATTGACCAGAGCTAAAGAGCCCGGCCGG
CTGCCTGCCTGTGGCAAGCCGGATTCGCCCCGGTTTTCTTATGTCGAACTCACGTTAAAT
TACTTATTGAATAGTTATTGCTTTCGTAATATGGATTCAGAGAAAGAAAATCTGAAAAAT
TATCTTGCATCTAACCCAGGCTTTTCAAGCCCAGAAGGCGCCATTTTATCTTAGTTTCTT
GCATGAGATTTGTTGACCAGAATTGAAGACCAGGTCGGTCGGCTGGATTTTCCTGCTCTG
AATTTGTGTTGAATGATTTTAAAGAATATTATTTTTATATAAATTATTAATATAACGTGA
GCAGGGCGTAAGGGAGAAAAAAGAGTAAAAATCTTGTACTAAAAAGCGCCAGATCGCATA
TTGAACCAAATTTTTAACAAGAAAAGGGTATAATATGGATCTGACAGATATTTTGCGCAA
TAGACGATTATTGTACACAACAAAAAATAAACTGGAACGGGAAAATACTTTCGTCCGGTG
GTTCGAAAAAGAAACCGTAAATTTCAACTCAGCCTGAGTGAAGTAGCAACAATCGTAGTT
TATTTCCATCTTTCTCATTATAGAGAATTTAAAAATTATTATTTGATAGAAATAAAAAGA
ATCTGAAATCCGAATTTCCAAAAGCTGTAAGTTACAATCGTTTTGTCGAACTGATGCCTA
ACGCGTTAACCGTCATCGCTTCGTTTCTATCAAATTCTTGTTTAGAAAAGTGTTCCGGAA
TATCGTTCATTGATTCCACGATTCTCAAAGTATGCGACAACAGAAGAATCCATTCTCATA
AGAACCTGTCCAAGCCCCAGTTTTTTCTGTAAGAAAAACTGAGGCTGGACAAGAACCTTG
CAGCTTGATTATTCTGATAATGTAAACTGGAGTTTTGGGACACGCTGTAAGGTATTTAAA
TACATTGCACAGCGAGGAAAATCAAGCACAGGCTGGTTTTACGGCTTTAAATTGCATTTA
ATCATAAATCGTAATAACT
>NZ_CHER02000001 Leptospira kirschneri ctg7180000004968
AATGAGCTTCAACAGTTTGTAACCCAAGAGACAAAATGGGGGGGAAGTATTACACTAACA
ACCACACATCAAATCGGATATGGAAGCGCGTTTGGAGTTCCGACCACAACCACGGATCCA
AATGGAAACAAAAGCTATTTTGAATATGACAATTTTGGAAGACTGATCCGAACGAGTTCC
GACACAGATGGTGGAACTCAAGTTCTTGCGACTTACGGCTATGACTCTGGTTTTCCACTG
AGTGCAAAGACAACGTTTGTGACGGGAACGGGAGATCCGGACTTTGTGTCCCGCACGTAT
ACAGACGGAATGGGTCGTAACATATATACGGTCAAATCCGCGTCTAACGGTAATTTTGCG
ATTACGGGAAGAGTTGTGTATGACGGAACCGGAAAAGTGGTACGAAAAGGACAAAGTAGC
TGGGCGAGCTCCGGAGAGATAGACCGGTTTGTATTACACTTAGAAGAAAAAAATCCGACT
TCTTTTGAATACGATCCGATTGGAAGAATCAAAAAAACGATTTTACCACTTGCGGTCGGC
GAAACTTCTCCTGTGGTCGTAACTACGGCCTACAACAGTGCGTTTGAAAC
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