netcdf-1.0.20/0000755000000000000000000000000015205072111007755 5ustar00netcdf-1.0.20/.travis.yml0000644000000000000000000000041115205072111012062 0ustar00language: cpp sudo: required dist: trusty before_install: - sudo apt-get -qq update - sudo apt-get install -y octave liboctave-dev libnetcdf-dev netcdf-bin script: cd ..; mv octave-netcdf netcdf; octave --eval 'pkg install netcdf; pkg load netcdf; test_netcdf' netcdf-1.0.20/COPYING0000644000000000000000000010451315205072111011014 0ustar00 GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for software and other kinds of works. The licenses for most software and other practical works are designed to take away your freedom to share and change the works. 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Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . Also add information on how to contact you by electronic and paper mail. If the program does terminal interaction, make it output a short notice like this when it starts in an interactive mode: Copyright (C) This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, your program's commands might be different; for a GUI interface, you would use an "about box". You should also get your employer (if you work as a programmer) or school, if any, to sign a "copyright disclaimer" for the program, if necessary. For more information on this, and how to apply and follow the GNU GPL, see . The GNU General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Lesser General Public License instead of this License. But first, please read . netcdf-1.0.20/DESCRIPTION0000644000000000000000000000076115205072111011467 0ustar00Name: netcdf Version: 1.0.20 Date: 2026-05-25 Author: Alexander Barth Maintainer: John Donoghue Title: netcdf Description: A NetCDF interface for Octave Depends: octave (>= 4.0.0) BuildRequires: netcdf-devel [Fedora] libnetcdf-dev [Debian], netcdf-bin [Debian] License: GPLv3+ Url: https://gnu-octave.github.io/octave-netcdf/ Repository: https://github.com/gnu-octave/octave-netcdf/ Tracker: https://github.com/gnu-octave/octave-netcdf/issues netcdf-1.0.20/INDEX0000644000000000000000000000246015205072111010551 0ustar00netcdf >> NetCDF interface High-level functions nccreate ncdisp ncinfo ncreadatt ncread ncwriteatt ncwrite ncwriteschema Low-level functions #! Library Functions netcdf.setDefaultFormat netcdf.inqLibVers netcdf.setChunkCache netcdf.getChunkCache #! File Operations netcdf.create netcdf.open netcdf.abort netcdf.sync netcdf.endDef netcdf.inq netcdf.inqFormat netcdf.inqUnlimDims netcdf.inqGrps netcdf.reDef netcdf.setFill netcdf.close #! Dimensions netcdf.defDim netcdf.renameDim netcdf.inqDim netcdf.inqDimID #! Groups netcdf.defGrp netcdf.inqGrpName netcdf.inqGrpNameFull netcdf.inqGrpParent netcdf.inqGrpFullNcid netcdf.inqNcid netcdf.inqVarIDs netcdf.inqDimIDs #! Variables netcdf.defVar netcdf.renameVar netcdf.defVarFill netcdf.inqVarFill netcdf.defVarDeflate netcdf.inqVarDeflate netcdf.defVarChunking netcdf.inqVarChunking netcdf.defVarFletcher32 netcdf.inqVarFletcher32 netcdf.putVar netcdf.getVar netcdf.inqVarID netcdf.inqVar #! Attributes netcdf.inqAttName netcdf.inqAttID netcdf.inqAtt netcdf.getAtt netcdf.putAtt netcdf.copyAtt netcdf.renameAtt netcdf.delAtt #! User-Defined Types netcdf.defVlen netcdf.inqUserType netcdf.inqVlen #! Utilities netcdf.getConstant netcdf.getConstantNames Test function test_netcdf netcdf-1.0.20/Makefile0000644000000000000000000002761015205072111011423 0ustar00## Copyright 2015-2016 Carnë Draug ## Copyright 2015-2016 Oliver Heimlich ## Copyright 2017 Julien Bect ## Copyright 2017 Olaf Till ## Copyright 2018-2023 John Donoghue ## ## Copying and distribution of this file, with or without modification, ## are permitted in any medium without royalty provided the copyright ## notice and this notice are preserved. This file is offered as-is, ## without any warranty. TOPDIR := $(shell pwd) ## Some basic tools (can be overriden using environment variables) SED ?= sed TAR ?= tar GREP ?= grep CUT ?= cut TR ?= tr TEXI2PDF ?= texi2pdf -q MAKEINFO ?= makeinfo MAKEINFO_HTML_OPTIONS := --no-headers --set-customization-variable 'COPIABLE_LINKS 0' --set-customization-variable 'COPIABLE_ANCHORS 0' --no-split # work out a possible help generator ifeq ($(strip $(QHELPGENERATOR)),) ifneq ($(shell qhelpgenerator-qt5 -v 2>/dev/null),) QHELPGENERATOR = qhelpgenerator-qt5 else ifneq ($(shell /usr/lib64/qt6/libexec/qhelpgenerator -v 2>/dev/null),) QHELPGENERATOR = /usr/lib64/qt6/libexec/qhelpgenerator else ifneq ($(shell qcollectiongenerator-qt5 -v 2>/dev/null),) QHELPGENERATOR = qcollectiongenerator-qt5 else ifneq ($(shell qcollectiongenerator -qt5 -v 2>/dev/null),) QHELPGENERATOR = qcollectiongenerator -qt5 #else ifneq ($(shell qhelpgenerator -qt5 -v 2>/dev/null),) # # qt4 version wont error on-qt5 but also wont work # QHELPGENERATOR = qhelpgenerator -qt5 else QHELPGENERATOR = true endif endif ## Note the use of ':=' (immediate set) and not just '=' (lazy set). ## http://stackoverflow.com/a/448939/1609556 package := $(shell $(GREP) "^Name: " DESCRIPTION | $(CUT) -f2 -d" " | \ $(TR) '[:upper:]' '[:lower:]') version := $(shell $(GREP) "^Version: " DESCRIPTION | $(CUT) -f2 -d" ") pkg_date := $(shell $(GREP) "^Date: " DESCRIPTION | $(CUT) -f2 -d" ") pkg_year := $(shell $(GREP) "^Date: " DESCRIPTION | $(CUT) -f2 -d" " | $(CUT) -f1 -d"-") ## These are the paths that will be created for the releases. target_dir := target release_dir := $(target_dir)/$(package)-$(version) release_tarball := $(target_dir)/$(package)-$(version).tar.gz html_dir := $(target_dir)/$(package)-html html_tarball := $(target_dir)/$(package)-html.tar.gz ## Using $(realpath ...) avoids problems with symlinks due to bug ## #50994 in Octaves scripts/pkg/private/install.m. But at least the ## release directory above is needed in the relative form, for 'git ## archive --format=tar --prefix=$(release_dir). real_target_dir := $(realpath .)/$(target_dir) installation_dir := $(real_target_dir)/.installation package_list := $(installation_dir)/.octave_packages install_stamp := $(installation_dir)/.install_stamp ## These can be set by environment variables which allow to easily ## test with different Octave versions. ifndef OCTAVE OCTAVE := octave endif OCTAVE := $(OCTAVE) --no-gui --silent --norc MKOCTFILE ?= mkoctfile ## Command used to set permissions before creating tarballs FIX_PERMISSIONS ?= chmod -R a+rX,u+w,go-w,ug-s GIT := git GIT_TIMESTAMP := $(firstword $(shell $(GIT) log -n1 --date=unix --format="%ad")) ## Detect which VCS is used vcs := $(if $(wildcard .hg),hg,$(if $(wildcard .git),git,unknown)) ifeq ($(vcs),hg) release_dir_dep := .hg/dirstate endif ifeq ($(vcs),git) release_dir_dep := .git/index endif TAR_REPRODUCIBLE_OPTIONS := --sort=name --mtime="@$(GIT_TIMESTAMP)" --owner=0 --group=0 --numeric-owner TAR_OPTIONS := --format=ustar $(TAR_REPRODUCIBLE_OPTIONS) ## .PHONY indicates targets that are not filenames ## (https://www.gnu.org/software/make/manual/html_node/Phony-Targets.html) .PHONY: help ## make will display the command before runnning them. Use @command ## to not display it (makes specially sense for echo). help: @echo "Targets:" @echo " dist - Create $(release_tarball) for release." @echo " html - Create $(html_tarball) for release." @echo " release - Create both of the above and show md5sums." @echo " install - Install the package in $(installation_dir), where it is not visible in a normal Octave session." @echo " check - Execute package tests." @echo " doctest - Test the help texts with the doctest package." @echo " run - Run Octave with the package installed in $(installation_dir) in the path." @echo " clean - Remove everything made with this Makefile." ## ## Recipes for release tarballs (package + html) ## .PHONY: release dist html clean-tarballs clean-unpacked-release ## To make a release, build the distribution and html tarballs. release: dist html md5sum $(release_tarball) $(html_tarball) @echo "Upload @ https://sourceforge.net/p/octave/package-releases/new/" @echo " and note the changeset the release corresponds to" ## dist and html targets are only PHONY/alias targets to the release ## and html tarballs. dist: $(release_tarball) html: $(html_tarball) ## An implicit rule with a recipe to build the tarballs correctly. %.tar.gz: % $(TAR) -cf - $(TAR_OPTIONS) -C "$(target_dir)/" "$(notdir $<)" | gzip -9n > "$@" clean-tarballs: @echo "## Cleaning release tarballs (package + html)..." -$(RM) $(release_tarball) $(html_tarball) @echo ## Create the unpacked package. ## ## Notes: ## * having ".hg/dirstate" (or ".git/index") as a prerequesite means it is ## only rebuilt if we are at a different commit. ## * the variable RM usually defaults to "rm -f" ## * having this recipe separate from the one that makes the tarball ## makes it easy to have packages in alternative formats (such as zip) ## * note that if a commands needs to be run in a specific directory, ## the command to "cd" needs to be on the same line. Each line restores ## the original working directory. $(release_dir): $(release_dir_dep) -$(RM) -r "$@" ifeq (${vcs},hg) hg archive --exclude ".hg*" --type files "$@" endif ifeq (${vcs},git) git archive --format=tar --prefix="$@/" HEAD | $(TAR) -x $(RM) "$@/.gitignore" endif ## Don't fall back to run the supposed necessary contents of ## 'bootstrap' here. Users are better off if they provide ## 'bootstrap'. Administrators, checking build reproducibility, can ## put in the missing 'bootstrap' file if they feel they know its ## necessary contents. ifneq (,$(wildcard src/autogen.sh)) cd "$@/src" && ./autogen.sh && $(RM) -r "autom4te.cache" endif ifneq (,$(wildcard doc)) $(MAKE) -C "$@" docs #cd "$@" && $(RM) -f doc/mkfuncdocs.py doc/mkqhcp.py endif cd "$@" && $(RM) -rf devel ## Uncomment this if your src/Makefile.in has these targets for ## pre-building something for the release (e.g. documentation). # cd "$@/src" && ./configure && $(MAKE) prebuild && \ # $(MAKE) distclean && $(RM) Makefile ## ${FIX_PERMISSIONS} "$@" run_in_place = $(OCTAVE) --eval ' pkg ("local_list", "$(package_list)"); ' \ --eval ' pkg ("load", "$(package)"); ' # html_options = --eval 'options = get_html_options ("octave-forge");' ## Uncomment this for package documentation. html_options = --eval 'options = get_html_options ("octave-forge");' #html_options = --eval 'options = get_html_options ("octave-forge");' \ # --eval 'options.package_doc = "$(package).texi";' ifneq (,$(wildcard doc)) html_options += \ --eval 'options.package_doc = "octave-$(package).texi";' \ --eval 'options.package_doc_options = [options.package_doc_options " --css-include=octave-$(package).css"];' endif $(html_dir): $(install_stamp) $(RM) -r "$@"; $(run_in_place) \ --eval ' pkg load generate_html; ' \ $(html_options) \ --eval ' generate_package_html ("$(package)", "$@", options); '; $(FIX_PERMISSIONS) "$@"; clean-unpacked-release: @echo "## Cleaning unpacked release tarballs (package + html)..." -$(RM) -r $(release_dir) $(html_dir) @echo ## ## Recipes for installing the package. ## .PHONY: install clean-install octave_install_commands = \ ' llist_path = pkg ("local_list"); \ mkdir ("$(installation_dir)"); \ load (llist_path); \ local_packages(cellfun (@ (x) strcmp ("$(package)", x.name), local_packages)) = []; \ save ("$(package_list)", "local_packages"); \ pkg ("local_list", "$(package_list)"); \ pkg ("prefix", "$(installation_dir)", "$(installation_dir)"); \ pkg ("install", "-local", "-verbose", "$(release_tarball)"); ' ## Install unconditionally. Maybe useful for testing installation with ## different versions of Octave. install: $(release_tarball) @echo "Installing package under $(installation_dir) ..." $(OCTAVE) --eval $(octave_install_commands) touch $(install_stamp) ## Install only if installation (under target/...) is not current. $(install_stamp): $(release_tarball) @echo "Installing package under $(installation_dir) ..." $(OCTAVE) --eval $(octave_install_commands) touch $(install_stamp) clean-install: @echo "## Cleaning installation under $(installation_dir) ..." -$(RM) -r $(installation_dir) @echo ## ## Recipes for testing purposes ## .PHONY: run doctest check ## Start an Octave session with the package directories on the path for ## interactice test of development sources. run: $(install_stamp) $(run_in_place) --persist ## Test example blocks in the documentation. Needs doctest package ## https://octave.sourceforge.io/doctest/index.html doctest: $(install_stamp) $(run_in_place) --eval 'pkg load doctest;' \ --eval "targets = '$(shell (cd inst && ls *.m) | $(CUT) -f2 -d@ | $(CUT) -f1 -d.)';" \ --eval "targets = strsplit (targets, ' '); doctest (targets);" ## Test package. octave_test_commands = \ ' pkgs = pkg("list", "$(package)"); \ dirs = {pkgs{1}.dir}; \ __run_test_suite__ (dirs, {}); ' ## the following works, too, but provides no overall summary output as ## __run_test_suite__ does: ## ## else cellfun (@runtests, horzcat (cellfun (@ (dir) ostrsplit (([~, dirs] = system (sprintf ("find %s -type d", dir))), "\n\r", true), dirs, "UniformOutput", false){:})); endif ' check: $(install_stamp) $(run_in_place) --eval $(octave_test_commands) ## ## Docs ## .PHONY: docs docs: doc/octave-$(package).pdf doc/octave-$(package).html doc/octave-$(package).qhc clean-docs: $(RM) -f doc/octave-$(package).info $(RM) -f doc/octave-$(package).pdf $(RM) -f doc/octave-$(package).html $(RM) -f doc/functions.texi $(RM) -f doc/version.texi $(RM) -f doc/octave-$(package).qhc doc/octave-$(package).qch doc/version.texi: $(release_dir_dep) @echo Generating $@ @echo "@c autogenerated from Makefile" > $@ @echo "@set VERSION $(version)" >> $@ @echo "@set PACKAGE $(package)" >> $@ @echo "@set DATE $(pkg_date)" >> $@ @echo "@set YEAR $(pkg_year)" >> $@ doc/octave-$(package).pdf: doc/octave-$(package).texi doc/functions.texi doc/version.texi cd doc && SOURCE_DATE_EPOCH=$(GIT_TIMESTAMP) $(TEXI2PDF) octave-$(package).texi # remove temp files cd doc && $(RM) -f octave-$(package).aux octave-$(package).cp octave-$(package).cps octave-$(package).fn octave-$(package).fns octave-$(package).log octave-$(package).toc doc/octave-$(package).html: doc/octave-$(package).texi doc/functions.texi doc/version.texi cd doc && SOURCE_DATE_EPOCH=$(GIT_TIMESTAMP) $(MAKEINFO) --html --css-ref=octave-$(package).css $(MAKEINFO_HTML_OPTIONS) --output=octave-${package}.html octave-$(package).texi doc/functions.texi: $(release_dir_dep) cd doc && ./mkfuncdocs.py --src-dir=../inst/ --src-dir=../src/ --allowscan ../INDEX | $(SED) 's/@seealso/@xseealso/g' > functions.texi doc/octave-$(package).qhc: doc/octave-$(package).html ifeq ($(QHELPGENERATOR),true) $(warning No QHELPGENERATOR ... skipping QT doc build) else cd doc && ./mkqhcp.py octave-$(package) && $(QHELPGENERATOR) octave-$(package).qhcp -o octave-$(package).qhc cd doc && $(RM) octave-$(package).qhcp octave-$(package).qhp endif ## ## CLEAN ## .PHONY: clean clean: clean-tarballs clean-unpacked-release clean-install clean-docs @echo "## Removing target directory (if empty)..." -test -e $(target_dir) && rmdir $(target_dir) @echo @echo "## Cleaning done" @echo netcdf-1.0.20/NEWS0000644000000000000000000001020515205072111010452 0ustar00Summary of important user-visible changes for netcdf 1.0.20: ------------------------------------------------------------------- ** Minor doc updates ** Octave 12+ compatibility updates Summary of important user-visible changes for netcdf 1.0.19: ------------------------------------------------------------------- ** Minor doc updates Summary of important user-visible changes for netcdf 1.0.18: ------------------------------------------------------------------- ** Minor bug fixes ** Minor doc updates Summary of important user-visible changes for netcdf 1.0.17: ------------------------------------------------------------------- ** Fix compiling Octave 9+ ** Add +netcdf package functions ** minor doc updates Summary of important user-visible changes for netcdf 1.0.16: ------------------------------------------------------------------- ** Fix compiling Octave 8+ ** minor doc updates Summary of important user-visible changes for netcdf 1.0.15: ------------------------------------------------------------------- ** Update license to use GPLv3+ ** Add NC_VLEN processing as a user type ** Add user manual ** add warning in getVar if try to read negative ** minor doc updates ** Update requirement of octave version to 4.0+ Summary of important user-visible changes for netcdf 1.0.14: ------------------------------------------------------------------- ** Add NC_STRING type as an octave type ** Minor bugfixes Summary of important user-visible changes for netcdf 1.0.13: ------------------------------------------------------------------- ** Update to depend on Octave 3.8+ ** Update for Octave 5 and newer Summary of important user-visible changes for netcdf 1.0.12: ------------------------------------------------------------------- ** Fix bug #51443: configure in dev octave 4.3.0+ Summary of important user-visible changes for netcdf 1.0.11: ------------------------------------------------------------------- ** Fix cleaning of files (thanks to Rafael Laboissiere) Summary of important user-visible changes for netcdf 1.0.10: ------------------------------------------------------------------- ** Fix bug #46060: building with the --enable-64 option Summary of important user-visible changes for netcdf 1.0.9: ------------------------------------------------------------------- ** Fix bug #47014: writing NaNs Summary of important user-visible changes for netcdf 1.0.8: ------------------------------------------------------------------- ** Fix bug #45190, #46747: netcdf(nccreate) to enable DeflateLevel in nccreate ** Fix bug #46798: using the right delete operator Summary of important user-visible changes for netcdf 1.0.7: ------------------------------------------------------------------- ** Apply patch from John Donoghue to allow cross-compilation (bug #44837) Summary of important user-visible changes for netcdf 1.0.6: ------------------------------------------------------------------- ** ncread: do not replace _FillValue by NaNs for characters ** ncdisp: fix for attributes value with %-sign Summary of important user-visible changes for netcdf 1.0.5: ------------------------------------------------------------------- ** Implement DeflateLevel in nccreate Summary of important user-visible changes for netcdf 1.0.4: ------------------------------------------------------------------- ** Work-around for problem in netcdf 4.1.3 for reading a unlimited variable of current size 0 Summary of important user-visible changes for netcdf 1.0.3: ------------------------------------------------------------------- ** remove NC_INDEPENDENT and NC_COLLECTIVE which are no longer defined in netcdf 4.3.1 Summary of important user-visible changes for netcdf 1.0.2: ------------------------------------------------------------------- ** Avoid obsolete isequalwithequalnans functions Summary of important user-visible changes for netcdf 1.0.1: ------------------------------------------------------------------- ** Fix bug preventing compilation on 32-bit platforms. Summary of important user-visible changes for netcdf 1.0.0: ------------------------------------------------------------------- ** Initial release netcdf-1.0.20/PKG_ADD0000644000000000000000000001231215205072111010770 0ustar00% File automatically generated by PKG_ADD.sh autoload ("netcdf_getConstant", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_getConstantNames", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqLibVers", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_setDefaultFormat", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_setChunkCache", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_getChunkCache", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_create", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_open", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_abort", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_sync", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_setFill", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inq", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqUnlimDims", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqFormat", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defDim", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_renameDim", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_renameVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defVarFill", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVarFill", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defVarDeflate", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVarDeflate", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defVarChunking", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVarChunking", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defVarFletcher32", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVarFletcher32", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_endDef", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_reDef", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_putVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_getVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_close", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqAttName", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqAttID", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_getAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_putAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_copyAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_renameAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_delAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVarID", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVarIDs", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqDim", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqDimID", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqDimIDs", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defGrp", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqGrps", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqGrpName", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqGrpNameFull", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqGrpParent", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqGrpFullNcid", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqNcid", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_defVlen", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqVlen", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); autoload ("netcdf_inqUserType", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct")); netcdf-1.0.20/PKG_DEL0000644000000000000000000001327115205072111011011 0ustar00% File automatically generated by PKG_ADD.sh autoload ("netcdf_getConstant", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_getConstantNames", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqLibVers", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_setDefaultFormat", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_setChunkCache", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_getChunkCache", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_create", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_open", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_abort", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_sync", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_setFill", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inq", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqUnlimDims", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqFormat", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defDim", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_renameDim", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_renameVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defVarFill", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVarFill", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defVarDeflate", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVarDeflate", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defVarChunking", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVarChunking", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defVarFletcher32", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVarFletcher32", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_endDef", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_reDef", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_putVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_getVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_close", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqAttName", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqAttID", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_getAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_putAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_copyAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_renameAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_delAtt", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVarID", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVarIDs", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVar", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqDim", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqDimID", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqDimIDs", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defGrp", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqGrps", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqGrpName", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqGrpNameFull", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqGrpParent", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqGrpFullNcid", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqNcid", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_defVlen", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqVlen", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); autoload ("netcdf_inqUserType", fullfile (fileparts (mfilename ("fullpath")), "__netcdf__.oct"),"remove"); netcdf-1.0.20/README.md0000644000000000000000000000236615205072111011243 0ustar00# Octave NetCDF A NetCDF interface for Octave ## Introduction The Octave NetCDF toolkit implements the MATLAB NetCDF interface for GNU Octave. ## Requirements * Octave 4.0+ * [Netcdf 4.1+](https://www.unidata.ucar.edu/software/netcdf) Your NetCDF library install needs to include nc-config and development headers ## Installing To install, run the octave package manager: 1. If running Windows, the package may already be installed: type pkg list, to view the installed packages. 2. To install from source forge/package index: `pkg install -forge netcdf` 3. To install from a local tarball. `pkg install netcdf-XXXXXXX.tar.gz` Where XXXXXXX is the version of the the downloaded tarball. ## Usage 1. Load the package. `pkg load netcdf` (Required each time Octave is started) 2. Use the high level function calls (nccreate, ncinfo etc) or use the low level functions in the netcdf namespace ## Documentation See the function list and documentation [online](https://gnu-octave.github.io/octave-netcdf/index) Documentation is also available using octave help. For example: `help nccreate` `help netcdf.open` ## Bugs and Issues Please report issues on the [tracker](https://github.com/gnu-octave/octave-netcdf/issues) netcdf-1.0.20/doc/0000755000000000000000000000000015205072111010522 5ustar00netcdf-1.0.20/doc/functions.texi0000644000000000000000000010767715205072111013447 0ustar00@c --------------------------------------------------- @node High-level functions @section High-level functions @cindex High-level functions @c High-level functions nccreate @c ----------------------------------------- @subsection nccreate @cindex nccreate @deftypefn {} {} nccreate(@var{filename},@var{varname}) @deftypefnx {} {} nccreate(@var{filename},@var{varname},"property",@var{value},...) Create the variable @var{varname} in the file @var{filename}. @subsubheading Properties The following properties can be used: @itemize @item "Dimensions": a cell array with the dimension names followed by their length or Inf if the dimension is unlimited. If the property is omitted, a scalar variable is created. @item "Datatype": a string with the Octave data type name (see @code{ncinfo} for the correspondence between Octave and NetCDF data types). The default data type is a "double". @item "Format": This can be "netcdf4_classic" (default), "classic", "64bit" or "netcdf4". @item "FillValue": the value used for undefined elements of the NetCDF variable. @item "ChunkSize": the size of the data chunks. If omitted, the variable is not chunked. @item "DeflateLevel": The deflate level for compression. It can be the string "disable" (default) for no compression or an integer between 0 (no compression) and 9 (maximum compression). @item "Shuffle": true for enabling the shuffle filter or false (default) for disabling it. @end itemize @subsubheading Example @example nccreate("test.nc","temp","Dimensions",@{"lon",10,"lat",20@},"Format","classic"); ncdisp("test.nc"); @end example @xseealso{ncwrite} @end deftypefn @c High-level functions ncdisp @c ----------------------------------------- @subsection ncdisp @cindex ncdisp @deftypefn {} {} ncdisp (@var{filename}) Display meta-data of the NetCDF file @var{filename} @subsubheading Example @example ncdisp("test.nc"); @end example @xseealso{ncinfo} @end deftypefn @c High-level functions ncinfo @c ----------------------------------------- @subsection ncinfo @cindex ncinfo @deftypefn {} {@var{info} =} ncinfo (@var{filename}) @deftypefnx {} {@var{info} =} ncinfo (@var{filename}, @var{varname}) @deftypefnx {} {@var{info} =} ncinfo (@var{filename}, @var{groupname}) Return information about an entire NetCDF file @var{filename} (i.e. the root group "/"), about the variable called @var{varname} or the group called @var{groupname}. The structure @var{info} has always the following fields: @itemize @item @var{Filename}: the name of the NetCDF file @item @var{Format}: one of the strings "CLASSIC", "64BIT", "NETCDF4" or "NETCDF4_CLASSIC" @end itemize The structure @var{info} has additional fields depending on whether a group of variable is queried. @subsubheading Groups Groups are returned as an array structure with the following fields: @itemize @item @var{Name}: the group name. The root group is named "/". @item @var{Dimensions}: a array structure with the dimensions. @item @var{Variables}: a array structure with the variables. @item @var{Attributes}: a array structure with global attributes. @item @var{Groups}: a array structure (one for each group) with the same fields as this structure. @end itemize @subsubheading Dimensions Dimensions are returned as an array structure with the following fields: @itemize @item @var{Name}: the name of the dimension @item @var{Length}: the length of the dimension @item @var{Unlimited}: true of the dimension has no fixed limited, false @end itemize @subsubheading Variables Variables are returned as an array structure with the following fields: @itemize @item @var{Name}: the name of the dimension @item @var{Dimensions}: array structure of all dimensions of this variable with the same structure as above. @item @var{Size}: array with the size of the variable @item @var{Datatype}: string with the corresponding octave data-type (see below) @item @var{Attributes}: a array structure of attributes @item @var{FillValue}: the NetCDF fill value of the variable. If the fill value is not defined, then this attribute is an empty array ([]). @item @var{DeflateLevel}: the NetCDF deflate level between 0 (no compression) and 9 (maximum compression). @item @var{Shuffle}: is true if the shuffle filter is activated to improve compression, otherwise false. @item @var{CheckSum}: is set to "fletcher32", if check-sums are used, otherwise this field is not defined. @end itemize @subsubheading Attributes Attributes are returned as an array structure with the following fields: @itemize @item @var{Name}: the name of the attribute @item @var{Value}: the value of the attribute (with the corresponding type) @item @var{Unlimited}: true of the dimension has no fixed limited, false @end itemize @subsubheading Data-types The following the the correspondence between the Octave and NetCDF data-types: @multitable @columnfractions .5 .5 @headitem Octave type @tab NetCDF type @item @code{int8} @tab @code{NC_BYTE} @item @code{uint8} @tab @code{NC_UBYTE} @item @code{int16} @tab @code{NC_SHORT} @item @code{uint16} @tab @code{NC_USHORT} @item @code{int32} @tab @code{NC_INT} @item @code{uint32} @tab @code{NC_UINT} @item @code{int64} @tab @code{NC_INT64} @item @code{uint64} @tab @code{NC_UINT64} @item @code{single} @tab @code{NC_FLOAT} @item @code{double} @tab @code{NC_DOUBLE} @item @code{char} @tab @code{NC_CHAR} @end multitable The output of @code{ncinfo} can be used to create a NetCDF file with the same meta-data using @code{ncwriteschema}. Note: If there are no attributes (or variable or groups), the corresponding field is an empty matrix and not an empty struct array for compatibility with matlab. @xseealso{ncread,nccreate,ncwriteschema,ncdisp} @end deftypefn @c High-level functions ncread @c ----------------------------------------- @subsection ncread @cindex ncread @deftypefn {} {@var{x} =} ncread (@var{filename}, @var{varname}) @deftypefnx {} {@var{x} =} ncread (@var{filename}, @var{varname},@var{start},@var{count},@var{stride}) Read the variable @var{varname} from the NetCDF file @var{filename}. If @var{start},@var{count} and @var{stride} are present, a subset of the variable is loaded. The parameter @var{start} contains the starting indices (1-based), @var{count} is the number of elements and @var{stride} the increment between two successive elements. These parameters are vectors whose length is equal to the number of dimension of the variable. Elements of @var{count} might be Inf which means that as many values as possible are loaded. If the variable has the _FillValue attribute, then the corresponding values are replaced by NaN (except for characters). NetCDF attributes scale_factor (default 1) and add_offset (default 0) are use the transform the variable during the loading: x = scale_factor * x_in_file + add_offset The output data type matches the NetCDF datatype, except when the attributes _FillValue, add_offset or scale_factor are defined in which case the output is a array in double precision. Note that values equal to the attribute missing_value are not replaced by NaN (for compatibility). @subsubheading Example Read the data from variable 'mydata' in the file test.nc. @example data = ncread('test.nc','mydata'); @end example @xseealso{ncwrite,ncinfo,ncdisp} @end deftypefn @c High-level functions ncreadatt @c ----------------------------------------- @subsection ncreadatt @cindex ncreadatt @deftypefn {} {@var{val} =} ncreadatt(@var{filename},@var{varname},@var{attname}) Return the attribute @var{attname} of the variable @var{varname} in the file @var{filename}. Global attributes can be accessed by using "/" or the group name as @var{varname}. The type of attribute is mapped to the Octave data types. (see @code{ncinfo}). @subsubheading Example Read global attribute 'creation_date' @example d = ncreadatt('test.nc','/','creation_date') @end example Read atribute 'myattr' assigned to variable mydata. @example d = ncreadattr('test.nc', 'mydata', 'myattr'); @end example @xseealso{ncinfo,ncwriteatt} @end deftypefn @c High-level functions ncwrite @c ----------------------------------------- @subsection ncwrite @cindex ncwrite @deftypefn {} {} ncwrite (@var{filename}, @var{varname}, @var{x}) @deftypefnx {} {} ncwrite (@var{filename}, @var{varname}, @var{x}, @var{start}, @var{stride}) Write array @var{x} to the the variable @var{varname} in the NetCDF file @var{filename}. The variable with the name @var{varname} and the appropriate dimension must already exist in the NetCDF file. If @var{start} and @var{stride} are present, a subset of the variable is written. The parameter @var{start} contains the starting indices (1-based) and @var{stride} the increment between two successive elements. These parameters are vectors whose length is equal to the number of dimension of the variable. If the variable has the _FillValue attribute, then the values equal to NaN are replaced by corresponding fill value NetCDF attributes scale_factor (default 1) and add_oddset (default 0) are use the transform the variable during writing: x_in_file = (x - add_offset)/scale_factor @subsubheading Example Create a netcdf file with a variable of 'mydata' and then write data to that variable. @example nccreate('myfile.nc','mydata'); ncwrite('myfile.nc','mydata', 101); @end example @xseealso{ncread,nccreate} @end deftypefn @c High-level functions ncwriteatt @c ----------------------------------------- @subsection ncwriteatt @cindex ncwriteatt @deftypefn {} {} ncwriteatt(@var{filename},@var{varname},@var{attname},@var{val}) Defines the attribute @var{attname} of the variable @var{varname} in the file @var{filename} with the value @var{val}. Global attributes can be defined by using "/" or the group name as @var{varname}. The type of value is mapped to the NetCDF data types. (see @code{ncinfo}). @subsubheading Example Create a netcdf4 format file with a variable mydata and assign an attribute "units" to it. @example nccreate("myfile.nc", "mydata", "Format", "netcdf4"); ncwriteatt("myfile.nc", "mydata", "Units", "K"); @end example @xseealso{ncinfo} @end deftypefn @c High-level functions ncwriteschema @c ----------------------------------------- @subsection ncwriteschema @cindex ncwriteschema @deftypefn {} {} ncwriteschema (@var{filename}, @var{schema}) Create a NetCDF called @var{filename} with the dimensions, attributes, variables and groups given by the structure @var{schema}. The variable @var{schema} has the same structure as the results of @code{ncinfo}. @code{ncinfo} and @code{ncwriteschema} can be used together to create a NetCDF using another file as a template: @subsubheading Example @example schema = ncinfo("template.nc"); # the new file should be named "new_file.nc" ncwriteschema("new_file.nc",schema); @end example Unused field in @var{schema} such as @var{ChunkSize}, @var{Shuffle}, @var{DeflateLevel}, @var{FillValue}, @var{Checksum} can be left-out if the corresponding feature is not used. Dimensions are considered as limited if the field @var{Unlimited} is missing, unless the dimension length is Inf. @xseealso{ncinfo} @end deftypefn @c --------------------------------------------------- @node Low-level functions @section Low-level functions @cindex Low-level functions @c --------------------------------------------------- @node Low-level functions - Library Functions @subsection Library Functions @cindex Low-level functions - Library Functions @c Low-level functionsLibrary Functions netcdf.getChunkCache @c ----------------------------------------- @subsubsection netcdf.getChunkCache @cindex getChunkCache @deftypefn {} {[@var{size}, @var{nelems}, @var{preemption}] =} netcdf.getChunkCache() Gets the default chunk cache settings in the HDF5 library. @end deftypefn @c Low-level functionsLibrary Functions netcdf.inqLibVers @c ----------------------------------------- @subsubsection netcdf.inqLibVers @cindex inqLibVers @deftypefn {} {@var{vers} =} netcdf.inqLibVers() Returns the version of the NetCDF library as a string. @end deftypefn @c Low-level functionsLibrary Functions netcdf.setChunkCache @c ----------------------------------------- @subsubsection netcdf.setChunkCache @cindex setChunkCache @deftypefn {} {} netcdf.setChunkCache(@var{size}, @var{nelems}, @var{preemption}) Sets the default chunk cache settings in the HDF5 library. The settings applies to all files which are subsequently opened or created. @end deftypefn @c Low-level functionsLibrary Functions netcdf.setDefaultFormat @c ----------------------------------------- @subsubsection netcdf.setDefaultFormat @cindex setDefaultFormat @deftypefn {} {@var{old_format} =} netcdf.setDefaultFormat(@var{format}) Sets the default format of the NetCDF library and returns the previous default format (as a numeric value). @var{format} can be "format_classic", "format_64bit", "format_netcdf4" or "format_netcdf4_classic". @end deftypefn @c --------------------------------------------------- @node Low-level functions - File Operations @subsection File Operations @cindex Low-level functions - File Operations @c Low-level functionsFile Operations netcdf.abort @c ----------------------------------------- @subsubsection netcdf.abort @cindex abort @deftypefn {} {} netcdf.abort(@var{ncid}) Aborts all changes since the last time the dataset entered in define mode. @end deftypefn @c Low-level functionsFile Operations netcdf.close @c ----------------------------------------- @subsubsection netcdf.close @cindex close @deftypefn {} {} netcdf.close(@var{ncid}) Close the NetCDF file with the id @var{ncid}. @end deftypefn @c Low-level functionsFile Operations netcdf.create @c ----------------------------------------- @subsubsection netcdf.create @cindex create @deftypefn {} {@var{ncid} =} netcdf.create(@var{filename},@var{mode}) Creates the file named @var{filename} in the mode @var{mode}. @var{mode} can have the following values: @table @asis @item "clobber" (overwrite existing files), @item "noclobber" (prevent to overwrite existing files) @item "64bit_offset" (use the 64bit-offset format), @item "netcdf4" (use the NetCDF4, i.e. HDF5 format) or @item "share" (concurrent reading of the dataset). @end table @var{mode} can also be the numeric value return by netcdf.getConstant. In the later-case it can be combined with a bitwise-or. @end deftypefn @subsubheading Example @example mode = bitor(netcdf.getConstant("classic_model"), ... netcdf.getConstant("netcdf4")); ncid = netcdf.create("test.nc",mode); @end example @xseealso {netcdf.open, netcdf.close} @c Low-level functionsFile Operations netcdf.endDef @c ----------------------------------------- @subsubsection netcdf.endDef @cindex endDef @deftypefn {} {} netcdf.endDef (@var{ncid}) Leaves define-mode of NetCDF file @var{ncid}. @end deftypefn @c Low-level functionsFile Operations netcdf.inq @c ----------------------------------------- @subsubsection netcdf.inq @cindex inq @deftypefn {} {[@var{ndims},@var{nvars},@var{ngatts},@var{unlimdimid}] =} netcdf.inq(@var{ncid}) Return informat about a netcdf file. Return the number of dimension (@var{ndims}), the number of variables (@var{nvars}), the number of global attributes (@var{ngatts}) and the id of the unlimited dimension (@var{unlimdimid}). If no unlimited dimension is declared -1 is returned. For NetCDF4 files, one should use the function netcdf.inqUnlimDims as multiple unlimited dimension exists. @end deftypefn @c Low-level functionsFile Operations netcdf.inqFormat @c ----------------------------------------- @subsubsection netcdf.inqFormat @cindex inqFormat @deftypefn {} {@var{format} =} netcdf.inqFormat(@var{ncid}) Return the NetCDF format of the dataset @var{ncid}. Format might be one of the following "FORMAT_CLASSIC", "FORMAT_64BIT", "FORMAT_NETCDF4" or "FORMAT_NETCDF4_CLASSIC" @end deftypefn @c Low-level functionsFile Operations netcdf.inqGrps @c ----------------------------------------- @subsubsection netcdf.inqGrps @cindex inqGrps @deftypefn {} {@var{ncids} =} netcdf.inqGrps(@var{ncid}) Return all groups ids in a NetCDF file. @xseealso{netcdf.inqGrps} @end deftypefn @c Low-level functionsFile Operations netcdf.inqUnlimDims @c ----------------------------------------- @subsubsection netcdf.inqUnlimDims @cindex inqUnlimDims @deftypefn {} {@var{unlimdimids} =} netcdf.inqUnlimDims(@var{ncid}) Return the id of all unlimited dimensions of the NetCDF file @var{ncid}. @end deftypefn @c Low-level functionsFile Operations netcdf.open @c ----------------------------------------- @subsubsection netcdf.open @cindex open @deftypefn {} {@var{ncid} =} netcdf.open(@var{filename},@var{mode}) Opens the file named @var{filename} in the mode @var{mode}. @xseealso{netcdf.create, netcdf.close} @end deftypefn @c Low-level functionsFile Operations netcdf.reDef @c ----------------------------------------- @subsubsection netcdf.reDef @cindex reDef @deftypefn {} {} netcdf.reDef (@var{ncid}) Enter define-mode of NetCDF file @var{ncid}. @end deftypefn @c Low-level functionsFile Operations netcdf.setFill @c ----------------------------------------- @subsubsection netcdf.setFill @cindex setFill @deftypefn {} {@var{old_mode} =} netcdf.setFill(@var{ncid},@var{fillmode}) Change the fill mode (@var{fillmode}) of the data set @var{ncid}. @var{fillmode} can be either "fill" or "nofill". The previous value of the fill mode is returned. @end deftypefn @c Low-level functionsFile Operations netcdf.sync @c ----------------------------------------- @subsubsection netcdf.sync @cindex sync @deftypefn {} {} netcdf.sync(@var{ncid}) Writes all changes to the disk and leaves the file open. @end deftypefn @c --------------------------------------------------- @node Low-level functions - Dimensions @subsection Dimensions @cindex Low-level functions - Dimensions @c Low-level functionsDimensions netcdf.defDim @c ----------------------------------------- @subsubsection netcdf.defDim @cindex defDim @deftypefn {} {@var{dimid} =} netcdf.defDim(@var{ncid},@var{name},@var{len}) Define the dimension with the name @var{name} and the length @var{len} in the dataset @var{ncid}. The id of the dimension is returned. @end deftypefn @c Low-level functionsDimensions netcdf.inqDim @c ----------------------------------------- @subsubsection netcdf.inqDim @cindex inqDim @deftypefn {} {[@var{name},@var{length}] =} netcdf.inqDim(@var{ncid},@var{dimid}) Returns the name and length of a NetCDF dimension. @xseealso{netcdf.inqDimID} @end deftypefn @c Low-level functionsDimensions netcdf.inqDimID @c ----------------------------------------- @subsubsection netcdf.inqDimID @cindex inqDimID @deftypefn {} {@var{dimid} =} netcdf.inqDimID(@var{ncid},@var{dimname}) Return the id of a NetCDF dimension. @xseealso{netcdf.inqDim} @end deftypefn @c Low-level functionsDimensions netcdf.renameDim @c ----------------------------------------- @subsubsection netcdf.renameDim @cindex renameDim @deftypefn {} {} netcdf.renameDim(@var{ncid},@var{dimid},@var{name}) Renames the dimension with the id @var{dimid} in the data set @var{ncid}. @var{name} is the new name of the dimension. @end deftypefn @c --------------------------------------------------- @node Low-level functions - Groups @subsection Groups @cindex Low-level functions - Groups @c Low-level functionsGroups netcdf.defGrp @c ----------------------------------------- @subsubsection netcdf.defGrp @cindex defGrp @deftypefn {} {@var{new_ncid} =} netcdf.defGrp(@var{ncid},@var{name}) Define a group in a NetCDF file. @xseealso{netcdf.inqGrps} @end deftypefn @c Low-level functionsGroups netcdf.inqDimIDs @c ----------------------------------------- @subsubsection netcdf.inqDimIDs @cindex inqDimIDs @deftypefn {} {@var{dimids} =} netcdf.inqDimID(@var{ncid}) @deftypefnx {} {@var{dimids} =} netcdf.inqDimID(@var{ncid},@var{include_parents}) Return the dimension ids defined in a NetCDF file. If @var{include_parents} is 1, the dimension ids of the parent group are also returned. Per default this is not the case (@var{include_parents} is 0). @xseealso{netcdf.inqDim} @end deftypefn @c Low-level functionsGroups netcdf.inqGrpFullNcid @c ----------------------------------------- @subsubsection netcdf.inqGrpFullNcid @cindex inqGrpFullNcid @deftypefn {} {@var{grp_ncid} =} netcdf.inqGrpFullNcid(@var{ncid},@var{name}) Return the group id based on the full group name. @xseealso{netcdf.inqGrpName} @end deftypefn @c Low-level functionsGroups netcdf.inqGrpName @c ----------------------------------------- @subsubsection netcdf.inqGrpName @cindex inqGrpName @deftypefn {} {@var{name} =} netcdf.inqGrpName(@var{ncid}) Return group name in a NetCDF file. @xseealso{netcdf.inqGrps} @end deftypefn @c Low-level functionsGroups netcdf.inqGrpNameFull @c ----------------------------------------- @subsubsection netcdf.inqGrpNameFull @cindex inqGrpNameFull @deftypefn {} {@var{name} =} netcdf.inqGrpNameFull(@var{ncid}) Return full name of group in NetCDF file. @xseealso{netcdf.inqGrpName} @end deftypefn @c Low-level functionsGroups netcdf.inqGrpParent @c ----------------------------------------- @subsubsection netcdf.inqGrpParent @cindex inqGrpParent @deftypefn {} {@var{parent_ncid} =} netcdf.inqGrpParent(@var{ncid}) Return id of the parent group @xseealso{netcdf.inqGrpName} @end deftypefn @c Low-level functionsGroups netcdf.inqNcid @c ----------------------------------------- @subsubsection netcdf.inqNcid @cindex inqNcid @deftypefn {} {@var{grp_ncid} =} netcdf.inqNcid(@var{ncid},@var{name}) Return group id based on its name @xseealso{netcdf.inqGrpFullNcid} @end deftypefn @c Low-level functionsGroups netcdf.inqVarIDs @c ----------------------------------------- @subsubsection netcdf.inqVarIDs @cindex inqVarIDs @deftypefn {} {@var{varids} = } netcdf.inqVarID (@var{ncid}) Return all variable ids. This functions returns all variable ids in a NetCDF file or NetCDF group. @xseealso{netcdf.inqVarID} @end deftypefn @c --------------------------------------------------- @node Low-level functions - Variables @subsection Variables @cindex Low-level functions - Variables @c Low-level functionsVariables netcdf.defVar @c ----------------------------------------- @subsubsection netcdf.defVar @cindex defVar @deftypefn {} {@var{varid} = } netcdf.defVar(@var{ncid},@var{name},@var{xtype},@var{dimids}) Defines a variable with the name @var{name} in the dataset @var{ncid}. @var{xtype} can be "byte", "ubyte", "short", "ushort", "int", "uint", "int64", "uint64", "float", "double", "char" or the corresponding number as returned by netcdf.getConstant. The parameter @var{dimids} define the ids of the dimension. For scalar this parameter is the empty array ([]). The variable id is returned. @end deftypefn @c Low-level functionsVariables netcdf.defVarChunking @c ----------------------------------------- @subsubsection netcdf.defVarChunking @cindex defVarChunking @deftypefn {} {} netcdf.defVarChunking (@var{ncid},@var{varid},@var{storage},@var{chunkSizes}) Define the chunking settings of NetCDF variable @var{varid}. If @var{storage} is the string "chunked", the variable is stored by chunk of the size @var{chunkSizes}.@* If @var{storage} is the string "contiguous", the variable is stored in a contiguous way. @end deftypefn @c Low-level functionsVariables netcdf.defVarDeflate @c ----------------------------------------- @subsubsection netcdf.defVarDeflate @cindex defVarDeflate @deftypefn {} {} netcdf.defVarDeflate (@var{ncid},@var{varid},@var{shuffle},@var{deflate},@var{deflate_level}) Define the compression settings NetCDF variable @var{varid}. If @var{deflate} is true, then the variable is compressed. The compression level @var{deflate_level} is an integer between 0 (no compression) and 9 (maximum compression). @end deftypefn @c Low-level functionsVariables netcdf.defVarFill @c ----------------------------------------- @subsubsection netcdf.defVarFill @cindex defVarFill @deftypefn {} {} netcdf.defVarFill(@var{ncid},@var{varid},@var{no_fill},@var{fillvalue}) Define the fill-value settings of the NetCDF variable @var{varid}. If @var{no_fill} is false, then the values between no-contiguous writes are filled with the value @var{fill_value}. This is disabled by setting @var{no_fill} to true. @end deftypefn @c Low-level functionsVariables netcdf.defVarFletcher32 @c ----------------------------------------- @subsubsection netcdf.defVarFletcher32 @cindex defVarFletcher32 @deftypefn {} {} netcdf.defVarFletcher32(@var{ncid},@var{varid},@var{checksum}) Defines the checksum settings of the variable with the id @var{varid} in the data set @var{ncid}. If @var{checksum} is the string "FLETCHER32", then fletcher32 checksums will be turned on for this variable. If @var{checksum} is "NOCHECKSUM", then checksums will be disabled. @end deftypefn @c Low-level functionsVariables netcdf.getVar @c ----------------------------------------- @subsubsection netcdf.getVar @cindex getVar @deftypefn {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid}) @deftypefnx {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid},@var{start}) @deftypefnx {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid},@var{start},@var{count}) @deftypefnx {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid},@var{start},@var{count},@var{stride}) Get the data from a NetCDF variable. # The data @var{data} is loaded from the variable @var{varid} of the NetCDF file @var{ncid}. @var{start} is the start index of each dimension (0-based and defaults to a vector of zeros), @var{count} is the number of elements of to be written along each dimension (default all elements) @var{stride} is the sampling interval. @end deftypefn @c Low-level functionsVariables netcdf.inqVar @c ----------------------------------------- @subsubsection netcdf.inqVar @cindex inqVar @deftypefn {} {[@var{name},@var{nctype},@var{dimids},@var{nattr}] = } netcdf.inqVar (@var{ncid},@var{varid}) Inquires information about a NetCDF variable. This functions returns the @var{name}, the NetCDF type @var{nctype}, an array of dimension ids @var{dimids} and the number of attributes @var{nattr} of the NetCDF variable. @var{nctype} in an integer corresponding NetCDF constants. @xseealso{netcdf.inqVarID,netcdf.getConstant} @end deftypefn @c Low-level functionsVariables netcdf.inqVarChunking @c ----------------------------------------- @subsubsection netcdf.inqVarChunking @cindex inqVarChunking @deftypefn {} {[@var{storage},@var{chunkSizes}] = } netcdf.inqVarChunking (@var{ncid},@var{varid}) Determines the chunking settings of NetCDF variable @var{varid}. If @var{storage} is the string "chunked", the variable is stored by chunk of the size @var{chunkSizes}.@* If @var{storage} is the string "contiguous", the variable is stored in a contiguous way. @end deftypefn @c Low-level functionsVariables netcdf.inqVarDeflate @c ----------------------------------------- @subsubsection netcdf.inqVarDeflate @cindex inqVarDeflate @deftypefn {} {[@var{shuffle},@var{deflate},@var{deflate_level}] = } netcdf.inqVarDeflate (@var{ncid},@var{varid}) Determines the compression settings NetCDF variable @var{varid}. If @var{deflate} is true, then the variable is compressed. The compression level @var{deflate_level} is an integer between 0 (no compression) and 9 (maximum compression). @end deftypefn @c Low-level functionsVariables netcdf.inqVarFill @c ----------------------------------------- @subsubsection netcdf.inqVarFill @cindex inqVarFill @deftypefn {} {[@var{no_fill},@var{fillvalue}] = } netcdf.inqVarFill(@var{ncid},@var{varid}) Determines the fill-value settings of the NetCDF variable @var{varid}. If @var{no_fill} is false, then the values between no-contiguous writes are filled with the value @var{fill_value}. This is disabled by setting @var{no_fill} to true. @end deftypefn @c Low-level functionsVariables netcdf.inqVarFletcher32 @c ----------------------------------------- @subsubsection netcdf.inqVarFletcher32 @cindex inqVarFletcher32 @deftypefn {} {@var{checksum} =} netcdf.inqVarFletcher32(@var{ncid},@var{varid}) Determines the checksum settings of the variable with the id @var{varid} in the data set @var{ncid}. If fletcher32 checksums is turned on for this variable, then @var{checksum} is the string "FLETCHER32". Otherwise it is the string "NOCHECKSUM". @end deftypefn @c Low-level functionsVariables netcdf.inqVarID @c ----------------------------------------- @subsubsection netcdf.inqVarID @cindex inqVarID @deftypefn {} {@var{varid} = } netcdf.inqVarID (@var{ncid},@var{name}) Return the id of a variable based on its name. @xseealso{netcdf.defVar, netcdf.inqVarIDs} @end deftypefn @c Low-level functionsVariables netcdf.putVar @c ----------------------------------------- @subsubsection netcdf.putVar @cindex putVar @deftypefn {} {} netcdf.putVar (@var{ncid},@var{varid},@var{data}) @deftypefnx {} {} netcdf.putVar (@var{ncid},@var{varid},@var{start},@var{data}) @deftypefnx {} {} netcdf.putVar (@var{ncid},@var{varid},@var{start},@var{count},@var{data}) @deftypefnx {} {} netcdf.putVar (@var{ncid},@var{varid},@var{start},@var{count},@var{stride},@var{data}) Put data in a NetCDF variable. The data @var{data} is stored in the variable @var{varid} of the NetCDF file @var{ncid}. @var{start} is the start index of each dimension (0-based and defaults to a vector of zeros), @var{count} is the number of elements of to be written along each dimension (default all elements) @var{stride} is the sampling interval. @end deftypefn @c Low-level functionsVariables netcdf.renameVar @c ----------------------------------------- @subsubsection netcdf.renameVar @cindex renameVar @deftypefn {} {} netcdf.renameVar(@var{ncid},@var{varid},@var{name}) Renames the variable with the id @var{varid} in the data set @var{ncid}. @var{name} is the new name of the variable. @end deftypefn @c --------------------------------------------------- @node Low-level functions - Attributes @subsection Attributes @cindex Low-level functions - Attributes @c Low-level functionsAttributes netcdf.copyAtt @c ----------------------------------------- @subsubsection netcdf.copyAtt @cindex copyAtt @deftypefn {} {} netcdf.copyAtt (@var{ncid},@var{varid},@var{name},@var{ncid_out},@var{varid_out}) Copies the attribute named @var{old_name} of the variable @var{varid} in the data set @var{ncid} to the variable @var{varid_out} in the data set @var{ncid_out}. To copy a global attribute use netcdf.getConstant("global") for @var{varid} or @var{varid_out}. @xseealso{netcdf.getAtt,netcdf.getConstant} @end deftypefn @c Low-level functionsAttributes netcdf.delAtt @c ----------------------------------------- @subsubsection netcdf.delAtt @cindex delAtt @deftypefn {} {} netcdf.delAtt(@var{ncid},@var{varid},@var{name}) Deletes the attribute named @var{name} of the variable @var{varid} in the data set @var{ncid}. To delete a global attribute use netcdf.getConstant("global") for @var{varid}. @xseealso{netcdf.defAtt,netcdf.getConstant} @end deftypefn @c Low-level functionsAttributes netcdf.getAtt @c ----------------------------------------- @subsubsection netcdf.getAtt @cindex getAtt @deftypefn {} {@var{data} =} netcdf.getAtt (@var{ncid},@var{varid},@var{name}) Get the value of a NetCDF attribute. This function returns the value of the attribute called @var{name} of the variable @var{varid} in the NetCDF file @var{ncid}. For global attributes @var{varid} can be netcdf.getConstant("global"). @xseealso{netcdf.putAtt} @end deftypefn @c Low-level functionsAttributes netcdf.inqAtt @c ----------------------------------------- @subsubsection netcdf.inqAtt @cindex inqAtt @deftypefn {} {[@var{xtype},@var{len}] = } netcdf.inqAtt(@var{ncid},@var{varid},@var{name}) Get attribute type and length. @xseealso{netcdf.inqAttName} @end deftypefn @c Low-level functionsAttributes netcdf.inqAttID @c ----------------------------------------- @subsubsection netcdf.inqAttID @cindex inqAttID @deftypefn {} {@var{attnum} =} netcdf.inqAttID(@var{ncid},@var{varid},@var{attname}) Return the attribute id @var{attnum} of the attribute named @var{attname} of the variable @var{varid} in the dataset @var{ncid}. For global attributes @var{varid} can be netcdf.getConstant("global"). @xseealso{netcdf.inqAttName} @end deftypefn @c Low-level functionsAttributes netcdf.inqAttName @c ----------------------------------------- @subsubsection netcdf.inqAttName @cindex inqAttName @deftypefn {} {@var{name} =} netcdf.inqAttName (@var{ncid},@var{varid},@var{attnum}) Get the name of a NetCDF attribute. This function returns the name of the attribute with the id @var{attnum} of the variable @var{varid} in the NetCDF file @var{ncid}. For global attributes @var{varid} can be netcdf.getConstant("global"). @xseealso{netcdf.inqAttName} @end deftypefn @c Low-level functionsAttributes netcdf.putAtt @c ----------------------------------------- @subsubsection netcdf.putAtt @cindex putAtt @deftypefn {} {} netcdf.putAtt (@var{ncid},@var{varid},@var{name},@var{data}) Defines a NetCDF attribute. This function defines the attribute called @var{name} of the variable @var{varid} in the NetCDF file @var{ncid}. The value of the attribute will be @var{data}. For global attributes @var{varid} can be netcdf.getConstant("global"). @xseealso{netcdf.getAtt} @end deftypefn @c Low-level functionsAttributes netcdf.renameAtt @c ----------------------------------------- @subsubsection netcdf.renameAtt @cindex renameAtt @deftypefn {} {} netcdf.renameAtt(@var{ncid},@var{varid},@var{old_name},@var{new_name}) Renames the attribute named @var{old_name} of the variable @var{varid} in the data set @var{ncid}. @var{new_name} is the new name of the attribute. To rename a global attribute use netcdf.getConstant("global") for @var{varid}. @xseealso{netcdf.copyAtt,netcdf.getConstant} @end deftypefn @c --------------------------------------------------- @node Low-level functions - User-Defined Types @subsection User-Defined Types @cindex Low-level functions - User-Defined Types @c Low-level functionsUser-Defined Types netcdf.defVlen @c ----------------------------------------- @subsubsection netcdf.defVlen @cindex defVlen @deftypefn {} {@var{varid} = } netcdf.defVlen(@var{ncid},@var{typename},@var{basetype}) Defines a NC_VLEN variable length array type with the type name @var{typename} and a base datatype of @var{basetype} in the dataset @var{ncid}. @var{basetype} can be "byte", "ubyte", "short", "ushort", "int", "uint", "int64", "uint64", "float", "double", "char" or the corresponding number as returned by netcdf.getConstant. The new data type id is returned. @end deftypefn @c Low-level functionsUser-Defined Types netcdf.inqUserType @c ----------------------------------------- @subsubsection netcdf.inqUserType @cindex inqUserType @deftypefn {} {[@var{typename}, @var{bytesize}, @var{basetypeid}, @var{numfields}, @var{classid}] = } netcdf.inqUserType(@var{ncid},@var{typeid}) Provide information on a user defined type @var{typeid} in the dataset @var{ncid}. The function returns the typename, bytesize, base type id, number of fields and class identifier of the type. @end deftypefn @c Low-level functionsUser-Defined Types netcdf.inqVlen @c ----------------------------------------- @subsubsection netcdf.inqVlen @cindex inqVlen @deftypefn {} {[@var{typename}, @var{bytesize}, @var{basetypeid}] = } netcdf.inqVlen(@var{ncid},@var{typeid}) Provide information on a NC_VLEN variable length array type @var{typeid} in the dataset @var{ncid}. The function returns the typename, bytesize, and base type id. @end deftypefn @c --------------------------------------------------- @node Low-level functions - Utilities @subsection Utilities @cindex Low-level functions - Utilities @c Low-level functionsUtilities netcdf.getConstant @c ----------------------------------------- @subsubsection netcdf.getConstant @cindex getConstant @deftypefn {} {@var{value} =} netcdf.getConstant(@var{name}) Returns the value of a NetCDF constant called @var{name}. @xseealso{netcdf.getConstantNames} @end deftypefn @c Low-level functionsUtilities netcdf.getConstantNames @c ----------------------------------------- @subsubsection netcdf.getConstantNames @cindex getConstantNames @deftypefn {} {@var{value} =} netcdf.getConstantNames() Returns a list of all constant names. @end deftypefn @c --------------------------------------------------- @node Test function @section Test function @cindex Test function @c Test function test_netcdf @c ----------------------------------------- @subsection test_netcdf @cindex test_netcdf @deftypefn {} {} test_netcdf Function to do a basic test of the netcdf interface @end deftypefn netcdf-1.0.20/doc/gpl.texi0000644000000000000000000010433015205072111012200 0ustar00@node Copying @appendix GNU General Public License @cindex warranty @cindex copyright @center Version 3, 29 June 2007 @display Copyright @copyright{} 2007 Free Software Foundation, Inc. @url{http://fsf.org/} Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. @end display @heading Preamble The GNU General Public License is a free, copyleft license for software and other kinds of works. 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Regardless of what server hosts the Corresponding Source, you remain obligated to ensure that it is available for as long as needed to satisfy these requirements. @item Convey the object code using peer-to-peer transmission, provided you inform other peers where the object code and Corresponding Source of the work are being offered to the general public at no charge under subsection 6d. @end enumerate A separable portion of the object code, whose source code is excluded from the Corresponding Source as a System Library, need not be included in conveying the object code work. A ``User Product'' is either (1) a ``consumer product'', which means any tangible personal property which is normally used for personal, family, or household purposes, or (2) anything designed or sold for incorporation into a dwelling. In determining whether a product is a consumer product, doubtful cases shall be resolved in favor of coverage. For a particular product received by a particular user, ``normally used'' refers to a typical or common use of that class of product, regardless of the status of the particular user or of the way in which the particular user actually uses, or expects or is expected to use, the product. A product is a consumer product regardless of whether the product has substantial commercial, industrial or non-consumer uses, unless such uses represent the only significant mode of use of the product. ``Installation Information'' for a User Product means any methods, procedures, authorization keys, or other information required to install and execute modified versions of a covered work in that User Product from a modified version of its Corresponding Source. The information must suffice to ensure that the continued functioning of the modified object code is in no case prevented or interfered with solely because modification has been made. If you convey an object code work under this section in, or with, or specifically for use in, a User Product, and the conveying occurs as part of a transaction in which the right of possession and use of the User Product is transferred to the recipient in perpetuity or for a fixed term (regardless of how the transaction is characterized), the Corresponding Source conveyed under this section must be accompanied by the Installation Information. But this requirement does not apply if neither you nor any third party retains the ability to install modified object code on the User Product (for example, the work has been installed in ROM). The requirement to provide Installation Information does not include a requirement to continue to provide support service, warranty, or updates for a work that has been modified or installed by the recipient, or for the User Product in which it has been modified or installed. Access to a network may be denied when the modification itself materially and adversely affects the operation of the network or violates the rules and protocols for communication across the network. Corresponding Source conveyed, and Installation Information provided, in accord with this section must be in a format that is publicly documented (and with an implementation available to the public in source code form), and must require no special password or key for unpacking, reading or copying. @item Additional Terms. ``Additional permissions'' are terms that supplement the terms of this License by making exceptions from one or more of its conditions. Additional permissions that are applicable to the entire Program shall be treated as though they were included in this License, to the extent that they are valid under applicable law. If additional permissions apply only to part of the Program, that part may be used separately under those permissions, but the entire Program remains governed by this License without regard to the additional permissions. When you convey a copy of a covered work, you may at your option remove any additional permissions from that copy, or from any part of it. (Additional permissions may be written to require their own removal in certain cases when you modify the work.) You may place additional permissions on material, added by you to a covered work, for which you have or can give appropriate copyright permission. Notwithstanding any other provision of this License, for material you add to a covered work, you may (if authorized by the copyright holders of that material) supplement the terms of this License with terms: @enumerate a @item Disclaiming warranty or limiting liability differently from the terms of sections 15 and 16 of this License; or @item Requiring preservation of specified reasonable legal notices or author attributions in that material or in the Appropriate Legal Notices displayed by works containing it; or @item Prohibiting misrepresentation of the origin of that material, or requiring that modified versions of such material be marked in reasonable ways as different from the original version; or @item Limiting the use for publicity purposes of names of licensors or authors of the material; or @item Declining to grant rights under trademark law for use of some trade names, trademarks, or service marks; or @item Requiring indemnification of licensors and authors of that material by anyone who conveys the material (or modified versions of it) with contractual assumptions of liability to the recipient, for any liability that these contractual assumptions directly impose on those licensors and authors. @end enumerate All other non-permissive additional terms are considered ``further restrictions'' within the meaning of section 10. If the Program as you received it, or any part of it, contains a notice stating that it is governed by this License along with a term that is a further restriction, you may remove that term. If a license document contains a further restriction but permits relicensing or conveying under this License, you may add to a covered work material governed by the terms of that license document, provided that the further restriction does not survive such relicensing or conveying. If you add terms to a covered work in accord with this section, you must place, in the relevant source files, a statement of the additional terms that apply to those files, or a notice indicating where to find the applicable terms. Additional terms, permissive or non-permissive, may be stated in the form of a separately written license, or stated as exceptions; the above requirements apply either way. @item Termination. You may not propagate or modify a covered work except as expressly provided under this License. Any attempt otherwise to propagate or modify it is void, and will automatically terminate your rights under this License (including any patent licenses granted under the third paragraph of section 11). However, if you cease all violation of this License, then your license from a particular copyright holder is reinstated (a) provisionally, unless and until the copyright holder explicitly and finally terminates your license, and (b) permanently, if the copyright holder fails to notify you of the violation by some reasonable means prior to 60 days after the cessation. Moreover, your license from a particular copyright holder is reinstated permanently if the copyright holder notifies you of the violation by some reasonable means, this is the first time you have received notice of violation of this License (for any work) from that copyright holder, and you cure the violation prior to 30 days after your receipt of the notice. Termination of your rights under this section does not terminate the licenses of parties who have received copies or rights from you under this License. If your rights have been terminated and not permanently reinstated, you do not qualify to receive new licenses for the same material under section 10. @item Acceptance Not Required for Having Copies. You are not required to accept this License in order to receive or run a copy of the Program. Ancillary propagation of a covered work occurring solely as a consequence of using peer-to-peer transmission to receive a copy likewise does not require acceptance. However, nothing other than this License grants you permission to propagate or modify any covered work. These actions infringe copyright if you do not accept this License. Therefore, by modifying or propagating a covered work, you indicate your acceptance of this License to do so. @item Automatic Licensing of Downstream Recipients. Each time you convey a covered work, the recipient automatically receives a license from the original licensors, to run, modify and propagate that work, subject to this License. You are not responsible for enforcing compliance by third parties with this License. An ``entity transaction'' is a transaction transferring control of an organization, or substantially all assets of one, or subdividing an organization, or merging organizations. If propagation of a covered work results from an entity transaction, each party to that transaction who receives a copy of the work also receives whatever licenses to the work the party's predecessor in interest had or could give under the previous paragraph, plus a right to possession of the Corresponding Source of the work from the predecessor in interest, if the predecessor has it or can get it with reasonable efforts. You may not impose any further restrictions on the exercise of the rights granted or affirmed under this License. For example, you may not impose a license fee, royalty, or other charge for exercise of rights granted under this License, and you may not initiate litigation (including a cross-claim or counterclaim in a lawsuit) alleging that any patent claim is infringed by making, using, selling, offering for sale, or importing the Program or any portion of it. @item Patents. A ``contributor'' is a copyright holder who authorizes use under this License of the Program or a work on which the Program is based. The work thus licensed is called the contributor's ``contributor version''. A contributor's ``essential patent claims'' are all patent claims owned or controlled by the contributor, whether already acquired or hereafter acquired, that would be infringed by some manner, permitted by this License, of making, using, or selling its contributor version, but do not include claims that would be infringed only as a consequence of further modification of the contributor version. For purposes of this definition, ``control'' includes the right to grant patent sublicenses in a manner consistent with the requirements of this License. Each contributor grants you a non-exclusive, worldwide, royalty-free patent license under the contributor's essential patent claims, to make, use, sell, offer for sale, import and otherwise run, modify and propagate the contents of its contributor version. In the following three paragraphs, a ``patent license'' is any express agreement or commitment, however denominated, not to enforce a patent (such as an express permission to practice a patent or covenant not to sue for patent infringement). To ``grant'' such a patent license to a party means to make such an agreement or commitment not to enforce a patent against the party. If you convey a covered work, knowingly relying on a patent license, and the Corresponding Source of the work is not available for anyone to copy, free of charge and under the terms of this License, through a publicly available network server or other readily accessible means, then you must either (1) cause the Corresponding Source to be so available, or (2) arrange to deprive yourself of the benefit of the patent license for this particular work, or (3) arrange, in a manner consistent with the requirements of this License, to extend the patent license to downstream recipients. ``Knowingly relying'' means you have actual knowledge that, but for the patent license, your conveying the covered work in a country, or your recipient's use of the covered work in a country, would infringe one or more identifiable patents in that country that you have reason to believe are valid. If, pursuant to or in connection with a single transaction or arrangement, you convey, or propagate by procuring conveyance of, a covered work, and grant a patent license to some of the parties receiving the covered work authorizing them to use, propagate, modify or convey a specific copy of the covered work, then the patent license you grant is automatically extended to all recipients of the covered work and works based on it. A patent license is ``discriminatory'' if it does not include within the scope of its coverage, prohibits the exercise of, or is conditioned on the non-exercise of one or more of the rights that are specifically granted under this License. You may not convey a covered work if you are a party to an arrangement with a third party that is in the business of distributing software, under which you make payment to the third party based on the extent of your activity of conveying the work, and under which the third party grants, to any of the parties who would receive the covered work from you, a discriminatory patent license (a) in connection with copies of the covered work conveyed by you (or copies made from those copies), or (b) primarily for and in connection with specific products or compilations that contain the covered work, unless you entered into that arrangement, or that patent license was granted, prior to 28 March 2007. Nothing in this License shall be construed as excluding or limiting any implied license or other defenses to infringement that may otherwise be available to you under applicable patent law. @item No Surrender of Others' Freedom. If conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot convey a covered work so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not convey it at all. For example, if you agree to terms that obligate you to collect a royalty for further conveying from those to whom you convey the Program, the only way you could satisfy both those terms and this License would be to refrain entirely from conveying the Program. @item Use with the GNU Affero General Public License. Notwithstanding any other provision of this License, you have permission to link or combine any covered work with a work licensed under version 3 of the GNU Affero General Public License into a single combined work, and to convey the resulting work. The terms of this License will continue to apply to the part which is the covered work, but the special requirements of the GNU Affero General Public License, section 13, concerning interaction through a network will apply to the combination as such. @item Revised Versions of this License. The Free Software Foundation may publish revised and/or new versions of the GNU General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies that a certain numbered version of the GNU General Public License ``or any later version'' applies to it, you have the option of following the terms and conditions either of that numbered version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of the GNU General Public License, you may choose any version ever published by the Free Software Foundation. If the Program specifies that a proxy can decide which future versions of the GNU General Public License can be used, that proxy's public statement of acceptance of a version permanently authorizes you to choose that version for the Program. Later license versions may give you additional or different permissions. However, no additional obligations are imposed on any author or copyright holder as a result of your choosing to follow a later version. @item Disclaimer of Warranty. THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM ``AS IS'' WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. @item Limitation of Liability. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. @item Interpretation of Sections 15 and 16. If the disclaimer of warranty and limitation of liability provided above cannot be given local legal effect according to their terms, reviewing courts shall apply local law that most closely approximates an absolute waiver of all civil liability in connection with the Program, unless a warranty or assumption of liability accompanies a copy of the Program in return for a fee. @end enumerate @heading END OF TERMS AND CONDITIONS @heading How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively state the exclusion of warranty; and each file should have at least the ``copyright'' line and a pointer to where the full notice is found. @smallexample @var{one line to give the program's name and a brief idea of what it does.} Copyright (C) @var{year} @var{name of author} This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see @url{http://www.gnu.org/licenses/}. @end smallexample Also add information on how to contact you by electronic and paper mail. If the program does terminal interaction, make it output a short notice like this when it starts in an interactive mode: @smallexample @var{program} Copyright (C) @var{year} @var{name of author} This program comes with ABSOLUTELY NO WARRANTY; for details type @samp{show w}. This is free software, and you are welcome to redistribute it under certain conditions; type @samp{show c} for details. @end smallexample The hypothetical commands @samp{show w} and @samp{show c} should show the appropriate parts of the General Public License. Of course, your program's commands might be different; for a GUI interface, you would use an ``about box''. You should also get your employer (if you work as a programmer) or school, if any, to sign a ``copyright disclaimer'' for the program, if necessary. For more information on this, and how to apply and follow the GNU GPL, see @url{http://www.gnu.org/licenses/}. The GNU General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Lesser General Public License instead of this License. But first, please read @url{http://www.gnu.org/philosophy/why-not-lgpl.html}. netcdf-1.0.20/doc/macros.texi0000644000000000000000000000624115205072111012704 0ustar00@c Copyright (C) 2012-2019 John W. Eaton @c @c This file is part of Octave. @c @c Octave is free software: you can redistribute it and/or modify it @c under the terms of the GNU General Public License as published by @c the Free Software Foundation, either version 3 of the License, or @c (at your option) any later version. @c @c Octave is distributed in the hope that it will be useful, but @c WITHOUT ANY WARRANTY; without even the implied warranty of @c MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the @c GNU General Public License for more details. @c @c You should have received a copy of the GNU General Public License @c along with Octave; see the file COPYING. If not, see @c . @c The following macro marks words that aspell should ignore during @c spellchecking. Within Texinfo it has no effect as it merely replaces @c the macro call with the argument itself. @macro nospell {arg} \arg\ @end macro @c The following macro works around the Info/plain text expansion of @code{XXX} @c which is `XXX'. This looks particularly bad when the macro body is @c single or double-quoted text, such as a property value `"position"' @ifinfo @macro qcode{arg} \arg\ @end macro @end ifinfo @ifnotinfo @macro qcode{arg} @code{\arg\} @end macro @end ifnotinfo @c The following macro is used for the on-line help system, but we don't @c want lots of `See also: foo, bar, and baz' strings cluttering the @c printed manual (that information should be in the supporting text for @c each group of functions and variables). @c @c Implementation Note: @c For TeX, @vskip produces a nice separation. @c For Texinfo, '@sp 1' should work, but in practice produces ugly results @c for HTML. We use a simple blank line to produce the correct @c behavior. @c @c We use @xseealso now because Texinfo introduced its own @seealso @c command. But instead of modifying all source files, we'll have the @c munge-texi script convert @seealso to @xseealso. @macro xseealso {args} @iftex @vskip 2pt @end iftex @ifnottex @end ifnottex @ifnotinfo @noindent @strong{See also:} \args\. @end ifnotinfo @ifinfo @noindent See also: \args\. @end ifinfo @end macro @c The following macro works around a situation where the Info/plain text @c expansion of the @code{XXX} macro is `XXX'. The use of the apostrophe @c can be confusing if the code segment itself ends with a transpose operator. @ifinfo @macro tcode{arg} \arg\ @end macro @end ifinfo @ifnotinfo @macro tcode{arg} @code{\arg\} @end macro @end ifnotinfo @c FIXME: someday, when Texinfo 5.X is standard, we might replace this with @c @backslashchar, which is a new addition to Texinfo. @macro xbackslashchar \\ @end macro @c These may be useful for all, not just for octave.texi. @tex \ifx\rgbDarkRed\thisisundefined \def\rgbDarkRed{0.50 0.09 0.12} \fi \ifx\linkcolor\thisisundefined \relax \else \global\def\linkcolor{\rgbDarkRed} \fi \ifx\urlcolor\thisisundefined \relax \else \global\def\urlcolor{\rgbDarkRed} \fi \ifx\urefurlonlylinktrue\thisisundefined \relax \else \global\urefurlonlylinktrue \fi @end tex @c Make the apostrophe in code examples cut-and-paste friendly. @codequoteundirected on netcdf-1.0.20/doc/mkfuncdocs.py0000755000000000000000000003304215205072111013235 0ustar00#!/usr/bin/env python3 ## Copyright 2018-2025 John Donoghue ## ## This program is free software: you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by ## the Free Software Foundation, either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, but ## WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program. If not, see ## . ## mkfuncdocs v1.0.9 ## mkfuncdocs.py will attempt to extract the help texts from functions in src ## dirs, extracting only those that are in the specifed INDEX file and output them ## to stdout in texi format ## ## It will extract from both .m and the help text for DEFUN_DLD help in .cc/.cpp ## files. ## ## It attempts to find the help text for each function in a file within the src search ## folders that match in order: [ functionname.m functionname.cc functionname.cpp ## functionname_withoutprefix.cc functionname_withoutprefix.cpp ] ## ## The INDEX file can contain additional subgroups in the form of: ## #! Subgroup Name ## ## Usage: ## mkfundocs.py options INDEXfile ## Options can be 0 or more of: ## --verbose : Turn on verbose mode ## --src-dir=xxxxx : Add dir xxxxx to the dirs searched for the function file. ## If no directories are provided, it will default to looking in the ## 'inst' directory. ## --ignore=xxxxx : dont attempt to generate help for function xxxxx. ## --funcprefix=xxxxx : remove xxxxx from the function name when searching for matching ## source file. ## --allowscan : if can not find function, attemp to scan .cc,cpp,cxx files for match ## ## --standalone : generate a texinfo file expected to be used with being included in ## another document file. import sys import os import re import tempfile import shutil import fnmatch import subprocess import glob import calendar; import time; class SubGroup: name = "" functions = [] def __init__ (self, name): if name: self.name = name self.functions = [] class Group: name = "Functions" functions = [] subgroups = [] def __init__ (self, name=""): if name: self.name = name self.functions = [] self.subgroups = [] def add_function(self, f): if len(self.subgroups) == 0: self.functions.append(f); else: functions = self.subgroups[-1].functions functions.append(f) self.subgroups[-1].functions = functions def add_subgroup(self, f): self.subgroups.append(SubGroup(f)) def isempty(self): if len(self.functions): return False for sg in self.subgroups: if len(sg.functions): return False return True def dump(self): print(f"Group {self.name}") for f in self.functions: print(f" {f}") for sg in self.subgroups: print(f" *{sg.name}") for f in sg.functions: print(f" {f}") class Index: name = "" groups = [] def texify_line(line): # convert any special chars in a line to texinfo format # currently just used for group formatting ? line = line.replace("@", "@@") line = line.replace("{", "@{") line = line.replace("}", "@}") line = line.replace(",", "@comma{}") return line def find_defun_line_in_file(filename, fnname): linecnt = 0 defun_line=re.compile(r"^DEFUN_DLD\s*\(\s*{}".format(fnname)) with open(filename, 'rt') as f: for line in f: if re.match(defun_line, line): return linecnt linecnt = linecnt + 1 return -1 def find_function_line_in_file(filename, fnname): linecnt = 0 func = False defun_line=re.compile(r"^\s*function \s*") with open(filename, 'rt') as f: for line in f: if func == True: x = line.strip() if x.startswith("## -*- texinfo -*-"): return linecnt else: func = False if re.match(defun_line, line): if line.find("=") != -1: x = line.split("=") x = x[-1] else: x = line.replace("function ", "") x = x.split("(") x = x[0].strip() if x == fnname: func = True linecnt = linecnt + 1 return -1 def read_m_file(filename, skip=0): help = [] inhelp = False havehelp = False; with open(filename, 'rt') as f: for line in f: line = line.lstrip() if skip > 0: skip = skip - 1 elif not havehelp: if havehelp == False and inhelp == False and line.startswith('##'): if "texinfo" in line: inhelp = True elif inhelp == True: if not line.startswith('##'): inhelp = False havehelp = True else: if line.startswith("## @"): line = line[3:] else: line = line[2:] help.append (line.rstrip()); return help def read_cc_file(filename, skip=0): help = [] inhelp = False havehelp = False; with open(filename, 'rt') as f: for line in f: line = line.lstrip() if skip > 0: skip = skip - 1 elif not havehelp: if havehelp == False and inhelp == False: if "texinfo" in line: inhelp = True elif inhelp == True: line = line.rstrip() if len(line) > 0 and line[-1] == '\\': line = line[:-1] line = line.rstrip() line = line.replace("\\n", "\n") line = line.replace("\\\"", "\"") if len(line) > 0 and line[-1] == '\n': line = line[:-1] # endif a texinfo line elif line.endswith('")'): line = line[:-2] if line.startswith('{'): inhelp = False havehelp = True else: help.append (line); return help def read_help (filename, skip=0): help = [] if filename[-2:] == ".m": help = read_m_file(filename, skip) else: help = read_cc_file(filename, skip) return help def read_index (filename, ignore): index = Index () with open(filename, 'rt') as f: lines = f.read().splitlines() #print ("read", lines) first = True category = Group() for l in lines: if l.startswith("#!"): l = l[2:].strip() category.add_subgroup(l) elif l.startswith("#"): pass elif first: index.name = l; first = False elif l.startswith(" "): l = l.strip() # may be multiple functions here funcs = l.split() for f in funcs: if f not in ignore: category.add_function(l) else: # new category name if not category.isempty(): index.groups.append(category) category = Group(l.strip()) # left over category ? if not category.isempty(): index.groups.append(category) return index; def find_class_file(fname, paths): for f in paths: # class constructor ? name = f + "/@" + fname + "/" + fname + ".m" if os.path.isfile(name): return name, 0 # perhaps classname.func format ? x = fname.split(".") if len(x) > 0: zname = x.pop() cname = ".".join(x) name = f + "/" + cname + ".m" if os.path.isfile(name): idx = find_function_line_in_file(name, zname) if idx >= 0: return name, idx name = f + "/@" + cname + "/" + zname + ".m" if os.path.isfile(name): return name, 0 return None, -1 def find_func_file(fname, paths, prefix, scanfiles=False): for f in paths: name = f + "/" + fname + ".m" if os.path.isfile(name): return name, 0 # class constructor ? name = f + "/@" + fname + "/" + fname + ".m" if os.path.isfile(name): return name, 0 name = f + "/" + fname + ".cc" if os.path.isfile(name): return name, 0 name = f + "/" + fname + ".cpp" if os.path.isfile(name): return name, 0 # if have a prefix, remove and try if prefix and fname.startswith(prefix): fname = fname[len(prefix):] name = f + "/" + fname + ".cc" if os.path.isfile(name): return name, 0 name = f + "/" + fname + ".cpp" if os.path.isfile(name): return name, 0 # if here, we still dont have a file match # if allowed to scan files, do that if scanfiles: #sys.stderr.write("Warning: Scaning for {}\n".format(fname)) for f in paths: files = list(f + "/" + a for a in os.listdir(f)) cc_files = fnmatch.filter(files, "*.cc") cpp_files = fnmatch.filter(files, "*.cpp") cxx_files = fnmatch.filter(files, "*.cxx") for fn in cc_files + cpp_files + cxx_files: line = find_defun_line_in_file(fn, fname) if line >= 0: #sys.stderr.write("Warning: Found function for {} in {} at {}\n".format(fname, fn, line)) return fn, line return None, -1 def display_standalone_header(): # make a file that doesnt need to be included in a texinfo file to # be valid print("@c mkfuncdocs output for a standalone function list") print("@include macros.texi") print("@ifnottex") print("@node Top") print("@top Function Documentation") print("Function documentation extracted from texinfo source in octave source files.") print("@contents") print("@end ifnottex") print("@node Function Reference") print("@chapter Function Reference") print("@cindex Function Reference") def display_standalone_footer(): print("@bye") def display_func(name, ref, help, is_subgroup): print ("@c -----------------------------------------") if is_subgroup: print ("@subsubsection {}".format(name)) else: print ("@subsection {}".format(name)) print ("@cindex {}".format(ref)) for l in help: print ("{}".format(l)) def process_function_help(g_name, f, options, is_subgroup=False): if True: print ("@c {} {}".format(g_name, f)) h = "" filename = "" path = "" if "@" in f: #print ("class func") path = f name = "@" + f ref = f.split("/")[-1] filename, lineno = find_func_file(path, options["srcdir"], options["funcprefix"]) elif "." in f: path = f ref = f.split(".")[-1] name = f.split(".")[-1] filename, lineno = find_class_file(path, options["srcdir"]) if not filename: parts = f.split('.') cnt = 0 path = "" for p in parts: if cnt < len(parts)-1: path = path + "/+" else: path = path + "/" path = path + p cnt = cnt + 1 name = f; ref = parts[-1] filename, lineno = find_func_file(path, options["srcdir"], options["funcprefix"]) elif "/" in f: path = f name = f ref = f.split("/")[-1] filename, lineno = find_func_file(path, options["srcdir"], options["funcprefix"]) else: path = f name = f ref = f filename, lineno = find_func_file(path, options["srcdir"], options["funcprefix"], options['allowscan']) if not filename: sys.stderr.write("Warning: Cant find source file for {}\n".format(f)) else: h = read_help (filename, lineno) if h: display_func (name, ref, h, is_subgroup) def process (args): options = { "verbose": False, "srcdir": [], "funcprefix": "", "ignore": [], "standalone": False, "allowscan": False } indexfile = "" for a in args: #print ("{}".format(a)) c=a.split("=") key=c[0] if len(c) > 1: val=c[1] else: val="" if key == "--verbose": options["verbose"] = True; if key == "--standalone": options["standalone"] = True; elif key == "--allowscan": options["allowscan"] = True; elif key == "--src-dir": if val: options["srcdir"].append(val); elif key == "--ignore": if val: options["ignore"].append(val); elif key == "--func-prefix": if val: options["funcprefix"] = val; elif val == "": if indexfile == "": indexfile = key if indexfile == "": raise Exception("No index filename") if len(options["srcdir"]) == 0: options["srcdir"].append("inst") #print "options=", options if options['standalone']: display_standalone_header() idx = read_index(indexfile, options["ignore"]) for g in idx.groups: #print ("************ {}".format(g.name)) g_name = texify_line(g.name) print ("@c ---------------------------------------------------") print ("@node {}".format(g_name)) print ("@section {}".format(g_name)) print ("@cindex {}".format(g_name)) for f in sorted(g.functions): process_function_help(g_name, f, options) for sg in g.subgroups: sg_name = texify_line(sg.name) print ("@c ---------------------------------------------------") print ("@node {}".format(g_name + " - " + sg_name)) print ("@subsection {}".format(sg_name)) print ("@cindex {}".format(g_name + " - " + sg_name)) for f in sorted(sg.functions): process_function_help(g_name + sg_name, f, options, True) if options['standalone']: display_standalone_footer() def show_usage(): print (sys.argv[0], "[options] indexfile") if __name__ == "__main__": if len(sys.argv) > 1: status = process(sys.argv[1:]) sys.exit(status) else: show_usage() netcdf-1.0.20/doc/mkqhcp.py0000755000000000000000000001521715205072111012370 0ustar00#!/usr/bin/env python3 ## mkqhcp.py ## Version 1.0.6 ## Copyright 2022-2025 John Donoghue ## ## This program is free software: you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by ## the Free Software Foundation, either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, but ## WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program. If not, see ## . import sys import os import re def process(name): with open(name + ".qhcp", 'wt') as f: f.write ('\n') f.write ('\n') f.write (' \n') f.write (' \n') f.write (' \n') f.write (' {0}.qhp\n'.format(name)) f.write (' {0}.qch\n'.format(name)) f.write (' \n') f.write (' \n') f.write (' \n') f.write (' {0}.qch\n'.format(name)) f.write (' \n') f.write (' \n') f.write ('\n') title = name pat_match = re.compile(r".*(?P<title>[^<]+).*") with open(name + ".html", 'rt') as fin: # find html for line in fin: line = line.strip() e = pat_match.match(line) if e: title = e.group("title") break # section h2_match = re.compile(r'.*

]*>(?P[^<]+)</h2>.*') # appendix h2a_match = re.compile(r'.*<h2 class="appendix"[^>]*>(?P<title>[^<]+)</h2>.*') # index h2i_match = re.compile(r'.*<h2 class="unnumbered"[^>]*>(?P<title>[^<]+)</h2>.*') h3_match = re.compile(r'.*<h3 class="section"[^>]*>(?P<title>[^<]+)</h3>.*') h4_match = re.compile(r'.*<h4 class="subsection"[^>]*>(?P<title>[^<]+)</h4>.*') h5_match = re.compile(r'.*<h4 class="subsubsection"[^>]*>(?P<title>[^<]+)</h4>.*') tag_match1 = re.compile(r'.*<span id="(?P<tag>[^"]+)"[^>]*></span>.*') #tag_match2 = re.compile(r'.*<div class="[sub]*section" id="(?P<tag>[^"]+)"[^>]*>.*') tag_match2 = re.compile(r'.*<div class="[sub]*section[^"]*" id="(?P<tag>[^"]+)"[^>]*>.*') tag_match3 = re.compile(r'.*<div class="chapter-level-extent" id="(?P<tag>[^"]+)"[^>]*>.*') tag_match4 = re.compile(r'.*<div class="appendix-level-extent" id="(?P<tag>[^"]+)"[^>]*>.*') tag_match5 = re.compile(r'.*<div class="unnumbered-level-extent" id="(?P<tag>[^"]+)"[^>]*>.*') index_match = re.compile(r'.*<h4 class="[sub]+section"[^>]*>[\d\.\s]*(?P<name>[^<]+)</h4>.*') index_match2 = re.compile(r'.*<h4 class="[sub]+section"[^>]*><span>[\d\.\s]*(?P<name>[^<]+)<.*') tag = "top" has_h2 = False has_h3 = False has_h4 = False #pat_match = re.compile(r'.*<span id="(?P<tag>[^"])"></span>(?P<title>[.]+)$') with open(name + ".html", 'rt') as fin: with open(name + ".qhp", 'wt') as f: f.write('<?xml version="1.0" encoding="UTF-8"?>\n') f.write('<QtHelpProject version="1.0">\n') f.write(' <namespace>octave.community.{}</namespace>\n'.format(name)) f.write(' <virtualFolder>doc</virtualFolder>\n') f.write(' <filterSection>\n') f.write(' <toc>\n') f.write(' <section title="{} Manual" ref="{}.html">\n'.format(title, name)) # chapters here for line in fin: line = line.strip() e = tag_match1.match(line) if not e: e = tag_match2.match(line) if not e: e = tag_match3.match(line) if not e: e = tag_match4.match(line) if not e: e = tag_match5.match(line) if e: tag = e.group("tag") e = h2_match.match(line) if not e: e = h2a_match.match(line) if not e: e = h2i_match.match(line) if e: if has_h4: f.write(' </section>\n') has_h4 = False if has_h3: f.write(' </section>\n') has_h3 = False if has_h2: f.write(' </section>\n') has_h2 = True f.write(' <section title="{}" ref="{}.html#{}">\n'.format(e.group("title"), name, tag)) e = h3_match.match(line) if e: if has_h4: f.write(' </section>\n') has_h4 = False if has_h3: f.write(' </section>\n') has_h3 = True f.write(' <section title="{}" ref="{}.html#{}">\n'.format(e.group("title"), name, tag)) e = h4_match.match(line) if e: if has_h4: f.write(' </section>\n') has_h4 = True #f.write(' <section title="{}" ref="{}.html#{}"></section>\n'.format(e.group("title"), name, tag)) f.write(' <section title="{}" ref="{}.html#{}">\n'.format(e.group("title"), name, tag)) e = h5_match.match(line) if e: f.write(' <section title="{}" ref="{}.html#{}"></section>\n'.format(e.group("title"), name, tag)) if has_h4: f.write(' </section>\n') if has_h3: f.write(' </section>\n') if has_h2: f.write(' </section>\n') f.write(' </section>\n') f.write(' </toc>\n') f.write(' <keywords>\n') fin.seek(0) for line in fin: line = line.strip() e = tag_match1.match(line) if not e: e = tag_match2.match(line) if e: tag = e.group("tag") e = index_match.match(line) if not e: e = index_match2.match(line) if e: f.write(' <keyword name="{}" ref="{}.html#{}"></keyword>\n'.format(e.group("name"), name, tag)) f.write(' </keywords>\n') f.write(' <files>\n') f.write(' <file>{}.html</file>\n'.format(name)) f.write(' <file>{}.css</file>\n'.format(name)) f.write(' </files>\n') f.write(' </filterSection>\n') f.write('</QtHelpProject>\n') def show_usage(): print (sys.argv[0], "projname") if __name__ == "__main__": if len(sys.argv) > 1: status = process(sys.argv[1]) sys.exit(status) else: show_usage() ���������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������netcdf-1.0.20/doc/octave-netcdf.css�����������������������������������������������������������������0000644�0000000�0000000�00000001337�15205072111�013762� 0����������������������������������������������������������������������������������������������������ustar�00�������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������pre.example, .header, .float-caption, hr { /* base00 ~ body text in light solarized theme */ color: #657b83; border-color: #657b83; } pre.example { /* base3 ~ background color in light solarized theme */ background-color: #fdf6e3; padding: 0.5em; } table.cartouche { border: 1px solid #948473; background-color: #FFE3C6; width: 100%; } table.cartouche td, table.cartouche th { border: 1px solid #948473; padding: 4px 4px; } /* newer texinfo generation styles */ div.example { /* base00 ~ body text in light solarized theme */ color: #657b83; border-color: #657b83; } pre.example-preformatted { /* base3 ~ background color in light solarized theme */ background-color: #fdf6e3; padding: 0.5em; } �������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������netcdf-1.0.20/doc/octave-netcdf.html����������������������������������������������������������������0000644�0000000�0000000�00000433576�15205072111�014154� 0����������������������������������������������������������������������������������������������������ustar�00�������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������<!DOCTYPE html> <html> <!-- Created by GNU Texinfo 7.2, https://www.gnu.org/software/texinfo/ --> <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <title>Octave NetCDF - A NetCDF interface for Octave

Introduction

The Octave NetCDF toolkit is a set of NetCDF routines for GNU Octave

Table of Contents

1 Installing and loading

The toolkit must be installed and then loaded to be used.

It can be installed in GNU Octave directly from the website, or can be installed in an off-line mode via a downloaded tarball.

The toolkit has a dependency on the netcdf library (https://www.unidata.ucar.edu/software/netcdf/), so it must be installed in order to successfully install the toolkit.

The toolkit must be then be loaded once per each GNU Octave session in order to use its functionality.

1.1 Online Direct install

With an internet connection available, the package can be installed from octave-forge using the following command within GNU Octave: 

pkg install -forge netcdf

The latest released version of the toolkit will be downloaded and installed.

1.2 Off-line install

With the toolkit package already downloaded, and in the current directory when running GNU Octave, the package can be installed using the following command within GNU Octave: 

pkg install netcdf-1.0.20.tar.gz

1.3 Loading

Regardless of the method of installing the toolkit, in order to use its functions, the toolkit must be loaded using the pkg load command: 

pkg load netcdf

The toolkit must be loaded on each GNU Octave session.

2 Basic Usage Overview

The toolkit provides high and level functionality for reading and writing NetCDF format files.

2.1 High level functionality

The toolkit provides the following high level functions:

  • nccreate
  • ncdisp
  • ncinfo
  • ncreadatt
  • ncread
  • ncwriteatt
  • ncwrite
  • ncwriteschema

2.2 Low level functionality

The package aims to implement the netcdf interface of MATLAB in GNU Octave, however GNU Octave does not support the import function but the functions are available as netcdf.functionname

3 Function Reference

The functions currently available in the toolkit are described below;

3.1 High-level functions

3.1.1 nccreate

: nccreate(filename,varname)
: nccreate(filename,varname,"property",value,...)

Create the variable varname in the file filename.

Properties

The following properties can be used:

  • "Dimensions": a cell array with the dimension names followed by their length or Inf if the dimension is unlimited. If the property is omitted, a scalar variable is created.
  • "Datatype": a string with the Octave data type name (see ncinfo for the correspondence between Octave and NetCDF data types). The default data type is a "double".
  • "Format": This can be "netcdf4_classic" (default), "classic", "64bit" or "netcdf4".
  • "FillValue": the value used for undefined elements of the NetCDF variable.
  • "ChunkSize": the size of the data chunks. If omitted, the variable is not chunked.
  • "DeflateLevel": The deflate level for compression. It can be the string "disable" (default) for no compression or an integer between 0 (no compression) and 9 (maximum compression).
  • "Shuffle": true for enabling the shuffle filter or false (default) for disabling it.

Example

 nccreate("test.nc","temp","Dimensions",{"lon",10,"lat",20},"Format","classic");
 ncdisp("test.nc");

See also: ncwrite.

3.1.2 ncdisp

: ncdisp (filename)

Display meta-data of the NetCDF file filename

Example

 ncdisp("test.nc");

See also: ncinfo.

3.1.3 ncinfo

: info = ncinfo (filename)
: info = ncinfo (filename, varname)
: info = ncinfo (filename, groupname)

Return information about an entire NetCDF file filename (i.e. the root group "/"), about the variable called varname or the group called groupname.

The structure info has always the following fields:

  • Filename: the name of the NetCDF file
  • Format: one of the strings "CLASSIC", "64BIT", "NETCDF4" or "NETCDF4_CLASSIC"

The structure info has additional fields depending on whether a group of variable is queried.

Groups

Groups are returned as an array structure with the following fields:

  • Name: the group name. The root group is named "/".
  • Dimensions: a array structure with the dimensions.
  • Variables: a array structure with the variables.
  • Attributes: a array structure with global attributes.
  • Groups: a array structure (one for each group) with the same fields as this structure.

Dimensions

Dimensions are returned as an array structure with the following fields:

  • Name: the name of the dimension
  • Length: the length of the dimension
  • Unlimited: true of the dimension has no fixed limited, false

Variables

Variables are returned as an array structure with the following fields:

  • Name: the name of the dimension
  • Dimensions: array structure of all dimensions of this variable with the same structure as above.
  • Size: array with the size of the variable
  • Datatype: string with the corresponding octave data-type (see below)
  • Attributes: a array structure of attributes
  • FillValue: the NetCDF fill value of the variable. If the fill value is not defined, then this attribute is an empty array ([]).
  • DeflateLevel: the NetCDF deflate level between 0 (no compression) and 9 (maximum compression).
  • Shuffle: is true if the shuffle filter is activated to improve compression, otherwise false.
  • CheckSum: is set to "fletcher32", if check-sums are used, otherwise this field is not defined.

Attributes

Attributes are returned as an array structure with the following fields:

  • Name: the name of the attribute
  • Value: the value of the attribute (with the corresponding type)
  • Unlimited: true of the dimension has no fixed limited, false

Data-types

The following the the correspondence between the Octave and NetCDF data-types:

Octave typeNetCDF type
int8NC_BYTE
uint8NC_UBYTE
int16NC_SHORT
uint16NC_USHORT
int32NC_INT
uint32NC_UINT
int64NC_INT64
uint64NC_UINT64
singleNC_FLOAT
doubleNC_DOUBLE
charNC_CHAR

The output of ncinfo can be used to create a NetCDF file with the same meta-data using ncwriteschema.

Note: If there are no attributes (or variable or groups), the corresponding field is an empty matrix and not an empty struct array for compatibility with matlab.

See also: ncread,nccreate,ncwriteschema,ncdisp.

3.1.4 ncread

: x = ncread (filename, varname)
: x = ncread (filename, varname,start,count,stride)

Read the variable varname from the NetCDF file filename.

If start,count and stride are present, a subset of the variable is loaded. The parameter start contains the starting indices (1-based), count is the number of elements and stride the increment between two successive elements. These parameters are vectors whose length is equal to the number of dimension of the variable. Elements of count might be Inf which means that as many values as possible are loaded.

If the variable has the _FillValue attribute, then the corresponding values are replaced by NaN (except for characters). NetCDF attributes scale_factor (default 1) and add_offset (default 0) are use the transform the variable during the loading:

x = scale_factor * x_in_file + add_offset

The output data type matches the NetCDF datatype, except when the attributes _FillValue, add_offset or scale_factor are defined in which case the output is a array in double precision.

Note that values equal to the attribute missing_value are not replaced by NaN (for compatibility).

Example

Read the data from variable ’mydata’ in the file test.nc. 

 data  = ncread('test.nc','mydata');

See also: ncwrite,ncinfo,ncdisp.

3.1.5 ncreadatt

: val = ncreadatt(filename,varname,attname)

Return the attribute attname of the variable varname in the file filename.

Global attributes can be accessed by using "/" or the group name as varname. The type of attribute is mapped to the Octave data types. (see ncinfo).

Example

Read global attribute ’creation_date’ 

 d = ncreadatt('test.nc','/','creation_date')

Read atribute ’myattr’ assigned to variable mydata. 

 d = ncreadattr('test.nc', 'mydata', 'myattr');

See also: ncinfo,ncwriteatt.

3.1.6 ncwrite

: ncwrite (filename, varname, x)
: ncwrite (filename, varname, x, start, stride)

Write array x to the the variable varname in the NetCDF file filename.

The variable with the name varname and the appropriate dimension must already exist in the NetCDF file.

If start and stride are present, a subset of the variable is written. The parameter start contains the starting indices (1-based) and stride the increment between two successive elements. These parameters are vectors whose length is equal to the number of dimension of the variable.

If the variable has the _FillValue attribute, then the values equal to NaN are replaced by corresponding fill value NetCDF attributes scale_factor (default 1) and add_oddset (default 0) are use the transform the variable during writing:

x_in_file = (x - add_offset)/scale_factor

Example

Create a netcdf file with a variable of ’mydata’ and then write data to that variable. 

 nccreate('myfile.nc','mydata');
 ncwrite('myfile.nc','mydata', 101);

See also: ncread,nccreate.

3.1.7 ncwriteatt

: ncwriteatt(filename,varname,attname,val)

Defines the attribute attname of the variable varname in the file filename with the value val.

Global attributes can be defined by using "/" or the group name as varname. The type of value is mapped to the NetCDF data types. (see ncinfo).

Example

Create a netcdf4 format file with a variable mydata and assign an attribute "units" to it. 

 nccreate("myfile.nc", "mydata", "Format", "netcdf4");
 ncwriteatt("myfile.nc", "mydata", "Units", "K");

See also: ncinfo.

3.1.8 ncwriteschema

: ncwriteschema (filename, schema)

Create a NetCDF called filename with the dimensions, attributes, variables and groups given by the structure schema.

The variable schema has the same structure as the results of ncinfo. ncinfo and ncwriteschema can be used together to create a NetCDF using another file as a template:

Example

 schema = ncinfo("template.nc");
 # the new file should be named "new_file.nc"
 ncwriteschema("new_file.nc",schema);

Unused field in schema such as ChunkSize, Shuffle, DeflateLevel, FillValue, Checksum can be left-out if the corresponding feature is not used.

Dimensions are considered as limited if the field Unlimited is missing, unless the dimension length is Inf.

See also: ncinfo.

3.2 Low-level functions

3.2.1 Library Functions

3.2.1.1 netcdf.getChunkCache

: [size, nelems, preemption] = netcdf.getChunkCache()

Gets the default chunk cache settings in the HDF5 library.

3.2.1.2 netcdf.inqLibVers

: vers = netcdf.inqLibVers()

Returns the version of the NetCDF library as a string.

3.2.1.3 netcdf.setChunkCache

: netcdf.setChunkCache(size, nelems, preemption)

Sets the default chunk cache settings in the HDF5 library.

The settings applies to all files which are subsequently opened or created.

3.2.1.4 netcdf.setDefaultFormat

: old_format = netcdf.setDefaultFormat(format)

Sets the default format of the NetCDF library and returns the previous default format (as a numeric value).

format can be "format_classic", "format_64bit", "format_netcdf4" or "format_netcdf4_classic".

3.2.2 File Operations

3.2.2.1 netcdf.abort

: netcdf.abort(ncid)

Aborts all changes since the last time the dataset entered in define mode.

3.2.2.2 netcdf.close

: netcdf.close(ncid)

Close the NetCDF file with the id ncid.

3.2.2.3 netcdf.create

: ncid = netcdf.create(filename,mode)

Creates the file named filename in the mode mode.

mode can have the following values:

"clobber" (overwrite existing files),
"noclobber" (prevent to overwrite existing files)
"64bit_offset" (use the 64bit-offset format),
"netcdf4" (use the NetCDF4, i.e. HDF5 format) or
"share" (concurrent reading of the dataset).

mode can also be the numeric value return by netcdf.getConstant. In the later-case it can be combined with a bitwise-or.

Example

 mode = bitor(netcdf.getConstant("classic_model"), ...
 netcdf.getConstant("netcdf4"));
 ncid = netcdf.create("test.nc",mode);

See also: netcdf.open, netcdf.close.

3.2.2.4 netcdf.endDef

: netcdf.endDef (ncid)

Leaves define-mode of NetCDF file ncid.

3.2.2.5 netcdf.inq

: [ndims,nvars,ngatts,unlimdimid] = netcdf.inq(ncid)

Return informat about a netcdf file.

Return the number of dimension (ndims), the number of variables (nvars), the number of global attributes (ngatts) and the id of the unlimited dimension (unlimdimid).

If no unlimited dimension is declared -1 is returned.

For NetCDF4 files, one should use the function netcdf.inqUnlimDims as multiple unlimited dimension exists.

3.2.2.6 netcdf.inqFormat

: format = netcdf.inqFormat(ncid)

Return the NetCDF format of the dataset ncid.

Format might be one of the following "FORMAT_CLASSIC", "FORMAT_64BIT", "FORMAT_NETCDF4" or "FORMAT_NETCDF4_CLASSIC"

3.2.2.7 netcdf.inqGrps

: ncids = netcdf.inqGrps(ncid)

Return all groups ids in a NetCDF file.

See also: netcdf.inqGrps.

3.2.2.8 netcdf.inqUnlimDims

: unlimdimids = netcdf.inqUnlimDims(ncid)

Return the id of all unlimited dimensions of the NetCDF file ncid.

3.2.2.9 netcdf.open

: ncid = netcdf.open(filename,mode)

Opens the file named filename in the mode mode.

See also: netcdf.create, netcdf.close.

3.2.2.10 netcdf.reDef

: netcdf.reDef (ncid)

Enter define-mode of NetCDF file ncid.

3.2.2.11 netcdf.setFill

: old_mode = netcdf.setFill(ncid,fillmode)

Change the fill mode (fillmode) of the data set ncid.

fillmode can be either "fill" or "nofill".

The previous value of the fill mode is returned.

3.2.2.12 netcdf.sync

: netcdf.sync(ncid)

Writes all changes to the disk and leaves the file open.

3.2.3 Dimensions

3.2.3.1 netcdf.defDim

: dimid = netcdf.defDim(ncid,name,len)

Define the dimension with the name name and the length len in the dataset ncid.

The id of the dimension is returned.

3.2.3.2 netcdf.inqDim

: [name,length] = netcdf.inqDim(ncid,dimid)

Returns the name and length of a NetCDF dimension.

See also: netcdf.inqDimID.

3.2.3.3 netcdf.inqDimID

: dimid = netcdf.inqDimID(ncid,dimname)

Return the id of a NetCDF dimension.

See also: netcdf.inqDim.

3.2.3.4 netcdf.renameDim

: netcdf.renameDim(ncid,dimid,name)

Renames the dimension with the id dimid in the data set ncid. name is the new name of the dimension.

3.2.4 Groups

3.2.4.1 netcdf.defGrp

: new_ncid = netcdf.defGrp(ncid,name)

Define a group in a NetCDF file.

See also: netcdf.inqGrps.

3.2.4.2 netcdf.inqDimIDs

: dimids = netcdf.inqDimID(ncid)
: dimids = netcdf.inqDimID(ncid,include_parents)

Return the dimension ids defined in a NetCDF file. If include_parents is 1, the dimension ids of the parent group are also returned. Per default this is not the case (include_parents is 0).

See also: netcdf.inqDim.

3.2.4.3 netcdf.inqGrpFullNcid

: grp_ncid = netcdf.inqGrpFullNcid(ncid,name)

Return the group id based on the full group name.

See also: netcdf.inqGrpName.

3.2.4.4 netcdf.inqGrpName

: name = netcdf.inqGrpName(ncid)

Return group name in a NetCDF file.

See also: netcdf.inqGrps.

3.2.4.5 netcdf.inqGrpNameFull

: name = netcdf.inqGrpNameFull(ncid)

Return full name of group in NetCDF file.

See also: netcdf.inqGrpName.

3.2.4.6 netcdf.inqGrpParent

: parent_ncid = netcdf.inqGrpParent(ncid)

Return id of the parent group

See also: netcdf.inqGrpName.

3.2.4.7 netcdf.inqNcid

: grp_ncid = netcdf.inqNcid(ncid,name)

Return group id based on its name

See also: netcdf.inqGrpFullNcid.

3.2.4.8 netcdf.inqVarIDs

: varids = netcdf.inqVarID (ncid)

Return all variable ids.

This functions returns all variable ids in a NetCDF file or NetCDF group.

See also: netcdf.inqVarID.

3.2.5 Variables

3.2.5.1 netcdf.defVar

: varid = netcdf.defVar(ncid,name,xtype,dimids)

Defines a variable with the name name in the dataset ncid.

xtype can be "byte", "ubyte", "short", "ushort", "int", "uint", "int64", "uint64", "float", "double", "char" or the corresponding number as returned by netcdf.getConstant.

The parameter dimids define the ids of the dimension. For scalar this parameter is the empty array ([]).

The variable id is returned.

3.2.5.2 netcdf.defVarChunking

: netcdf.defVarChunking (ncid,varid,storage,chunkSizes)

Define the chunking settings of NetCDF variable varid.

If storage is the string "chunked", the variable is stored by chunk of the size chunkSizes.
If storage is the string "contiguous", the variable is stored in a contiguous way.

3.2.5.3 netcdf.defVarDeflate

: netcdf.defVarDeflate (ncid,varid,shuffle,deflate,deflate_level)

Define the compression settings NetCDF variable varid.

If deflate is true, then the variable is compressed.

The compression level deflate_level is an integer between 0 (no compression) and 9 (maximum compression).

3.2.5.4 netcdf.defVarFill

: netcdf.defVarFill(ncid,varid,no_fill,fillvalue)

Define the fill-value settings of the NetCDF variable varid.

If no_fill is false, then the values between no-contiguous writes are filled with the value fill_value.

This is disabled by setting no_fill to true.

3.2.5.5 netcdf.defVarFletcher32

: netcdf.defVarFletcher32(ncid,varid,checksum)

Defines the checksum settings of the variable with the id varid in the data set ncid.

If checksum is the string "FLETCHER32", then fletcher32 checksums will be turned on for this variable.

If checksum is "NOCHECKSUM", then checksums will be disabled.

3.2.5.6 netcdf.getVar

: data = netcdf.getVar (ncid,varid)
: data = netcdf.getVar (ncid,varid,start)
: data = netcdf.getVar (ncid,varid,start,count)
: data = netcdf.getVar (ncid,varid,start,count,stride)

Get the data from a NetCDF variable. # The data data is loaded from the variable varid of the NetCDF file ncid.

start is the start index of each dimension (0-based and defaults to a vector of zeros),

count is the number of elements of to be written along each dimension (default all elements)

stride is the sampling interval.

3.2.5.7 netcdf.inqVar

: [name,nctype,dimids,nattr] = netcdf.inqVar (ncid,varid)

Inquires information about a NetCDF variable.

This functions returns the name, the NetCDF type nctype, an array of dimension ids

dimids and the number of attributes nattr of the NetCDF variable.

nctype in an integer corresponding NetCDF constants.

See also: netcdf.inqVarID,netcdf.getConstant.

3.2.5.8 netcdf.inqVarChunking

: [storage,chunkSizes] = netcdf.inqVarChunking (ncid,varid)

Determines the chunking settings of NetCDF variable varid.

If storage is the string "chunked", the variable is stored by chunk of the size chunkSizes.
If storage is the string "contiguous", the variable is stored in a contiguous way.

3.2.5.9 netcdf.inqVarDeflate

: [shuffle,deflate,deflate_level] = netcdf.inqVarDeflate (ncid,varid)

Determines the compression settings NetCDF variable varid.

If deflate is true, then the variable is compressed.

The compression level deflate_level is an integer between 0 (no compression) and 9 (maximum compression).

3.2.5.10 netcdf.inqVarFill

: [no_fill,fillvalue] = netcdf.inqVarFill(ncid,varid)

Determines the fill-value settings of the NetCDF variable varid.

If no_fill is false, then the values between no-contiguous writes are filled with the value fill_value.

This is disabled by setting no_fill to true.

3.2.5.11 netcdf.inqVarFletcher32

: checksum = netcdf.inqVarFletcher32(ncid,varid)

Determines the checksum settings of the variable with the id varid in the data set ncid.

If fletcher32 checksums is turned on for this variable, then checksum is the string "FLETCHER32". Otherwise it is the string "NOCHECKSUM".

3.2.5.12 netcdf.inqVarID

: varid = netcdf.inqVarID (ncid,name)

Return the id of a variable based on its name.

See also: netcdf.defVar, netcdf.inqVarIDs.

3.2.5.13 netcdf.putVar

: netcdf.putVar (ncid,varid,data)
: netcdf.putVar (ncid,varid,start,data)
: netcdf.putVar (ncid,varid,start,count,data)
: netcdf.putVar (ncid,varid,start,count,stride,data)

Put data in a NetCDF variable.

The data data is stored in the variable varid of the NetCDF file ncid.

start is the start index of each dimension (0-based and defaults to a vector of zeros),

count is the number of elements of to be written along each dimension (default all elements)

stride is the sampling interval.

3.2.5.14 netcdf.renameVar

: netcdf.renameVar(ncid,varid,name)

Renames the variable with the id varid in the data set ncid. name is the new name of the variable.

3.2.6 Attributes

3.2.6.1 netcdf.copyAtt

: netcdf.copyAtt (ncid,varid,name,ncid_out,varid_out)

Copies the attribute named old_name of the variable varid in the data set ncid to the variable varid_out in the data set ncid_out.

To copy a global attribute use netcdf.getConstant("global") for varid or varid_out.

See also: netcdf.getAtt,netcdf.getConstant.

3.2.6.2 netcdf.delAtt

: netcdf.delAtt(ncid,varid,name)

Deletes the attribute named name of the variable varid in the data set ncid.

To delete a global attribute use netcdf.getConstant("global") for varid.

See also: netcdf.defAtt,netcdf.getConstant.

3.2.6.3 netcdf.getAtt

: data = netcdf.getAtt (ncid,varid,name)

Get the value of a NetCDF attribute.

This function returns the value of the attribute called name of the variable varid in the NetCDF file ncid.

For global attributes varid can be netcdf.getConstant("global").

See also: netcdf.putAtt.

3.2.6.4 netcdf.inqAtt

: [xtype,len] = netcdf.inqAtt(ncid,varid,name)

Get attribute type and length.

See also: netcdf.inqAttName.

3.2.6.5 netcdf.inqAttID

: attnum = netcdf.inqAttID(ncid,varid,attname)

Return the attribute id attnum of the attribute named attname of the variable varid in the dataset ncid.

For global attributes varid can be netcdf.getConstant("global").

See also: netcdf.inqAttName.

3.2.6.6 netcdf.inqAttName

: name = netcdf.inqAttName (ncid,varid,attnum)

Get the name of a NetCDF attribute.

This function returns the name of the attribute with the id attnum of the variable varid in the NetCDF file ncid.

For global attributes varid can be netcdf.getConstant("global").

See also: netcdf.inqAttName.

3.2.6.7 netcdf.putAtt

: netcdf.putAtt (ncid,varid,name,data)

Defines a NetCDF attribute.

This function defines the attribute called name of the variable varid in the NetCDF file ncid. The value of the attribute will be data.

For global attributes varid can be netcdf.getConstant("global").

See also: netcdf.getAtt.

3.2.6.8 netcdf.renameAtt

: netcdf.renameAtt(ncid,varid,old_name,new_name)

Renames the attribute named old_name of the variable varid in the data set ncid.

new_name is the new name of the attribute.

To rename a global attribute use netcdf.getConstant("global") for varid.

See also: netcdf.copyAtt,netcdf.getConstant.

3.2.7 User-Defined Types

3.2.7.1 netcdf.defVlen

: varid = netcdf.defVlen(ncid,typename,basetype)

Defines a NC_VLEN variable length array type with the type name typename and a base datatype of basetype in the dataset ncid.

basetype can be "byte", "ubyte", "short", "ushort", "int", "uint", "int64", "uint64", "float", "double", "char" or the corresponding number as returned by netcdf.getConstant.

The new data type id is returned.

3.2.7.2 netcdf.inqUserType

: [typename, bytesize, basetypeid, numfields, classid] = netcdf.inqUserType(ncid,typeid)

Provide information on a user defined type typeid in the dataset ncid.

The function returns the typename, bytesize, base type id, number of fields and class identifier of the type.

3.2.7.3 netcdf.inqVlen

: [typename, bytesize, basetypeid] = netcdf.inqVlen(ncid,typeid)

Provide information on a NC_VLEN variable length array type typeid in the dataset ncid.

The function returns the typename, bytesize, and base type id.

3.2.8 Utilities

3.2.8.1 netcdf.getConstant

: value = netcdf.getConstant(name)

Returns the value of a NetCDF constant called name.

See also: netcdf.getConstantNames.

3.2.8.2 netcdf.getConstantNames

: value = netcdf.getConstantNames()

Returns a list of all constant names.

3.3 Test function

3.3.1 test_netcdf

: test_netcdf

Function to do a basic test of the netcdf interface

Appendix A GNU General Public License

Version 3, 29 June 2007 
Copyright © 2007 Free Software Foundation, Inc. http://fsf.org/

Everyone is permitted to copy and distribute verbatim copies of this
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Preamble

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When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for them if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs, and that you know you can do these things.

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For example, if you distribute copies of such a program, whether gratis or for a fee, you must pass on to the recipients the same freedoms that you received. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights.

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    3. You must license the entire work, as a whole, under this License to anyone who comes into possession of a copy. This License will therefore apply, along with any applicable section 7 additional terms, to the whole of the work, and all its parts, regardless of how they are packaged. This License gives no permission to license the work in any other way, but it does not invalidate such permission if you have separately received it.
    4. If the work has interactive user interfaces, each must display Appropriate Legal Notices; however, if the Program has interactive interfaces that do not display Appropriate Legal Notices, your work need not make them do so.

    A compilation of a covered work with other separate and independent works, which are not by their nature extensions of the covered work, and which are not combined with it such as to form a larger program, in or on a volume of a storage or distribution medium, is called an “aggregate” if the compilation and its resulting copyright are not used to limit the access or legal rights of the compilation’s users beyond what the individual works permit. Inclusion of a covered work in an aggregate does not cause this License to apply to the other parts of the aggregate.

  7. Conveying Non-Source Forms.

    You may convey a covered work in object code form under the terms of sections 4 and 5, provided that you also convey the machine-readable Corresponding Source under the terms of this License, in one of these ways:

    1. Convey the object code in, or embodied in, a physical product (including a physical distribution medium), accompanied by the Corresponding Source fixed on a durable physical medium customarily used for software interchange.
    2. Convey the object code in, or embodied in, a physical product (including a physical distribution medium), accompanied by a written offer, valid for at least three years and valid for as long as you offer spare parts or customer support for that product model, to give anyone who possesses the object code either (1) a copy of the Corresponding Source for all the software in the product that is covered by this License, on a durable physical medium customarily used for software interchange, for a price no more than your reasonable cost of physically performing this conveying of source, or (2) access to copy the Corresponding Source from a network server at no charge.
    3. Convey individual copies of the object code with a copy of the written offer to provide the Corresponding Source. This alternative is allowed only occasionally and noncommercially, and only if you received the object code with such an offer, in accord with subsection 6b.
    4. Convey the object code by offering access from a designated place (gratis or for a charge), and offer equivalent access to the Corresponding Source in the same way through the same place at no further charge. You need not require recipients to copy the Corresponding Source along with the object code. If the place to copy the object code is a network server, the Corresponding Source may be on a different server (operated by you or a third party) that supports equivalent copying facilities, provided you maintain clear directions next to the object code saying where to find the Corresponding Source. Regardless of what server hosts the Corresponding Source, you remain obligated to ensure that it is available for as long as needed to satisfy these requirements.
    5. Convey the object code using peer-to-peer transmission, provided you inform other peers where the object code and Corresponding Source of the work are being offered to the general public at no charge under subsection 6d.

    A separable portion of the object code, whose source code is excluded from the Corresponding Source as a System Library, need not be included in conveying the object code work.

    A “User Product” is either (1) a “consumer product”, which means any tangible personal property which is normally used for personal, family, or household purposes, or (2) anything designed or sold for incorporation into a dwelling. In determining whether a product is a consumer product, doubtful cases shall be resolved in favor of coverage. For a particular product received by a particular user, “normally used” refers to a typical or common use of that class of product, regardless of the status of the particular user or of the way in which the particular user actually uses, or expects or is expected to use, the product. A product is a consumer product regardless of whether the product has substantial commercial, industrial or non-consumer uses, unless such uses represent the only significant mode of use of the product.

    “Installation Information” for a User Product means any methods, procedures, authorization keys, or other information required to install and execute modified versions of a covered work in that User Product from a modified version of its Corresponding Source. The information must suffice to ensure that the continued functioning of the modified object code is in no case prevented or interfered with solely because modification has been made.

    If you convey an object code work under this section in, or with, or specifically for use in, a User Product, and the conveying occurs as part of a transaction in which the right of possession and use of the User Product is transferred to the recipient in perpetuity or for a fixed term (regardless of how the transaction is characterized), the Corresponding Source conveyed under this section must be accompanied by the Installation Information. But this requirement does not apply if neither you nor any third party retains the ability to install modified object code on the User Product (for example, the work has been installed in ROM).

    The requirement to provide Installation Information does not include a requirement to continue to provide support service, warranty, or updates for a work that has been modified or installed by the recipient, or for the User Product in which it has been modified or installed. Access to a network may be denied when the modification itself materially and adversely affects the operation of the network or violates the rules and protocols for communication across the network.

    Corresponding Source conveyed, and Installation Information provided, in accord with this section must be in a format that is publicly documented (and with an implementation available to the public in source code form), and must require no special password or key for unpacking, reading or copying.

  8. Additional Terms.

    “Additional permissions” are terms that supplement the terms of this License by making exceptions from one or more of its conditions. Additional permissions that are applicable to the entire Program shall be treated as though they were included in this License, to the extent that they are valid under applicable law. If additional permissions apply only to part of the Program, that part may be used separately under those permissions, but the entire Program remains governed by this License without regard to the additional permissions.

    When you convey a copy of a covered work, you may at your option remove any additional permissions from that copy, or from any part of it. (Additional permissions may be written to require their own removal in certain cases when you modify the work.) You may place additional permissions on material, added by you to a covered work, for which you have or can give appropriate copyright permission.

    Notwithstanding any other provision of this License, for material you add to a covered work, you may (if authorized by the copyright holders of that material) supplement the terms of this License with terms:

    1. Disclaiming warranty or limiting liability differently from the terms of sections 15 and 16 of this License; or
    2. Requiring preservation of specified reasonable legal notices or author attributions in that material or in the Appropriate Legal Notices displayed by works containing it; or
    3. Prohibiting misrepresentation of the origin of that material, or requiring that modified versions of such material be marked in reasonable ways as different from the original version; or
    4. Limiting the use for publicity purposes of names of licensors or authors of the material; or
    5. Declining to grant rights under trademark law for use of some trade names, trademarks, or service marks; or
    6. Requiring indemnification of licensors and authors of that material by anyone who conveys the material (or modified versions of it) with contractual assumptions of liability to the recipient, for any liability that these contractual assumptions directly impose on those licensors and authors.

    All other non-permissive additional terms are considered “further restrictions” within the meaning of section 10. If the Program as you received it, or any part of it, contains a notice stating that it is governed by this License along with a term that is a further restriction, you may remove that term. If a license document contains a further restriction but permits relicensing or conveying under this License, you may add to a covered work material governed by the terms of that license document, provided that the further restriction does not survive such relicensing or conveying.

    If you add terms to a covered work in accord with this section, you must place, in the relevant source files, a statement of the additional terms that apply to those files, or a notice indicating where to find the applicable terms.

    Additional terms, permissive or non-permissive, may be stated in the form of a separately written license, or stated as exceptions; the above requirements apply either way.

  9. Termination.

    You may not propagate or modify a covered work except as expressly provided under this License. Any attempt otherwise to propagate or modify it is void, and will automatically terminate your rights under this License (including any patent licenses granted under the third paragraph of section 11).

    However, if you cease all violation of this License, then your license from a particular copyright holder is reinstated (a) provisionally, unless and until the copyright holder explicitly and finally terminates your license, and (b) permanently, if the copyright holder fails to notify you of the violation by some reasonable means prior to 60 days after the cessation.

    Moreover, your license from a particular copyright holder is reinstated permanently if the copyright holder notifies you of the violation by some reasonable means, this is the first time you have received notice of violation of this License (for any work) from that copyright holder, and you cure the violation prior to 30 days after your receipt of the notice.

    Termination of your rights under this section does not terminate the licenses of parties who have received copies or rights from you under this License. If your rights have been terminated and not permanently reinstated, you do not qualify to receive new licenses for the same material under section 10.

  10. Acceptance Not Required for Having Copies.

    You are not required to accept this License in order to receive or run a copy of the Program. Ancillary propagation of a covered work occurring solely as a consequence of using peer-to-peer transmission to receive a copy likewise does not require acceptance. However, nothing other than this License grants you permission to propagate or modify any covered work. These actions infringe copyright if you do not accept this License. Therefore, by modifying or propagating a covered work, you indicate your acceptance of this License to do so.

  11. Automatic Licensing of Downstream Recipients.

    Each time you convey a covered work, the recipient automatically receives a license from the original licensors, to run, modify and propagate that work, subject to this License. You are not responsible for enforcing compliance by third parties with this License.

    An “entity transaction” is a transaction transferring control of an organization, or substantially all assets of one, or subdividing an organization, or merging organizations. If propagation of a covered work results from an entity transaction, each party to that transaction who receives a copy of the work also receives whatever licenses to the work the party’s predecessor in interest had or could give under the previous paragraph, plus a right to possession of the Corresponding Source of the work from the predecessor in interest, if the predecessor has it or can get it with reasonable efforts.

    You may not impose any further restrictions on the exercise of the rights granted or affirmed under this License. For example, you may not impose a license fee, royalty, or other charge for exercise of rights granted under this License, and you may not initiate litigation (including a cross-claim or counterclaim in a lawsuit) alleging that any patent claim is infringed by making, using, selling, offering for sale, or importing the Program or any portion of it.

  12. Patents.

    A “contributor” is a copyright holder who authorizes use under this License of the Program or a work on which the Program is based. The work thus licensed is called the contributor’s “contributor version”.

    A contributor’s “essential patent claims” are all patent claims owned or controlled by the contributor, whether already acquired or hereafter acquired, that would be infringed by some manner, permitted by this License, of making, using, or selling its contributor version, but do not include claims that would be infringed only as a consequence of further modification of the contributor version. For purposes of this definition, “control” includes the right to grant patent sublicenses in a manner consistent with the requirements of this License.

    Each contributor grants you a non-exclusive, worldwide, royalty-free patent license under the contributor’s essential patent claims, to make, use, sell, offer for sale, import and otherwise run, modify and propagate the contents of its contributor version.

    In the following three paragraphs, a “patent license” is any express agreement or commitment, however denominated, not to enforce a patent (such as an express permission to practice a patent or covenant not to sue for patent infringement). To “grant” such a patent license to a party means to make such an agreement or commitment not to enforce a patent against the party.

    If you convey a covered work, knowingly relying on a patent license, and the Corresponding Source of the work is not available for anyone to copy, free of charge and under the terms of this License, through a publicly available network server or other readily accessible means, then you must either (1) cause the Corresponding Source to be so available, or (2) arrange to deprive yourself of the benefit of the patent license for this particular work, or (3) arrange, in a manner consistent with the requirements of this License, to extend the patent license to downstream recipients. “Knowingly relying” means you have actual knowledge that, but for the patent license, your conveying the covered work in a country, or your recipient’s use of the covered work in a country, would infringe one or more identifiable patents in that country that you have reason to believe are valid.

    If, pursuant to or in connection with a single transaction or arrangement, you convey, or propagate by procuring conveyance of, a covered work, and grant a patent license to some of the parties receiving the covered work authorizing them to use, propagate, modify or convey a specific copy of the covered work, then the patent license you grant is automatically extended to all recipients of the covered work and works based on it.

    A patent license is “discriminatory” if it does not include within the scope of its coverage, prohibits the exercise of, or is conditioned on the non-exercise of one or more of the rights that are specifically granted under this License. You may not convey a covered work if you are a party to an arrangement with a third party that is in the business of distributing software, under which you make payment to the third party based on the extent of your activity of conveying the work, and under which the third party grants, to any of the parties who would receive the covered work from you, a discriminatory patent license (a) in connection with copies of the covered work conveyed by you (or copies made from those copies), or (b) primarily for and in connection with specific products or compilations that contain the covered work, unless you entered into that arrangement, or that patent license was granted, prior to 28 March 2007.

    Nothing in this License shall be construed as excluding or limiting any implied license or other defenses to infringement that may otherwise be available to you under applicable patent law.

  13. No Surrender of Others’ Freedom.

    If conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot convey a covered work so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not convey it at all. For example, if you agree to terms that obligate you to collect a royalty for further conveying from those to whom you convey the Program, the only way you could satisfy both those terms and this License would be to refrain entirely from conveying the Program.

  14. Use with the GNU Affero General Public License.

    Notwithstanding any other provision of this License, you have permission to link or combine any covered work with a work licensed under version 3 of the GNU Affero General Public License into a single combined work, and to convey the resulting work. The terms of this License will continue to apply to the part which is the covered work, but the special requirements of the GNU Affero General Public License, section 13, concerning interaction through a network will apply to the combination as such.

  15. Revised Versions of this License.

    The Free Software Foundation may publish revised and/or new versions of the GNU General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns.

    Each version is given a distinguishing version number. If the Program specifies that a certain numbered version of the GNU General Public License “or any later version” applies to it, you have the option of following the terms and conditions either of that numbered version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of the GNU General Public License, you may choose any version ever published by the Free Software Foundation.

    If the Program specifies that a proxy can decide which future versions of the GNU General Public License can be used, that proxy’s public statement of acceptance of a version permanently authorizes you to choose that version for the Program.

    Later license versions may give you additional or different permissions. However, no additional obligations are imposed on any author or copyright holder as a result of your choosing to follow a later version.

  16. Disclaimer of Warranty.

    THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM “AS IS” WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.

  17. Limitation of Liability.

    IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.

  18. Interpretation of Sections 15 and 16.

    If the disclaimer of warranty and limitation of liability provided above cannot be given local legal effect according to their terms, reviewing courts shall apply local law that most closely approximates an absolute waiver of all civil liability in connection with the Program, unless a warranty or assumption of liability accompanies a copy of the Program in return for a fee.

END OF TERMS AND CONDITIONS

How to Apply These Terms to Your New Programs

If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms.

To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively state the exclusion of warranty; and each file should have at least the “copyright” line and a pointer to where the full notice is found. 

one line to give the program's name and a brief idea of what it does.  
Copyright (C) year name of author

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at
your option) any later version.

This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see http://www.gnu.org/licenses/.

Also add information on how to contact you by electronic and paper mail.

If the program does terminal interaction, make it output a short notice like this when it starts in an interactive mode: 

program Copyright (C) year name of author 
This program comes with ABSOLUTELY NO WARRANTY; for details type ‘show w’.
This is free software, and you are welcome to redistribute it
under certain conditions; type ‘show c’ for details.

The hypothetical commands ‘show w’ and ‘show c’ should show the appropriate parts of the General Public License. Of course, your program’s commands might be different; for a GUI interface, you would use an “about box”.

You should also get your employer (if you work as a programmer) or school, if any, to sign a “copyright disclaimer” for the program, if necessary. For more information on this, and how to apply and follow the GNU GPL, see http://www.gnu.org/licenses/.

The GNU General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Lesser General Public License instead of this License. But first, please read http://www.gnu.org/philosophy/why-not-lgpl.html.

Index

Jump to:   A   B   C   D   E   F   G   H   I   L   N   O   P   R   S   T   W  
Index EntrySection
A
abortLow-level functions - File Operations
B
Basic Usage OverviewBasic Usage Overview
C
closeLow-level functions - File Operations
copyAttLow-level functions - Attributes
copyrightCopying
createLow-level functions - File Operations
D
defDimLow-level functions - Dimensions
defGrpLow-level functions - Groups
defVarLow-level functions - Variables
defVarChunkingLow-level functions - Variables
defVarDeflateLow-level functions - Variables
defVarFillLow-level functions - Variables
defVarFletcher32Low-level functions - Variables
defVlenLow-level functions - User-Defined Types
delAttLow-level functions - Attributes
E
endDefLow-level functions - File Operations
F
Function ReferenceFunction Reference
G
getAttLow-level functions - Attributes
getChunkCacheLow-level functions - Library Functions
getConstantLow-level functions - Utilities
getConstantNamesLow-level functions - Utilities
getVarLow-level functions - Variables
H
High level functionalityBasic Usage Overview
High-level functionsHigh-level functions
I
inqLow-level functions - File Operations
inqAttLow-level functions - Attributes
inqAttIDLow-level functions - Attributes
inqAttNameLow-level functions - Attributes
inqDimLow-level functions - Dimensions
inqDimIDLow-level functions - Dimensions
inqDimIDsLow-level functions - Groups
inqFormatLow-level functions - File Operations
inqGrpFullNcidLow-level functions - Groups
inqGrpNameLow-level functions - Groups
inqGrpNameFullLow-level functions - Groups
inqGrpParentLow-level functions - Groups
inqGrpsLow-level functions - File Operations
inqLibVersLow-level functions - Library Functions
inqNcidLow-level functions - Groups
inqUnlimDimsLow-level functions - File Operations
inqUserTypeLow-level functions - User-Defined Types
inqVarLow-level functions - Variables
inqVarChunkingLow-level functions - Variables
inqVarDeflateLow-level functions - Variables
inqVarFillLow-level functions - Variables
inqVarFletcher32Low-level functions - Variables
inqVarIDLow-level functions - Variables
inqVarIDsLow-level functions - Groups
inqVlenLow-level functions - User-Defined Types
Installing and loadingInstalling and loading
L
LoadingInstalling and loading
Low level functionalityBasic Usage Overview
Low-level functionsLow-level functions
Low-level functions - AttributesLow-level functions - Attributes
Low-level functions - DimensionsLow-level functions - Dimensions
Low-level functions - File OperationsLow-level functions - File Operations
Low-level functions - GroupsLow-level functions - Groups
Low-level functions - Library FunctionsLow-level functions - Library Functions
Low-level functions - User-Defined TypesLow-level functions - User-Defined Types
Low-level functions - UtilitiesLow-level functions - Utilities
Low-level functions - VariablesLow-level functions - Variables
N
nccreateHigh-level functions
ncdispHigh-level functions
ncinfoHigh-level functions
ncreadHigh-level functions
ncreadattHigh-level functions
ncwriteHigh-level functions
ncwriteattHigh-level functions
ncwriteschemaHigh-level functions
O
Off-line installInstalling and loading
Online installInstalling and loading
openLow-level functions - File Operations
P
putAttLow-level functions - Attributes
putVarLow-level functions - Variables
R
reDefLow-level functions - File Operations
renameAttLow-level functions - Attributes
renameDimLow-level functions - Dimensions
renameVarLow-level functions - Variables
S
setChunkCacheLow-level functions - Library Functions
setDefaultFormatLow-level functions - Library Functions
setFillLow-level functions - File Operations
syncLow-level functions - File Operations
T
Test functionTest function
test_netcdfTest function
W
warrantyCopying
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Octave @c For manually generating the documentation use @c LANGUAGE=en makeinfo --html --no-split octave-netcdf.texi @c %*** Start of HEADER @setfilename octave-netcdf.info @settitle Octave NetCDF - A NetCDF interface for Octave @afourpaper @paragraphindent 0 @finalout @set COPYRIGHT_DATE 2022-@value{YEAR} @c @afourwide @c %*** End of the HEADER @include version.texi @include macros.texi @c %*** Start of TITLEPAGE @titlepage @c @center @image{octave-netcdf-logo} @vskip 0pt plus 1filll @title Octave NetCDF Toolkit @value{VERSION} @subtitle NetCDF functions for @acronym{GNU} Octave. @author John Donoghue @page @vskip 0pt plus 1filll Copyright @copyright{} @value{COPYRIGHT_DATE} John Donoghue Permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and this permission notice are preserved on all copies. Permission is granted to copy and distribute modified versions of this manual under the conditions for verbatim copying, provided that the entire resulting derived work is distributed under the terms of a permission notice identical to this one. Permission is granted to copy and distribute translations of this manual into another language, under the same conditions as for modified versions. @page @heading Distribution The @acronym{GNU} Octave NetCDF package is @dfn{free} software. Free software is a matter of the users' freedom to run, copy, distribute, study, change and improve the software. This means that everyone is free to use it and free to redistribute it on certain conditions. The @acronym{GNU} Octave NetCDF package is not, however, in the public domain. It is copyrighted and there are restrictions on its distribution, but the restrictions are designed to ensure that others will have the same freedom to use and redistribute Octave that you have. The precise conditions can be found in the @acronym{GNU} General Public License that comes with the @acronym{GNU} Octave NetCDF package and that also appears in @ref{Copying}. To download a copy of the @acronym{GNU} Octave NetCDF package, please visit @url{https://gnu-octave.github.io/octave-netcdf/}. @end titlepage @c %*** End of TITLEPAGE @dircategory Math @direntry * NetCDF for Octave: (netcdf). NetCDF Toolbox for Octave @end direntry @c %*** Start of BODY @contents @ifnottex @node Top @top Introduction The Octave NetCDF toolkit is a set of NetCDF routines for GNU Octave @end ifnottex @menu * Installing and loading:: Installing and loading the toolkit * Basic Usage Overview:: Basic Usage Overview * Function Reference:: Toolkit functions * Copying:: Copying * Index:: Index @end menu @c ------------------------------------------------------------------------- @node Installing and loading @chapter Installing and loading @cindex Installing and loading The toolkit must be installed and then loaded to be used. It can be installed in @acronym{GNU} Octave directly from the website, or can be installed in an off-line mode via a downloaded tarball. The toolkit has a dependency on the netcdf library (@url{https://www.unidata.ucar.edu/software/netcdf/}), so it must be installed in order to successfully install the toolkit. The toolkit must be then be loaded once per each @acronym{GNU} Octave session in order to use its functionality. @section Online Direct install @cindex Online install With an internet connection available, the package can be installed from octave-forge using the following command within @acronym{GNU} Octave: @example pkg install -forge netcdf @end example The latest released version of the toolkit will be downloaded and installed. @section Off-line install @cindex Off-line install With the toolkit package already downloaded, and in the current directory when running @acronym{GNU} Octave, the package can be installed using the following command within @acronym{GNU} Octave: @example pkg install netcdf-@value{VERSION}.tar.gz @end example @section Loading @cindex Loading Regardless of the method of installing the toolkit, in order to use its functions, the toolkit must be loaded using the pkg load command: @example pkg load netcdf @end example The toolkit must be loaded on each @acronym{GNU} Octave session. @c ------------------------------------------------------------------------- @node Basic Usage Overview @chapter Basic Usage Overview @cindex Basic Usage Overview The toolkit provides high and level functionality for reading and writing NetCDF format files. @section High level functionality @cindex High level functionality The toolkit provides the following high level functions: @itemize @bullet @item nccreate @item ncdisp @item ncinfo @item ncreadatt @item ncread @item ncwriteatt @item ncwrite @item ncwriteschema @end itemize @section Low level functionality @cindex Low level functionality The package aims to implement the netcdf interface of MATLAB in GNU Octave, however @acronym{GNU} Octave does not support the import function but the functions are available as netcdf.functionname @c ------------------------------------------------------------------------- @node Function Reference @chapter Function Reference @cindex Function Reference The functions currently available in the toolkit are described below; @include functions.texi @c ------------------------------------------------------------------------- @include gpl.texi @c ------------------------------------------------------------------------- @node Index @unnumbered Index @printindex cp @bye netcdf-1.0.20/doc/version.texi0000644000000000000000000000015315205072111013101 0ustar00@c autogenerated from Makefile @set VERSION 1.0.20 @set PACKAGE netcdf @set DATE 2026-05-25 @set YEAR 2026 netcdf-1.0.20/inst/0000755000000000000000000000000015205072111010732 5ustar00netcdf-1.0.20/inst/+netcdf/0000755000000000000000000000000015205072111012250 5ustar00netcdf-1.0.20/inst/+netcdf/abort.m0000644000000000000000000000177215205072111013544 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.abort(@var{ncid}) ## Aborts all changes since the last time the dataset entered in define mode. ## @end deftypefn function varargout = abort(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_abort (varargin{:}); else netcdf_abort (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/close.m0000644000000000000000000000173515205072111013541 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.close(@var{ncid}) ## Close the NetCDF file with the id @var{ncid}. ## @end deftypefn function varargout = close(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_close (varargin{:}); else netcdf_close (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/copyAtt.m0000644000000000000000000000244715205072111014060 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.copyAtt (@var{ncid},@var{varid},@var{name},@var{ncid_out},@var{varid_out}) ## Copies the attribute named @var{old_name} of the variable @var{varid} in the data set @var{ncid} ## to the variable @var{varid_out} in the data set @var{ncid_out}. ## ## To copy a global attribute use netcdf.getConstant("global") for @var{varid} or @var{varid_out}. ## @seealso{netcdf.getAtt,netcdf.getConstant} ## @end deftypefn function varargout = copyAtt(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_copyAtt (varargin{:}); else netcdf_copyAtt (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/create.m0000644000000000000000000000333315205072111013673 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{ncid} =} netcdf.create(@var{filename},@var{mode}) ## Creates the file named @var{filename} in the mode @var{mode}. ## ## @var{mode} can have the following values: ## @table @asis ## @item "clobber" (overwrite existing files), ## @item "noclobber" (prevent to overwrite existing files) ## @item "64bit_offset" (use the 64bit-offset format), ## @item "netcdf4" (use the NetCDF4, i.e. HDF5 format) or ## @item "share" (concurrent reading of the dataset). ## @end table ## @var{mode} can also be the numeric value return by netcdf.getConstant. In the later-case it can be combined with a bitwise-or. ## @end deftypefn ## @subsubheading Example ## @example ## mode = bitor(netcdf.getConstant("classic_model"), ... ## netcdf.getConstant("netcdf4")); ## ncid = netcdf.create("test.nc",mode); ## @end example ## @seealso {netcdf.open, netcdf.close} function varargout = create(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_create (varargin{:}); else netcdf_create (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defDim.m0000644000000000000000000000214215205072111013615 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{dimid} =} netcdf.defDim(@var{ncid},@var{name},@var{len}) ## Define the dimension with the name @var{name} and the length @var{len} in the dataset @var{ncid}. ## ## The id of the dimension is returned. ## @end deftypefn function varargout = defDim(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defDim (varargin{:}); else netcdf_defDim (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defGrp.m0000644000000000000000000000201215205072111013630 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{new_ncid} =} netcdf.defGrp(@var{ncid},@var{name}) ## Define a group in a NetCDF file. ## @seealso{netcdf.inqGrps} ## @end deftypefn function varargout = defGrp(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defGrp (varargin{:}); else netcdf_defGrp (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defVar.m0000644000000000000000000000260015205072111013633 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{varid} = } netcdf.defVar(@var{ncid},@var{name},@var{xtype},@var{dimids}) ## Defines a variable with the name @var{name} in the dataset @var{ncid}. ## ## @var{xtype} can be "byte", "ubyte", "short", "ushort", "int", "uint", "int64", "uint64", ## "float", "double", "char" or the corresponding number as returned by netcdf.getConstant. ## ## The parameter @var{dimids} define the ids of the dimension. For scalar this parameter is the empty array ([]). ## ## The variable id is returned. ## @end deftypefn function varargout = defVar(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defVar (varargin{:}); else netcdf_defVar (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defVarChunking.m0000644000000000000000000000241015205072111015321 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.defVarChunking (@var{ncid},@var{varid},@var{storage},@var{chunkSizes}) ## Define the chunking settings of NetCDF variable @var{varid}. ## ## If @var{storage} is the string "chunked", the variable is stored by chunk of the size @var{chunkSizes}.@* ## If @var{storage} is the string "contiguous", the variable is stored in a contiguous way. ## @end deftypefn function varargout = defVarChunking(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defVarChunking (varargin{:}); else netcdf_defVarChunking (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defVarDeflate.m0000644000000000000000000000240015205072111015116 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.defVarDeflate (@var{ncid},@var{varid},@var{shuffle},@var{deflate},@var{deflate_level}) ## Define the compression settings NetCDF variable @var{varid}. ## ## If @var{deflate} is true, then the variable is compressed. ## ## The compression level @var{deflate_level} is an integer between 0 (no compression) and 9 (maximum compression). ## @end deftypefn function varargout = defVarDeflate(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defVarDeflate (varargin{:}); else netcdf_defVarDeflate (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defVarFill.m0000644000000000000000000000234615205072111014451 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.defVarFill(@var{ncid},@var{varid},@var{no_fill},@var{fillvalue}) ## Define the fill-value settings of the NetCDF variable @var{varid}. ## ## If @var{no_fill} is false, then the values between no-contiguous writes are filled with the ## value @var{fill_value}. ## ## This is disabled by setting @var{no_fill} to true. ## @end deftypefn function varargout = defVarFill(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defVarFill (varargin{:}); else netcdf_defVarFill (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defVarFletcher32.m0000644000000000000000000000242615205072111015463 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.defVarFletcher32(@var{ncid},@var{varid},@var{checksum}) ## Defines the checksum settings of the variable with the id @var{varid} in the data set @var{ncid}. ## ## If @var{checksum} is the string "FLETCHER32", then fletcher32 checksums will be turned on for this variable. ## ## If @var{checksum} is "NOCHECKSUM", then checksums will be disabled. ## @end deftypefn function varargout = defVarFletcher32(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defVarFletcher32 (varargin{:}); else netcdf_defVarFletcher32 (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/defVlen.m0000644000000000000000000000253515205072111014016 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{varid} = } netcdf.defVlen(@var{ncid},@var{typename},@var{basetype}) ## Defines a NC_VLEN variable length array type with the type name @var{typename} and a base ## datatype of @var{basetype} in the dataset @var{ncid}. ## ## @var{basetype} can be "byte", "ubyte", "short", "ushort", "int", "uint", "int64", "uint64", ## "float", "double", "char" or the corresponding number as returned by netcdf.getConstant. ## ## The new data type id is returned. ## @end deftypefn function varargout = defVlen(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_defVlen (varargin{:}); else netcdf_defVlen (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/delAtt.m0000644000000000000000000000225415205072111013646 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.delAtt(@var{ncid},@var{varid},@var{name}) ## Deletes the attribute named @var{name} of the variable @var{varid} in the data set @var{ncid}. ## ## To delete a global attribute use netcdf.getConstant("global") for @var{varid}. ## @seealso{netcdf.defAtt,netcdf.getConstant} ## @end deftypefn function varargout = delAtt(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_delAtt (varargin{:}); else netcdf_delAtt (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/endDef.m0000644000000000000000000000174215205072111013617 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.endDef (@var{ncid}) ## Leaves define-mode of NetCDF file @var{ncid}. ## @end deftypefn function varargout = endDef(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_endDef (varargin{:}); else netcdf_endDef (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/getAtt.m0000644000000000000000000000235315205072111013661 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{data} =} netcdf.getAtt (@var{ncid},@var{varid},@var{name}) ## Get the value of a NetCDF attribute. ## ## This function returns the value of the attribute called @var{name} of the variable ## @var{varid} in the NetCDF file @var{ncid}. ## ## For global attributes @var{varid} can be netcdf.getConstant("global"). ## @seealso{netcdf.putAtt} ## @end deftypefn function varargout = getAtt(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_getAtt (varargin{:}); else netcdf_getAtt (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/getChunkCache.m0000644000000000000000000000205715205072111015126 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{size}, @var{nelems}, @var{preemption}] =} netcdf.getChunkCache() ## Gets the default chunk cache settings in the HDF5 library. ## @end deftypefn function varargout = getChunkCache(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_getChunkCache (varargin{:}); else netcdf_getChunkCache (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/getConstant.m0000644000000000000000000000206215205072111014717 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{value} =} netcdf.getConstant(@var{name}) ## Returns the value of a NetCDF constant called @var{name}. ## @seealso{netcdf.getConstantNames} ## @end deftypefn function varargout = getConstant(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_getConstant (varargin{:}); else netcdf_getConstant (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/getConstantNames.m0000644000000000000000000000200415205072111015677 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{value} =} netcdf.getConstantNames() ## Returns a list of all constant names. ## @end deftypefn function varargout = getConstantNames(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_getConstantNames (varargin{:}); else netcdf_getConstantNames (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/getVar.m0000644000000000000000000000316315205072111013661 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid}) ## @deftypefnx {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid},@var{start}) ## @deftypefnx {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid},@var{start},@var{count}) ## @deftypefnx {} {@var{data} =} netcdf.getVar (@var{ncid},@var{varid},@var{start},@var{count},@var{stride}) ## Get the data from a NetCDF variable. ### ## The data @var{data} is loaded from the variable @var{varid} of the NetCDF file @var{ncid}. ## ## @var{start} is the start index of each dimension (0-based and defaults to a vector of zeros), ## ## @var{count} is the number of elements of to be written along each dimension (default all elements) ## ## @var{stride} is the sampling interval. ## @end deftypefn function varargout = getVar(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_getVar (varargin{:}); else netcdf_getVar (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inq.m0000644000000000000000000000257315205072111013224 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{ndims},@var{nvars},@var{ngatts},@var{unlimdimid}] =} netcdf.inq(@var{ncid}) ## Return informat about a netcdf file. ## ## Return the number of dimension (@var{ndims}), the number of variables (@var{nvars}), the number ## of global attributes (@var{ngatts}) and the id of the unlimited dimension (@var{unlimdimid}). ## ## If no unlimited dimension is declared -1 is returned. ## ## For NetCDF4 files, one should use the function netcdf.inqUnlimDims as multiple unlimited dimension exists. ## @end deftypefn function varargout = inq(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inq (varargin{:}); else netcdf_inq (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqAtt.m0000644000000000000000000000204115205072111013663 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{xtype},@var{len}] = } netcdf.inqAtt(@var{ncid},@var{varid},@var{name}) ## Get attribute type and length. ## @seealso{netcdf.inqAttName} ## @end deftypefn function varargout = inqAtt(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqAtt (varargin{:}); else netcdf_inqAtt (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqAttID.m0000644000000000000000000000232415205072111014104 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{attnum} =} netcdf.inqAttID(@var{ncid},@var{varid},@var{attname}) ## Return the attribute id @var{attnum} of the attribute named @var{attname} of the variable @var{varid} in the dataset @var{ncid}. ## ## For global attributes @var{varid} can be ## netcdf.getConstant("global"). ## @seealso{netcdf.inqAttName} ## @end deftypefn function varargout = inqAttID(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqAttID (varargin{:}); else netcdf_inqAttID (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqAttName.m0000644000000000000000000000240615205072111014471 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{name} =} netcdf.inqAttName (@var{ncid},@var{varid},@var{attnum}) ## Get the name of a NetCDF attribute. ## ## This function returns the name of the attribute with the id @var{attnum} of the variable ## @var{varid} in the NetCDF file @var{ncid}. ## ## For global attributes @var{varid} can be netcdf.getConstant("global"). ## @seealso{netcdf.inqAttName} ## @end deftypefn function varargout = inqAttName(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqAttName (varargin{:}); else netcdf_inqAttName (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqDim.m0000644000000000000000000000205115205072111013645 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{name},@var{length}] =} netcdf.inqDim(@var{ncid},@var{dimid}) ## Returns the name and length of a NetCDF dimension. ## @seealso{netcdf.inqDimID} ## @end deftypefn function varargout = inqDim(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqDim (varargin{:}); else netcdf_inqDim (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqDimID.m0000644000000000000000000000202515205072111014063 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{dimid} =} netcdf.inqDimID(@var{ncid},@var{dimname}) ## Return the id of a NetCDF dimension. ## @seealso{netcdf.inqDim} ## @end deftypefn function varargout = inqDimID(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqDimID (varargin{:}); else netcdf_inqDimID (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqDimIDs.m0000644000000000000000000000241415205072111014250 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{dimids} =} netcdf.inqDimID(@var{ncid}) ## @deftypefnx {} {@var{dimids} =} netcdf.inqDimID(@var{ncid},@var{include_parents}) ## Return the dimension ids defined in a NetCDF file. ## If @var{include_parents} is 1, the dimension ids of the parent group are also returned. ## Per default this is not the case (@var{include_parents} is 0). ## @seealso{netcdf.inqDim} ## @end deftypefn function varargout = inqDimIDs(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqDimIDs (varargin{:}); else netcdf_inqDimIDs (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqFormat.m0000644000000000000000000000220015205072111014360 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{format} =} netcdf.inqFormat(@var{ncid}) ## Return the NetCDF format of the dataset @var{ncid}. ## ## Format might be one of the following ## "FORMAT_CLASSIC", "FORMAT_64BIT", "FORMAT_NETCDF4" or "FORMAT_NETCDF4_CLASSIC" ## @end deftypefn function varargout = inqFormat(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqFormat (varargin{:}); else netcdf_inqFormat (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqGrpFullNcid.m0000644000000000000000000000207615205072111015314 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{grp_ncid} =} netcdf.inqGrpFullNcid(@var{ncid},@var{name}) ## Return the group id based on the full group name. ## @seealso{netcdf.inqGrpName} ## @end deftypefn function varargout = inqGrpFullNcid(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqGrpFullNcid (varargin{:}); else netcdf_inqGrpFullNcid (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqGrpName.m0000644000000000000000000000201615205072111014466 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{name} =} netcdf.inqGrpName(@var{ncid}) ## Return group name in a NetCDF file. ## @seealso{netcdf.inqGrps} ## @end deftypefn function varargout = inqGrpName(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqGrpName (varargin{:}); else netcdf_inqGrpName (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqGrpNameFull.m0000644000000000000000000000204715205072111015315 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{name} =} netcdf.inqGrpNameFull(@var{ncid}) ## Return full name of group in NetCDF file. ## @seealso{netcdf.inqGrpName} ## @end deftypefn function varargout = inqGrpNameFull(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqGrpNameFull (varargin{:}); else netcdf_inqGrpNameFull (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqGrpParent.m0000644000000000000000000000203215205072111015035 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{parent_ncid} =} netcdf.inqGrpParent(@var{ncid}) ## Return id of the parent group ## @seealso{netcdf.inqGrpName} ## @end deftypefn function varargout = inqGrpParent(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqGrpParent (varargin{:}); else netcdf_inqGrpParent (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqGrps.m0000644000000000000000000000200715205072111014050 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{ncids} =} netcdf.inqGrps(@var{ncid}) ## Return all groups ids in a NetCDF file. ## @seealso{netcdf.inqGrps} ## @end deftypefn function varargout = inqGrps(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqGrps (varargin{:}); else netcdf_inqGrps (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqLibVers.m0000644000000000000000000000177415205072111014515 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{vers} =} netcdf.inqLibVers() ## Returns the version of the NetCDF library as a string. ## @end deftypefn function varargout = inqLibVers(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqLibVers (varargin{:}); else netcdf_inqLibVers (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqNcid.m0000644000000000000000000000202615205072111014013 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{grp_ncid} =} netcdf.inqNcid(@var{ncid},@var{name}) ## Return group id based on its name ## @seealso{netcdf.inqGrpFullNcid} ## @end deftypefn function varargout = inqNcid(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqNcid (varargin{:}); else netcdf_inqNcid (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqUnlimDims.m0000644000000000000000000000204715205072111015042 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{unlimdimids} =} netcdf.inqUnlimDims(@var{ncid}) ## Return the id of all unlimited dimensions of the NetCDF file @var{ncid}. ## @end deftypefn function varargout = inqUnlimDims(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqUnlimDims (varargin{:}); else netcdf_inqUnlimDims (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqUserType.m0000644000000000000000000000236515205072111014724 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{typename}, @var{bytesize}, @var{basetypeid}, @var{numfields}, @var{classid}] = } netcdf.inqUserType(@var{ncid},@var{typeid}) ## Provide information on a user defined type @var{typeid} in the dataset @var{ncid}. ## ## The function returns the typename, bytesize, base type id, number of fields and class identifier of the type. ## ## @end deftypefn function varargout = inqUserType(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqUserType (varargin{:}); else netcdf_inqUserType (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVar.m0000644000000000000000000000251515205072111013671 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{name},@var{nctype},@var{dimids},@var{nattr}] = } netcdf.inqVar (@var{ncid},@var{varid}) ## Inquires information about a NetCDF variable. ## ## This functions returns the @var{name}, the NetCDF type @var{nctype}, an array of dimension ids ## ## @var{dimids} and the number of attributes @var{nattr} of the NetCDF variable. ## ## @var{nctype} in an integer corresponding NetCDF constants. ## @seealso{netcdf.inqVarID,netcdf.getConstant} ## @end deftypefn function varargout = inqVar(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVar (varargin{:}); else netcdf_inqVar (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVarChunking.m0000644000000000000000000000242015205072111015353 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{storage},@var{chunkSizes}] = } netcdf.inqVarChunking (@var{ncid},@var{varid}) ## Determines the chunking settings of NetCDF variable @var{varid}. ## ## If @var{storage} is the string "chunked", the variable is stored by chunk of the size @var{chunkSizes}.@* ## If @var{storage} is the string "contiguous", the variable is stored in a contiguous way. ## @end deftypefn function varargout = inqVarChunking(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVarChunking (varargin{:}); else netcdf_inqVarChunking (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVarDeflate.m0000644000000000000000000000241015205072111015150 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{shuffle},@var{deflate},@var{deflate_level}] = } netcdf.inqVarDeflate (@var{ncid},@var{varid}) ## Determines the compression settings NetCDF variable @var{varid}. ## ## If @var{deflate} is true, then the variable is compressed. ## ## The compression level @var{deflate_level} is an integer between 0 (no compression) and 9 (maximum compression). ## @end deftypefn function varargout = inqVarDeflate(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVarDeflate (varargin{:}); else netcdf_inqVarDeflate (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVarFill.m0000644000000000000000000000235315205072111014500 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{no_fill},@var{fillvalue}] = } netcdf.inqVarFill(@var{ncid},@var{varid}) ## Determines the fill-value settings of the NetCDF variable @var{varid}. ## ## If @var{no_fill} is false, then the values between no-contiguous writes are filled with the value @var{fill_value}. ## ## This is disabled by setting @var{no_fill} to true. ## @end deftypefn function varargout = inqVarFill(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVarFill (varargin{:}); else netcdf_inqVarFill (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVarFletcher32.m0000644000000000000000000000236715205072111015520 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{checksum} =} netcdf.inqVarFletcher32(@var{ncid},@var{varid}) ## Determines the checksum settings of the variable with the id @var{varid} in the data set @var{ncid}. ## ## If fletcher32 checksums is turned on for this variable, then @var{checksum} is the string "FLETCHER32". ## Otherwise it is the string "NOCHECKSUM". ## @end deftypefn function varargout = inqVarFletcher32(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVarFletcher32 (varargin{:}); else netcdf_inqVarFletcher32 (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVarID.m0000644000000000000000000000206015205072111014101 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{varid} = } netcdf.inqVarID (@var{ncid},@var{name}) ## Return the id of a variable based on its name. ## @seealso{netcdf.defVar, netcdf.inqVarIDs} ## @end deftypefn function varargout = inqVarID(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVarID (varargin{:}); else netcdf_inqVarID (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVarIDs.m0000644000000000000000000000212315205072111014264 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{varids} = } netcdf.inqVarID (@var{ncid}) ## Return all variable ids. ## ## This functions returns all variable ids in a NetCDF file or NetCDF group. ## @seealso{netcdf.inqVarID} ## @end deftypefn function varargout = inqVarIDs(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVarIDs (varargin{:}); else netcdf_inqVarIDs (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/inqVlen.m0000644000000000000000000000224715205072111014047 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {[@var{typename}, @var{bytesize}, @var{basetypeid}] = } netcdf.inqVlen(@var{ncid},@var{typeid}) ## Provide information on a NC_VLEN variable length array type @var{typeid} in the dataset @var{ncid}. ## ## The function returns the typename, bytesize, and base type id. ## ## @end deftypefn function varargout = inqVlen(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_inqVlen (varargin{:}); else netcdf_inqVlen (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/open.m0000644000000000000000000000205315205072111013367 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{ncid} =} netcdf.open(@var{filename},@var{mode}) ## Opens the file named @var{filename} in the mode @var{mode}. ## @seealso{netcdf.create, netcdf.close} ## @end deftypefn function varargout = open(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_open (varargin{:}); else netcdf_open (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/putAtt.m0000644000000000000000000000241015205072111013704 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.putAtt (@var{ncid},@var{varid},@var{name},@var{data}) ## Defines a NetCDF attribute. ## ## This function defines the attribute called @var{name} of the variable ## @var{varid} in the NetCDF file @var{ncid}. The value of the attribute will be @var{data}. ## ## For global attributes @var{varid} can be ## netcdf.getConstant("global"). ## @seealso{netcdf.getAtt} ## @end deftypefn function varargout = putAtt(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_putAtt (varargin{:}); else netcdf_putAtt (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/putVar.m0000644000000000000000000000314615205072111013713 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.putVar (@var{ncid},@var{varid},@var{data}) ## @deftypefnx {} {} netcdf.putVar (@var{ncid},@var{varid},@var{start},@var{data}) ## @deftypefnx {} {} netcdf.putVar (@var{ncid},@var{varid},@var{start},@var{count},@var{data}) ## @deftypefnx {} {} netcdf.putVar (@var{ncid},@var{varid},@var{start},@var{count},@var{stride},@var{data}) ## Put data in a NetCDF variable. ## ## The data @var{data} is stored in the variable @var{varid} of the NetCDF file @var{ncid}. ## ## @var{start} is the start index of each dimension (0-based and defaults to a vector of zeros), ## ## @var{count} is the number of elements of to be written along each dimension (default all elements) ## ## @var{stride} is the sampling interval. ## @end deftypefn function varargout = putVar(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_putVar (varargin{:}); else netcdf_putVar (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/reDef.m0000644000000000000000000000173515205072111013461 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.reDef (@var{ncid}) ## Enter define-mode of NetCDF file @var{ncid}. ## @end deftypefn function varargout = reDef(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_reDef (varargin{:}); else netcdf_reDef (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/renameAtt.m0000644000000000000000000000240615205072111014350 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.renameAtt(@var{ncid},@var{varid},@var{old_name},@var{new_name}) ## Renames the attribute named @var{old_name} of the variable @var{varid} in the data set @var{ncid}. ## ## @var{new_name} is the new name of the attribute. ## ## To rename a global attribute use netcdf.getConstant("global") for @var{varid}. ## @seealso{netcdf.copyAtt,netcdf.getConstant} ## @end deftypefn function varargout = renameAtt(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_renameAtt (varargin{:}); else netcdf_renameAtt (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/renameDim.m0000644000000000000000000000211515205072111014326 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.renameDim(@var{ncid},@var{dimid},@var{name}) ## Renames the dimension with the id @var{dimid} in the data set @var{ncid}. @var{name} is the new name of the dimension. ## @end deftypefn function varargout = renameDim(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_renameDim (varargin{:}); else netcdf_renameDim (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/renameVar.m0000644000000000000000000000211315205072111014343 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.renameVar(@var{ncid},@var{varid},@var{name}) ## Renames the variable with the id @var{varid} in the data set @var{ncid}. @var{name} is the new name of the variable. ## @end deftypefn function varargout = renameVar(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_renameVar (varargin{:}); else netcdf_renameVar (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/setChunkCache.m0000644000000000000000000000217415205072111015142 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.setChunkCache(@var{size}, @var{nelems}, @var{preemption}) ## Sets the default chunk cache settings in the HDF5 library. ## ## The settings applies to all files which are subsequently opened or created. ## @end deftypefn function varargout = setChunkCache(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_setChunkCache (varargin{:}); else netcdf_setChunkCache (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/setDefaultFormat.m0000644000000000000000000000230515205072111015677 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{old_format} =} netcdf.setDefaultFormat(@var{format}) ## Sets the default format of the NetCDF library and returns the previous default format (as a numeric value). ## ## @var{format} can be "format_classic", "format_64bit", "format_netcdf4" or "format_netcdf4_classic". ## @end deftypefn function varargout = setDefaultFormat(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_setDefaultFormat (varargin{:}); else netcdf_setDefaultFormat (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/setFill.m0000644000000000000000000000220615205072111014030 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{old_mode} =} netcdf.setFill(@var{ncid},@var{fillmode}) ## Change the fill mode (@var{fillmode}) of the data set @var{ncid}. ## ## @var{fillmode} can be either "fill" or "nofill". ## ## The previous value of the fill mode is returned. ## @end deftypefn function varargout = setFill(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_setFill (varargin{:}); else netcdf_setFill (varargin{:}); endif endfunction netcdf-1.0.20/inst/+netcdf/sync.m0000644000000000000000000000174415205072111013410 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} netcdf.sync(@var{ncid}) ## Writes all changes to the disk and leaves the file open. ## @end deftypefn function varargout = sync(varargin) if nargout > 0 [varargout{1:nargout}] = netcdf_sync (varargin{:}); else netcdf_sync (varargin{:}); endif endfunction netcdf-1.0.20/inst/PKG_ADD0000644000000000000000000000071615205072111011752 0ustar00# on package load, attempt to load docs try pkg_dir = fileparts (fullfile (mfilename ("fullpath"))); doc_file = fullfile (pkg_dir, "doc", "octave-netcdf.qch"); if exist(doc_file, "file") if exist("__event_manager_register_documentation__") __event_manager_register_documentation__ (doc_file); elseif exist("__event_manager_register_doc__") __event_manager_register_doc__ (doc_file); endif endif catch # do nothing end_try_catch netcdf-1.0.20/inst/PKG_DEL0000644000000000000000000000073215205072111011764 0ustar00# on package unload, attempt to unload docs try pkg_dir = fileparts (fullfile (mfilename ("fullpath"))); doc_file = fullfile (pkg_dir, "doc", "octave-netcdf.qch"); if exist(doc_file, "file") if exist("__event_manager_unregister_documentation__") __event_manager_unregister_documentation__ (doc_file); elseif exist("__event_manager_unregister_doc__") __event_manager_unregister_doc__ (doc_file); endif endif catch # do nothing end_try_catch netcdf-1.0.20/inst/import_netcdf.m0000644000000000000000000000173615205072111013754 0ustar00## Copyright (C) 2023 John Donoghue ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} import_fits ## Dummy function provided to provide compatibility with older versions of GNU Octave netcdf ## ## Function is deprecated. ## @end deftypefn function import_netcdf # doesnt do anything anymore as package files are provided in inst/+netcdf endfunction netcdf-1.0.20/inst/nccreate.m0000644000000000000000000001025515205072111012677 0ustar00## Copyright (C) 2013-2022 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} nccreate(@var{filename},@var{varname}) ## @deftypefnx {} {} nccreate(@var{filename},@var{varname},"property",@var{value},...) ## ## Create the variable @var{varname} in the file @var{filename}. ## ## @subsubheading Properties ## The following properties can be used: ## @itemize ## @item "Dimensions": a cell array with the dimension names followed by their ## length or Inf if the dimension is unlimited. If the property is omitted, a ## scalar variable is created. ## @item "Datatype": a string with the Octave data type name ## (see @code{ncinfo} for the correspondence between Octave and NetCDF data ## types). The default data type is a "double". ## @item "Format": This can be "netcdf4_classic" (default), "classic", "64bit" ## or "netcdf4". ## @item "FillValue": the value used for undefined elements of the NetCDF ## variable. ## @item "ChunkSize": the size of the data chunks. If omitted, the variable is ## not chunked. ## @item "DeflateLevel": The deflate level for compression. It can be the string ## "disable" (default) for no compression or an integer between 0 (no ## compression) and 9 (maximum compression). ## @item "Shuffle": true for enabling the shuffle filter or false (default) for ## disabling it. ## @end itemize ## ## @subsubheading Example ## @example ## nccreate("test.nc","temp","Dimensions",@{"lon",10,"lat",20@},"Format","classic"); ## ncdisp("test.nc"); ## @end example ## @seealso{ncwrite} ## @end deftypefn function nccreate (filename, varname, varargin) dimensions = {}; datatype = 'double'; ncformat = 'netcdf4_classic'; FillValue = []; ChunkSize = []; DeflateLevel = 'disable'; Shuffle = false; for i = 1:2:length(varargin) if strcmp(varargin{i},'Dimensions') dimensions = varargin{i+1}; elseif strcmp(varargin{i},'Datatype') datatype = varargin{i+1}; elseif strcmp(varargin{i},'Format') ncformat = varargin{i+1}; elseif strcmp(varargin{i},'FillValue') FillValue = varargin{i+1}; elseif strcmp(varargin{i},'ChunkSize') ChunkSize = varargin{i+1}; elseif strcmp(varargin{i},'DeflateLevel') DeflateLevel = varargin{i+1}; elseif strcmp(varargin{i},'Shuffle') Shuffle = varargin{i+1}; else error(['unknown keyword ' varargin{i} '.']); endif endfor if ~isempty(stat(filename)) ncid = netcdf_open(filename,'NC_WRITE'); netcdf_reDef(ncid); else mode = format2mode(ncformat); ncid = netcdf_create(filename,mode); endif % create dimensions dimids = []; i = 1; while i <= length(dimensions) if i == length(dimensions) dimids(end+1) = netcdf_inqDimID(ncid,dimensions{i}); i = i+1; elseif ischar(dimensions{i+1}) dimids(end+1) = netcdf_inqDimID(ncid,dimensions{i}); i = i+1; else try if isinf(dimensions{i+1}) dimensions{i+1} = netcdf_getConstant('NC_UNLIMITED'); endif dimids(end+1) = netcdf_defDim(ncid,dimensions{i},dimensions{i+1}); catch dimids(end+1) = netcdf_inqDimID(ncid,dimensions{i}); end_try_catch i = i+2; endif endwhile varid = netcdf_defVar(ncid,varname,oct2nctype(datatype),dimids); if ~isempty(ChunkSize) netcdf_defVarChunking(ncid,varid,'chunked',ChunkSize); endif if ~isempty(FillValue) % value of nofill? netcdf_defVarFill(ncid,varid,false,FillValue); endif if isnumeric(DeflateLevel) netcdf_defVarDeflate(ncid,varid,Shuffle,true,DeflateLevel); endif netcdf_close(ncid); endfunction netcdf-1.0.20/inst/ncdisp.m0000644000000000000000000001057215205072111012375 0ustar00## Copyright (C) 2013-2022 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} ncdisp (@var{filename}) ## Display meta-data of the NetCDF file @var{filename} ## ## @subsubheading Example ## @example ## ncdisp("test.nc"); ## @end example ## @seealso{ncinfo} ## @end deftypefn function ncdisp (filename) info = ncinfo(filename); fprintf("Source:\n"); indent = repmat(" ",[1 11]); fprintf("%s%s\n",indent,fullfile(filename)); fprintf("Format:\n"); fprintf("%s%s\n",indent,info.Format); colors.var = "red"; colors.att = "cyan"; colors.dim = "blue"; group_color = "green"; printgroup("",info,colors); endfunction function s = fmtattr(val) if ischar(val) s = sprintf("""%s""",val); else s = num2str(val); endif endfunction function s = fmtsize(sz) s = sprintf("%gx",sz); s = s(1:end-1); endfunction function printgroup(indent1,info,colors) indent2 = [indent1 repmat(" ",[1 11])]; indent3 = [indent2 repmat(" ",[1 11])]; % attributes if ~isempty(info.Attributes) fprintf("%sGlobal Attributes:\n",indent1); printattr(indent2,info.Attributes,colors); endif % dimensions if ~isempty(info.Dimensions) % length of the longest attribute name dim = info.Dimensions; maxlen = max(cellfun(@length,{dim.Name})); fprintf("%sDimensions:\n",indent1); for i = 1:length(dim) space = repmat(" ",[maxlen-length(dim(i).Name) 1]); fprintf("%s",indent2); colormsg(sprintf("%s %s= %d",dim(i).Name,space,dim(i).Length),colors.dim); fprintf("\n"); endfor endif % variables if isfield(info,"Variables") if ~isempty(info.Variables) % length of the longest attribute name vars = info.Variables; fprintf("%sVariables:\n",indent1); for i = 1:length(vars) %fprintf("%s%s\n",indent2(1:end-7),vars(i).Name); colormsg(sprintf("%s%s\n",indent2(1:end-7),vars(i).Name),colors.var); if ~isempty(vars(i).Size) sz = fmtsize(vars(i).Size); dimname = sprintf("%s,",vars(i).Dimensions.Name); dimname = dimname(1:end-1); else sz = "1x1"; dimname = ""; endif fprintf("%sSize: %s\n",indent2,sz); fprintf("%sDimensions: %s\n",indent2,dimname); fprintf("%sDatatype: %s\n",indent2,vars(i).Datatype); if ~isempty(vars(i).Attributes); fprintf("%sAttributes:\n",indent2); printattr(indent3,vars(i).Attributes,colors); endif endfor endif endif % groups if ~isempty(info.Groups) % length of the longest attribute name grps = info.Groups; fprintf("%sGroups:\n",indent1); for i = 1:length(grps) fprintf("%s%s\n",indent2(1:end-7),grps(i).Name); printgroup(indent2,grps(i),colors); endfor endif endfunction function printattr(indent,attr,colors) % length of the longest attribute name maxlen = max(cellfun(@length,{attr.Name})); for i = 1:length(attr) space = repmat(" ",[maxlen-length(attr(i).Name) 1]); %fprintf("%s%s %s= %s\n",indent,attr(i).Name,space,fmtattr(attr(i).Value)); fprintf("%s",indent); colormsg(sprintf("%s %s= %s\n",attr(i).Name,space,fmtattr(attr(i).Value)),colors.att); endfor endfunction function colormsg (msg,color) if strcmp(getenv("TERM"),"xterm") esc = char(27); % ANSI escape codes colors.black = [esc, "[30m"]; colors.red = [esc, "[31m"]; colors.green = [esc, "[32m"]; colors.yellow = [esc, "[33m"]; colors.blue = [esc, "[34m"]; colors.magenta = [esc, "[35m"]; colors.cyan = [esc, "[36m"]; colors.white = [esc, "[37m"]; reset = [esc, "[0m"]; c = getfield(colors,color); fprintf('%s',[c, msg, reset]); else fprintf('%s',msg); endif endfunction netcdf-1.0.20/inst/ncinfo.m0000644000000000000000000002002215205072111012360 0ustar00## Copyright (C) 2013-2022 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{info} =} ncinfo (@var{filename}) ## @deftypefnx {} {@var{info} =} ncinfo (@var{filename}, @var{varname}) ## @deftypefnx {} {@var{info} =} ncinfo (@var{filename}, @var{groupname}) ## Return information about an entire NetCDF file @var{filename} (i.e. the root ## group "/"), about the variable called @var{varname} or the group called ## @var{groupname}. ## ## The structure @var{info} has always the following fields: ## @itemize ## @item @var{Filename}: the name of the NetCDF file ## @item @var{Format}: one of the strings "CLASSIC", "64BIT", "NETCDF4" ## or "NETCDF4_CLASSIC" ## @end itemize ## ## The structure @var{info} has additional fields depending on whether a ## group of variable is queried. ## ## @subsubheading Groups ## ## Groups are returned as an array structure with the following fields: ## ## @itemize ## @item @var{Name}: the group name. The root group is named "/". ## @item @var{Dimensions}: a array structure with the dimensions. ## @item @var{Variables}: a array structure with the variables. ## @item @var{Attributes}: a array structure with global attributes. ## @item @var{Groups}: a array structure (one for each group) with the ## same fields as this structure. ## @end itemize ## ## @subsubheading Dimensions ## ## Dimensions are returned as an array structure with the following fields: ## @itemize ## @item @var{Name}: the name of the dimension ## @item @var{Length}: the length of the dimension ## @item @var{Unlimited}: true of the dimension has no fixed limited, false ## @end itemize ## ## @subsubheading Variables ## ## Variables are returned as an array structure with the following fields: ## @itemize ## @item @var{Name}: the name of the dimension ## @item @var{Dimensions}: array structure of all dimensions of this variable ## with the same structure as above. ## @item @var{Size}: array with the size of the variable ## @item @var{Datatype}: string with the corresponding octave data-type ## (see below) ## @item @var{Attributes}: a array structure of attributes ## @item @var{FillValue}: the NetCDF fill value of the variable. If the fill ## value is not defined, then this attribute is an empty array ([]). ## @item @var{DeflateLevel}: the NetCDF deflate level between 0 (no ## compression) and 9 (maximum compression). ## @item @var{Shuffle}: is true if the shuffle filter is activated to improve ## compression, otherwise false. ## @item @var{CheckSum}: is set to "fletcher32", if check-sums are used, ## otherwise this field is not defined. ## @end itemize ## ## @subsubheading Attributes ## ## Attributes are returned as an array structure with the following fields: ## @itemize ## @item @var{Name}: the name of the attribute ## @item @var{Value}: the value of the attribute (with the corresponding type) ## @item @var{Unlimited}: true of the dimension has no fixed limited, false ## @end itemize ## ## @subsubheading Data-types ## ## The following the the correspondence between the Octave and NetCDF ## data-types: ## ## @multitable @columnfractions .5 .5 ## @headitem Octave type @tab NetCDF type ## @item @code{int8} @tab @code{NC_BYTE} ## @item @code{uint8} @tab @code{NC_UBYTE} ## @item @code{int16} @tab @code{NC_SHORT} ## @item @code{uint16} @tab @code{NC_USHORT} ## @item @code{int32} @tab @code{NC_INT} ## @item @code{uint32} @tab @code{NC_UINT} ## @item @code{int64} @tab @code{NC_INT64} ## @item @code{uint64} @tab @code{NC_UINT64} ## @item @code{single} @tab @code{NC_FLOAT} ## @item @code{double} @tab @code{NC_DOUBLE} ## @item @code{char} @tab @code{NC_CHAR} ## @end multitable ## ## The output of @code{ncinfo} can be used to create a NetCDF file with the same ## meta-data using @code{ncwriteschema}. ## ## Note: If there are no attributes (or variable or groups), the corresponding ## field is an empty matrix and not an empty struct array for compatibility ## with matlab. ## ## @seealso{ncread,nccreate,ncwriteschema,ncdisp} ## ## @end deftypefn function info = ncinfo (filename, name) ncid = netcdf_open(filename,"NC_NOWRITE"); info.Filename = filename; if nargin == 1 name = "/"; endif [gid,varid] = ncloc(ncid,name); if isempty(varid) info = ncinfo_group(info,gid); else unlimdimIDs = netcdf_inqUnlimDims(gid); info = ncinfo_var(info,gid,varid,unlimdimIDs); endif # NetCDF format ncformat = netcdf_inqFormat(ncid); info.Format = lower(strrep(ncformat,'FORMAT_','')); netcdf_close(ncid); endfunction function dims = ncinfo_dim(ncid,dimids,unlimdimIDs) dims = []; for i=1:length(dimids) tmp = struct(); [tmp.Name, tmp.Length] = netcdf_inqDim(ncid,dimids(i)); tmp.Unlimited = any(unlimdimIDs == dimids(i)); if isempty(dims) dims = [tmp]; else dims(i) = tmp; endif endfor endfunction function vinfo = ncinfo_var(vinfo,ncid,varid,unlimdimIDs) [vinfo.Name,xtype,dimids,natts] = netcdf_inqVar(ncid,varid); % Information about dimension vinfo.Dimensions = ncinfo_dim(ncid,dimids,unlimdimIDs); if isempty(vinfo.Dimensions) vinfo.Size = []; else vinfo.Size = cat(2,vinfo.Dimensions.Length); endif % Data type if xtype >= netcdf_getConstant("NC_FIRSTUSERTYPEID") [utype_name, utype_bsize, utype_typeid, utype_nfields, utype_classid] = netcdf_inqUserType(ncid, xtype); vinfo.Datatype = nc2octtype(utype_typeid); if utype_classid == netcdf_getConstant("NC_VLEN") vinfo.Datatype = [vinfo.Datatype '*']; endif else vinfo.Datatype = nc2octtype(xtype); endif % Attributes vinfo.Attributes = []; for i = 0:natts-1 tmp = struct(); tmp.Name = netcdf_inqAttName(ncid,varid,i); tmp.Value = netcdf_getAtt(ncid,varid,tmp.Name); if isempty(vinfo.Attributes) vinfo.Attributes = [tmp]; else vinfo.Attributes(i+1) = tmp; endif endfor % chunking, fillvalue, compression [storage,vinfo.ChunkSize] = netcdf_inqVarChunking(ncid,varid); [nofill,vinfo.FillValue] = netcdf_inqVarFill(ncid,varid); if nofill vinfo.FillValue = []; endif [shuffle,deflate,vinfo.DeflateLevel] = ... netcdf_inqVarDeflate(ncid,varid); if ~deflate vinfo.DeflateLevel = []; endif vinfo.Shuffle = shuffle; # add checksum information if defined (unlike matlab) checksum = netcdf_inqVarFletcher32(ncid,varid); if ~strcmp(checksum,'nochecksum'); vinfo.Checksum = checksum; endif endfunction function info = ncinfo_group (info, ncid) info.Name = netcdf_inqGrpName(ncid); unlimdimIDs = netcdf_inqUnlimDims(ncid); [ndims,nvars,ngatts] = netcdf_inq(ncid); % dimensions dimids = netcdf_inqDimIDs(ncid); info.Dimensions = ncinfo_dim(ncid,dimids,unlimdimIDs); % variables for i=1:nvars info.Variables(i) = ncinfo_var(struct(),ncid,i-1,unlimdimIDs); endfor % global attributes info.Attributes = []; gid = netcdf_getConstant('NC_GLOBAL'); for i = 0:ngatts-1 tmp = struct(); tmp.Name = netcdf_inqAttName(ncid,gid,i); tmp.Value = netcdf_getAtt(ncid,gid,tmp.Name); if isempty(info.Attributes) info.Attributes = [tmp]; else info.Attributes(i+1) = tmp; endif endfor info.Groups = []; gids = netcdf_inqGrps(ncid); for i = 1:length(gids) tmp = ncinfo_group(struct(),gids(i)); if isempty(info.Groups) info.Groups = [tmp]; else info.Groups(i) = tmp; endif endfor endfunction netcdf-1.0.20/inst/ncread.m0000644000000000000000000001041615205072111012346 0ustar00## Copyright (C) 2013-2022 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{x} =} ncread (@var{filename}, @var{varname}) ## @deftypefnx {} {@var{x} =} ncread (@var{filename}, @var{varname},@var{start},@var{count},@var{stride}) ## ## Read the variable @var{varname} from the NetCDF file @var{filename}. ## ## If @var{start},@var{count} and @var{stride} are present, a subset of the ## variable is loaded. The parameter @var{start} contains the starting indices ## (1-based), @var{count} is the number of elements and @var{stride} the ## increment between two successive elements. These parameters are vectors whose ## length is equal to the number of dimension of the variable. Elements of ## @var{count} might be Inf which means that as many values as possible are ## loaded. ## ## If the variable has the _FillValue attribute, then the corresponding values ## are replaced by NaN (except for characters). NetCDF attributes scale_factor ## (default 1) and add_offset (default 0) are use the transform the variable ## during the loading: ## ## x = scale_factor * x_in_file + add_offset ## ## The output data type matches the NetCDF datatype, except when the attributes ## _FillValue, add_offset or scale_factor are defined in which case the output ## is a array in double precision. ## ## Note that values equal to the attribute missing_value are not replaced by ## NaN (for compatibility). ## ## @subsubheading Example ## Read the data from variable 'mydata' in the file test.nc. ## @example ## data = ncread('test.nc','mydata'); ## @end example ## ## @seealso{ncwrite,ncinfo,ncdisp} ## ## @end deftypefn function x = ncread (filename, varname, start, count, stride) ncid = netcdf_open(filename,'NC_NOWRITE'); [gid,varid] = ncvarid(ncid,varname); [varname_,xtype,dimids,natts] = netcdf_inqVar(gid,varid); % number of dimenions nd = length(dimids); sz = zeros(1,nd); for i=1:length(dimids) [dimname, sz(i)] = netcdf_inqDim(gid,dimids(i)); endfor if nargin < 3 start = ones(1,nd); endif if nargin < 4 count = inf*ones(1,nd); endif if nargin < 5 stride = ones(1,nd); endif % replace inf in count i = count == inf; count(i) = (sz(i)-start(i))./stride(i) + 1; x = netcdf_getVar(gid,varid,start-1,count,stride); % apply attributes factor = []; offset = []; fv = []; for i = 0:natts-1 attname = netcdf_inqAttName(gid,varid,i); if strcmp(attname,'scale_factor') factor = netcdf_getAtt(gid,varid,'scale_factor'); elseif strcmp(attname,'add_offset') offset = netcdf_getAtt(gid,varid,'add_offset'); elseif strcmp(attname,'_FillValue') fv = netcdf_getAtt(gid,varid,'_FillValue'); endif endfor netcdf_close(ncid); # the scaling does not make sense of characters if xtype == netcdf_getConstant('char') || ... xtype == netcdf_getConstant('string') return; endif # special handling for vlen if iscell(x) if !isempty(fv) || !isempty(factor) || !isempty(offset) for k=1:length(x) v = x{k}; if !isa(x{k}, 'double') v = double(v); endif if !isempty(fv) v(v == fv) = NaN; endif if !isempty(factor) v = v * factor; endif if !isempty(offset) v = v + offset; endif x{k} = v; endfor endif else if !isempty(fv) || !isempty(factor) || !isempty(offset) if !isa(x, 'double') x = double(x); endif if !isempty(fv) x(x == fv) = NaN; endif if !isempty(factor) x = x * factor; endif if !isempty(offset) x = x + offset; endif endif endif endfunction netcdf-1.0.20/inst/ncreadatt.m0000644000000000000000000000323315205072111013056 0ustar00## Copyright (C) 2013-2022 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {@var{val} =} ncreadatt(@var{filename},@var{varname},@var{attname}) ## ## Return the attribute @var{attname} of the variable @var{varname} in the file ## @var{filename}. ## ## Global attributes can be accessed by using "/" or the group name as ## @var{varname}. The type of attribute is mapped to the Octave data types. ## (see @code{ncinfo}). ## ## @subsubheading Example ## Read global attribute 'creation_date' ## @example ## d = ncreadatt('test.nc','/','creation_date') ## @end example ## Read atribute 'myattr' assigned to variable mydata. ## @example ## d = ncreadattr('test.nc', 'mydata', 'myattr'); ## @end example ## @seealso{ncinfo,ncwriteatt} ## @end deftypefn function val = ncreadatt(filename,varname,attname) ncid = netcdf_open(filename,'NC_NOWRITE'); [gid,varid] = ncloc(ncid,varname); if isempty(varid) varid = netcdf_getConstant('NC_GLOBAL'); endif val = netcdf_getAtt(gid,varid,attname); netcdf_close(ncid); endfunction netcdf-1.0.20/inst/ncwrite.m0000644000000000000000000000616015205072111012566 0ustar00## Copyright (C) 2013-2023 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} ncwrite (@var{filename}, @var{varname}, @var{x}) ## @deftypefnx {} {} ncwrite (@var{filename}, @var{varname}, @var{x}, @var{start}, @var{stride}) ## ## Write array @var{x} to the the variable @var{varname} in the NetCDF file ## @var{filename}. ## ## The variable with the name @var{varname} and the appropriate dimension must ## already exist in the NetCDF file. ## ## If @var{start} and @var{stride} are present, a subset of the ## variable is written. The parameter @var{start} contains the starting indices ## (1-based) and @var{stride} the ## increment between two successive elements. These parameters are vectors whose ## length is equal to the number of dimension of the variable. ## ## If the variable has the _FillValue attribute, then the values equal to NaN ## are replaced by corresponding fill value NetCDF attributes scale_factor ## (default 1) and add_oddset (default 0) are use the transform the variable ## during writing: ## ## x_in_file = (x - add_offset)/scale_factor ## ## @subsubheading Example ## Create a netcdf file with a variable of 'mydata' and then write ## data to that variable. ## @example ## nccreate('myfile.nc','mydata'); ## ncwrite('myfile.nc','mydata', 101); ## @end example ## ## @seealso{ncread,nccreate} ## ## @end deftypefn function ncwrite (filename, varname, x, start, stride) ncid = netcdf_open(filename,'NC_WRITE'); [gid,varid] = ncvarid(ncid,varname); [varname_,xtype,dimids,natts] = netcdf_inqVar(gid,varid); % number of dimenions nd = length(dimids); sz = zeros(1,nd); count = zeros(1,nd); for i=1:length(dimids) [dimname, sz(i)] = netcdf_inqDim(gid,dimids(i)); count(i) = size(x,i); endfor if nargin < 4 start = ones(1,nd); endif if nargin < 5 stride = ones(1,nd); endif % apply attributes factor = []; offset = []; fv = []; for i = 0:natts-1 attname = netcdf_inqAttName(gid,varid,i); if strcmp(attname,'scale_factor') factor = netcdf_getAtt(gid,varid,'scale_factor'); elseif strcmp(attname,'add_offset') offset = netcdf_getAtt(gid,varid,'add_offset'); elseif strcmp(attname,'_FillValue') fv = netcdf_getAtt(gid,varid,'_FillValue'); endif endfor if ~isempty(offset) x = x - offset; endif if ~isempty(factor) x = x / factor; endif if ~isempty(fv) x(isnan(x)) = fv; endif netcdf_putVar(gid,varid,start-1,count,stride,x); netcdf_close(ncid); endfunction netcdf-1.0.20/inst/ncwriteatt.m0000644000000000000000000000325315205072111013277 0ustar00## Copyright (C) 2013-2022 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} ncwriteatt(@var{filename},@var{varname},@var{attname},@var{val}) ## ## Defines the attribute @var{attname} of the variable @var{varname} in the file ## @var{filename} with the value @var{val}. ## ## Global attributes can be defined by using "/" or the group name as ## @var{varname}. The type of value is mapped to the NetCDF data types. ## (see @code{ncinfo}). ## ## @subsubheading Example ## Create a netcdf4 format file with a variable mydata and assign an attribute "units" to it. ## @example ## nccreate("myfile.nc", "mydata", "Format", "netcdf4"); ## ncwriteatt("myfile.nc", "mydata", "Units", "K"); ## @end example ## ## @seealso{ncinfo} ## @end deftypefn function ncwriteatt (filename, varname, attname, val) ncid = netcdf_open(filename,'NC_WRITE'); netcdf_reDef(ncid); [gid,varid] = ncloc(ncid,varname); if isempty(varid) varid = netcdf_getConstant('NC_GLOBAL'); endif netcdf_putAtt(ncid,varid,attname,val); netcdf_close(ncid); endfunction netcdf-1.0.20/inst/ncwriteschema.m0000644000000000000000000001077015205072111013751 0ustar00## Copyright (C) 2013-2022 Alexander Barth ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} ncwriteschema (@var{filename}, @var{schema}) ## ## Create a NetCDF called @var{filename} with the dimensions, attributes, ## variables and groups given by the structure @var{schema}. ## ## The variable @var{schema} has the same structure as the results of ## @code{ncinfo}. @code{ncinfo} and @code{ncwriteschema} can be used together to ## create a NetCDF using another file as a template: ## ## @subsubheading Example ## @example ## schema = ncinfo("template.nc"); ## # the new file should be named "new_file.nc" ## ncwriteschema("new_file.nc",schema); ## @end example ## ## Unused field in @var{schema} such as @var{ChunkSize}, @var{Shuffle}, ## @var{DeflateLevel}, @var{FillValue}, @var{Checksum} can be left-out if the ## corresponding feature is not used. ## ## Dimensions are considered as limited if the field @var{Unlimited} is missing, ## unless the dimension length is Inf. ## ## @seealso{ncinfo} ## ## @end deftypefn function ncwriteschema (filename, s) mode = format2mode(s.Format); ncid = netcdf_create(filename,mode); write_group(ncid,s) netcdf_close(ncid); endfunction function write_group(ncid,s) % normalize schema if ~isfield(s,'Dimensions') s.Dimensions = []; endif if isempty(s.Dimensions) s.Dimensions = struct('Name',{},'Length',{},'Unlimited',{}); endif if ~isfield(s,'Attributes') s.Attributes = struct('Name',{},'Value',{}); endif if ~isfield(s,'Variables') s.Variables = struct('Name',{},'Dimensions',{},'Datatype',{});; endif % dimension for i = 1:length(s.Dimensions) dim = s.Dimensions(i); if ~isfield(dim,'Unlimited') dim.Unlimited = false; endif len = dim.Length; if dim.Unlimited || isinf(len) len = netcdf_getConstant('NC_UNLIMITED'); endif s.Dimensions(i).id = netcdf_defDim(ncid,dim.Name,len); endfor % global attributes gid = netcdf_getConstant('NC_GLOBAL'); for j = 1:length(s.Attributes) netcdf_putAtt(ncid,gid,s.Attributes(j).Name,s.Attributes(j).Value); endfor % variables for i = 1:length(s.Variables) v = s.Variables(i); %v.Name % get dimension id dimids = zeros(length(v.Dimensions),1); for j = 1:length(v.Dimensions) dimids(j) = netcdf_inqDimID(ncid,v.Dimensions(j).Name); endfor % define variable dtype = oct2nctype(v.Datatype); varid = netcdf_defVar(ncid,v.Name,dtype,dimids); % define attributes for j = 1:length(v.Attributes) netcdf_putAtt(ncid,varid,v.Attributes(j).Name,v.Attributes(j).Value); endfor % define chunk size if isfield(v,'ChunkSize') if ~isempty(v.ChunkSize) netcdf_defVarChunking(ncid,varid,'chunked',v.ChunkSize); endif endif % define compression shuffle = false; deflatelevel = 0; if isfield(v,'Shuffle') if ~isempty(v.Shuffle) shuffle = v.Shuffle; endif endif if isfield(v,'DeflateLevel') if ~isempty(v.DeflateLevel) deflatelevel = v.DeflateLevel; endif endif if shuffle && defaltelevel != 0 deflate = defaltelevel != 0; netcdf_defVarDeflate(ncid,varid,shuffle,deflate,deflatelevel); endif % define fill value if isfield(v,'FillValue') if ~isempty(v.FillValue) % leave nofill setting unchanged [nofill,fillval] = netcdf_inqVarFill(ncid,varid); netcdf_defVarFill(ncid,varid,nofill,v.FillValue); endif endif % define checksum if isfield(v,'Checksum') if ~isempty(v.Checksum) netcdf_defVarFletcher32(ncid,varid,v.Checksum); endif endif endfor % groups if isfield(s,'Groups') if ~isempty(s.Groups) for i=1:length(s.Groups) g = s.Groups(i); gid = netcdf_defGrp(ncid,g.Name); write_group(gid,g); endfor endif endif endfunction netcdf-1.0.20/inst/private/0000755000000000000000000000000015205072111012404 5ustar00netcdf-1.0.20/inst/private/bug_47014.m0000644000000000000000000000054215205072111014077 0ustar00% test case for bug 47014 % https://savannah.gnu.org/bugs/?func=detailitem&item_id=47014 fname = [tempname '-octave-netcdf.nc']; nccreate(fname,'var','Dimensions',{'x',10},... 'FillValue',-32767,'Datatype','int16') var = ones(10,1); var(1) = NaN; ncwrite(fname,'var',var); var2 = ncread(fname,'var'); assert(isequaln(var,var2)) delete(fname) netcdf-1.0.20/inst/private/format2mode.m0000644000000000000000000000236115205072111015003 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function mode = format2mode(format) mode = netcdf_getConstant("NC_NOCLOBBER"); switch lower(format) case "classic" % do nothing case "64bit" mode = bitor(mode,netcdf_getConstant("NC_64BIT_OFFSET")); case "netcdf4_classic" mode = bitor(bitor(mode,netcdf_getConstant("NC_NETCDF4")),... netcdf_getConstant("NC_CLASSIC_MODEL")); case "netcdf4" mode = bitor(mode,netcdf_getConstant("NC_NETCDF4")); otherwise error("netcdf:unknownFormat","unknown format %s",format); endswitch endfunction netcdf-1.0.20/inst/private/nc2octtype.m0000644000000000000000000000333215205072111014655 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function otype = nc2octtype(nctype) if nctype == netcdf_getConstant("NC_CHAR") otype = "char"; elseif nctype == netcdf_getConstant("NC_FLOAT") otype = "single"; elseif nctype == netcdf_getConstant("NC_DOUBLE") otype = "double"; elseif nctype == netcdf_getConstant("NC_BYTE") otype = "int8"; elseif nctype == netcdf_getConstant("NC_SHORT") otype = "int16"; elseif nctype == netcdf_getConstant("NC_INT") otype = "int32"; elseif nctype == netcdf_getConstant("NC_INT64") otype = "int64"; elseif nctype == netcdf_getConstant("NC_UBYTE") otype = "uint8"; elseif nctype == netcdf_getConstant("NC_USHORT") otype = "uint16"; elseif nctype == netcdf_getConstant("NC_UINT") otype = "uint32"; elseif nctype == netcdf_getConstant("NC_UINT64") otype = "uint64"; elseif nctype == netcdf_getConstant("NC_STRING") otype = "string"; elseif nctype >= netcdf_getConstant("NC_FIRSTUSERTYPEID") otype = "user"; else error("netcdf:unknownDataType","unknown data type %d",nctype) endif endfunction netcdf-1.0.20/inst/private/ncloc.m0000644000000000000000000000173715205072111013670 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . % resolves a location (variable or group) by name function [gid,varid] = ncloc(ncid,name) try # try if name is a group gid = netcdf_inqGrpFullNcid(ncid,name); varid = []; catch # assume that name is a variable [gid,varid] = ncvarid(ncid,name); end_try_catch endfunction netcdf-1.0.20/inst/private/ncvarid.m0000644000000000000000000000175615205072111014221 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function [gid,varid] = ncvarid(ncid,varname) if strcmp(varname(1), '/') i = find(varname == '/',1,'last'); groupname = varname(1:i-1); varname = varname(i+1:end); gid = netcdf_inqGrpFullNcid(ncid,groupname); else gid = ncid; endif varid = netcdf_inqVarID(gid, varname); endfunction netcdf-1.0.20/inst/private/oct2nctype.m0000644000000000000000000000317415205072111014661 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function nctype = oct2nctype(otype) typemap.int8 = 'byte'; typemap.uint8 = 'ubyte'; typemap.int16 = 'short'; typemap.uint16 = 'ushort'; typemap.int32 = 'int'; typemap.uint32 = 'uint'; typemap.int64 = 'int64'; typemap.uint64 = 'uint64'; typemap.single = 'float'; typemap.double = 'double'; typemap.char = 'char'; typemap.string = 'string'; if ischar(otype) otype = lower(otype); if isfield(typemap,otype) nctype = typemap.(otype); else error('netcdf:unkownType','unknown type %s',otype); endif else nctype = otype; endif %typemap.byte = 'int8'; %typemap.ubyte = 'uint8'; %typemap.short = 'int16'; %typemap.ushort = 'uint16'; %typemap.int = 'int32'; %typemap.uint = 'uint32'; %typemap.int64 = 'int64'; %typemap.uint64 = 'uint64'; %typemap.float = 'single'; %typemap.double = 'double'; %typemap.char = 'char'; %typemap.string = 'string'; endfunction netcdf-1.0.20/inst/private/test_netcdf_attributes.m0000644000000000000000000002335215205072111017337 0ustar00%% Copyright (C) 2013-2025 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_netcdf_attributes() % rename attributes fname = [tempname '-octave-netcdf-rename-attrib.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); gid = netcdf.getConstant('global'); netcdf.putAtt(ncid,gid,'toto',int8(123)); name = netcdf.inqAttName(ncid,gid,0); assert(strcmp(name,'toto')); netcdf.renameAtt(ncid,gid,'toto','lala'); name = netcdf.inqAttName(ncid,gid,0); assert(strcmp(name,'lala')); netcdf.close(ncid); delete(fname) % delete attributes fname = [tempname '-octave-netcdf-delete-attrib.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); gid = netcdf.getConstant('global'); netcdf.putAtt(ncid,gid,'toto',int8(123)); varid = netcdf.defVar(ncid,'double_var','double',[]); [ndims,nvars,natts] = netcdf.inq(ncid); assert(natts == 1); netcdf.delAtt(ncid,gid,'toto'); [ndims,nvars,natts] = netcdf.inq(ncid); assert(natts == 0); netcdf.close(ncid); delete(fname) % copy attributes fname = [tempname '-octave-netcdf-copy-attrib.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); gid = netcdf.getConstant('global'); netcdf.putAtt(ncid,gid,'toto',int8(123)); varid = netcdf.defVar(ncid,'double_var','double',[]); netcdf.copyAtt(ncid,gid,'toto',ncid,varid); [ndims,nvars,natts] = netcdf.inq(ncid); assert(natts == 1); [varname,xtype,dimids,natts] = netcdf.inqVar(ncid,varid); val = netcdf.getAtt(ncid,varid,'toto'); assert(isequal(val,123)); netcdf.close(ncid); delete(fname) % attributes id fname = [tempname '-octave-netcdf-delete-attrib.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); gid = netcdf.getConstant('global'); netcdf.putAtt(ncid,gid,'toto',int8(123)); attnum = netcdf.inqAttID(ncid,gid,'toto'); name = netcdf.inqAttName(ncid,gid,attnum); assert(strcmp(name,'toto')) netcdf.close(ncid); delete(fname) % test one unlimited dimensions fname = [tempname '-octave-netcdf-unlimdim.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); dimID = netcdf.defDim(ncid,'time',netcdf.getConstant('NC_UNLIMITED')); unlimdimIDs = netcdf.inqUnlimDims(ncid); assert(dimID == unlimdimIDs); netcdf.close(ncid); delete(fname) % test netcdf_classic format fname = [tempname '-octave-netcdf-classic-model.nc']; mode = bitor(netcdf.getConstant('classic_model'),netcdf.getConstant('netcdf4')); ncid = netcdf.create(fname,mode); netcdf.close(ncid); info = ncinfo(fname); assert(strcmp(info.Format,'netcdf4_classic')); delete(fname); % test two unlimited dimensions fname = [tempname '-octave-netcdf-2unlimdim.nc']; mode = bitor(netcdf.getConstant('NC_CLOBBER'),netcdf.getConstant('NC_NETCDF4')); ncid = netcdf.create(fname,mode); dimID = netcdf.defDim(ncid,'time',netcdf.getConstant('NC_UNLIMITED')); dimID2 = netcdf.defDim(ncid,'time2',netcdf.getConstant('NC_UNLIMITED')); unlimdimIDs = netcdf.inqUnlimDims(ncid); assert(isequal(sort([dimID,dimID2]),sort(unlimdimIDs))); netcdf.close(ncid); delete(fname); % test fill mode fname = [tempname '-octave-netcdf-fill-mode.nc']; mode = bitor(netcdf.getConstant('NC_CLOBBER'),netcdf.getConstant('NC_NETCDF4')); ncid = netcdf.create(fname,mode); old_mode = netcdf.setFill(ncid,'nofill'); old_mode = netcdf.setFill(ncid,'nofill'); assert(old_mode == netcdf.getConstant('nofill')) netcdf.close(ncid); delete(fname); % deflate for 64bit_offset files fname = [tempname '-octave-netcdf-deflate.nc']; ncid = netcdf.create(fname,'64BIT_OFFSET'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','double',dimids); [shuffle,deflate,deflateLevel] = netcdf.inqVarDeflate(ncid,varid); assert(shuffle == 0) assert(deflate == 0) assert(deflateLevel == 0) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % deflate fname = [tempname '-octave-netcdf-deflate.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','double',dimids); netcdf.defVarDeflate(ncid,varid,true,true,9); [shuffle,deflate,deflateLevel] = netcdf.inqVarDeflate(ncid,varid); assert(shuffle) assert(deflate) assert(deflateLevel == 9) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % chunking - contiguous storage fname = [tempname '-octave-netcdf-chunking.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','double',dimids); netcdf.defVarChunking(ncid,varid,'contiguous'); [storage,chunksize] = netcdf.inqVarChunking(ncid,varid); assert(strcmp(storage,'contiguous')) assert(isempty(chunksize)) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % chunking - chunked storage fname = [tempname '-octave-netcdf-chunking.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','double',dimids); netcdf.defVarChunking(ncid,varid,'chunked',[3 4]); [storage,chunksize] = netcdf.inqVarChunking(ncid,varid); assert(strcmp(storage,'chunked')) assert(isequal(chunksize,[3 4])) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % checksum fname = [tempname '-octave-netcdf-checksum.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','double',dimids); checksum = netcdf.inqVarFletcher32(ncid,varid); assert(strcmp(checksum,'NOCHECKSUM')) netcdf.defVarFletcher32(ncid,varid,'fletcher32'); checksum = netcdf.inqVarFletcher32(ncid,varid); assert(strcmp(checksum,'FLETCHER32')) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % variable fill fname = [tempname '-octave-netcdf-fill.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','double',dimids); netcdf.defVarFill(ncid,varid,false,-99999.); [nofill,fillval] = netcdf.inqVarFill(ncid,varid); assert(isequal(nofill,false)) assert(fillval == -99999.) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % variable fill single fname = [tempname '-octave-netcdf-fill.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'single_var','float',dimids); netcdf.defVarFill(ncid,varid,false,single(-99999.)); [nofill,fillval] = netcdf.inqVarFill(ncid,varid); assert(isequal(nofill,false)) assert(fillval == -99999.) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % variable fill char fname = [tempname '-octave-netcdf-fill-char.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','char',dimids); netcdf.defVarFill(ncid,varid,false,'X'); [fill,fillval] = netcdf.inqVarFill(ncid,varid); assert(~fill) assert(fillval == 'X') netcdf.close(ncid); delete(fname); % check default state of fill fname = [tempname '-octave-netcdf-fill.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','double',dimids); [nofill,fillval] = netcdf.inqVarFill(ncid,varid); assert(isequal(nofill,false)) netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % create groups fname = [tempname '-octave-netcdf-groups.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); id1 = netcdf.defGrp(ncid,'group1'); id2 = netcdf.defGrp(ncid,'group2'); id3 = netcdf.defGrp(id1,'subgroup'); ids = netcdf.inqGrps(ncid); assert(isequal(sort([id1,id2]),sort(ids))); id4 = netcdf.inqNcid(ncid,'group1'); assert(id1 == id4) name = netcdf.inqGrpName(id3); assert(strcmp(name,'subgroup')) name = netcdf.inqGrpNameFull(id3); assert(strcmp(name,'/group1/subgroup')) parentid = netcdf.inqGrpParent(id3); assert(id1 == parentid); if 0 id3bis = netcdf.inqGrpFullNcid(ncid,'/group1/subgroup'); assert(id3 == id3bis); endif netcdf.close(ncid); %system(['ncdump -h ' fname]) delete(fname); % check rename dimension fname = [tempname '-octave-rename-dim.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimid = netcdf.defDim(ncid,'x',123); [name,len] = netcdf.inqDim(ncid,dimid); assert(strcmp(name,'x')); netcdf.renameDim(ncid,dimid,'y'); [name,len] = netcdf.inqDim(ncid,dimid); assert(strcmp(name,'y')); netcdf.close(ncid); delete(fname); % rename variable fname = [tempname '-octave-netcdf-rename-var.nc']; ncid = netcdf.create(fname,'NC_NETCDF4'); dimids = [netcdf.defDim(ncid,'x',123) netcdf.defDim(ncid,'y',12)]; varid = netcdf.defVar(ncid,'double_var','char',dimids); [varname] = netcdf.inqVar(ncid,varid); assert(strcmp(varname,'double_var')); netcdf.renameVar(ncid,varid,'doublev'); [varname] = netcdf.inqVar(ncid,varid); assert(strcmp(varname,'doublev')); netcdf.close(ncid); delete(fname); endfunction netcdf-1.0.20/inst/private/test_netcdf_constant.m0000644000000000000000000000270515205072111017001 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . % test netcdf constants function test_netcdf_constant() names = netcdf.getConstantNames(); assert(any(strcmp(names,'NC_WRITE'))); assert(netcdf.getConstant('NC_NOWRITE') == 0) assert(netcdf.getConstant('NC_WRITE') == 1) assert(netcdf.getConstant('NC_64BIT_OFFSET') == ... netcdf.getConstant('64BIT_OFFSET')) assert(netcdf.getConstant('NC_64BIT_OFFSET') == ... netcdf.getConstant('64bit_offset')) assert(isa(netcdf.getConstant('fill_byte'),'int8')) assert(isa(netcdf.getConstant('fill_ubyte'),'uint8')) assert(isa(netcdf.getConstant('fill_float'),'single')) failed = 0; try % should trow exception netcdf.getConstant('not_found') % should never be reached failed = 1; catch end_try_catch assert(~failed); endfunction netcdf-1.0.20/inst/private/test_netcdf_create.m0000644000000000000000000000162615205072111016414 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_netcdf_create fname = [tempname '-octave-netcdf.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); assert(strcmp(netcdf.inqFormat(ncid),'FORMAT_CLASSIC')); netcdf.close(ncid); delete(fname); endfunction netcdf-1.0.20/inst/private/test_netcdf_datatypes.m0000644000000000000000000000217415205072111017146 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_netcdf_datatypes() test_netcdf_type('byte','int8'); test_netcdf_type('ubyte','uint8'); test_netcdf_type('short','int16'); test_netcdf_type('ushort','uint16'); test_netcdf_type('int','int32'); test_netcdf_type('uint','uint32'); test_netcdf_type('int64','int64'); test_netcdf_type('uint64','uint64'); test_netcdf_type('double','double'); test_netcdf_type('float','single'); test_netcdf_type('char','char'); endfunction netcdf-1.0.20/inst/private/test_netcdf_high_level_interface.m0000644000000000000000000000714715205072111021303 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . fname = [tempname '-octave-netcdf.nc']; nccreate(fname,'temp','Dimensions',{'lon',10,'lat',20}); nccreate(fname,'salt','Dimensions',{'lon',10,'lat',20}); nccreate(fname,'u','Dimensions',{'lon','lat'}); u = randn(10,20); ncwrite(fname,'u',u); % for octave prior to 3.8.0 if isempty(which('isequaln')) isequaln = @(x,y) isequalwithequalnans(x,y); endif u2 = ncread(fname,'u'); assert(isequaln(u,u2)); u2 = ncread(fname,'u',[10 5],[inf inf],[1 1]); assert(isequaln(u(10:end,5:end),u2)); ncwriteatt(fname,'temp','units','degree Celsius'); assert(strcmp(ncreadatt(fname,'temp','units'),'degree Celsius')); ncwriteatt(fname,'temp','range',[0 10]); assert(isequal(ncreadatt(fname,'temp','range'),[0 10])); ncwriteatt(fname,'temp','float_range',single([0 10])); assert(isequal(ncreadatt(fname,'temp','float_range'),[0 10])); ncwriteatt(fname,'temp','int_range',int32([0 10])); assert(isequal(ncreadatt(fname,'temp','int_range'),[0 10])); info = ncinfo(fname); assert(length(info.Variables) == 3) assert(strcmp(info.Variables(1).Name,'temp')); assert(isequal(info.Variables(1).Size,[10 20])); delete(fname); nccreate(fname,'temp','Dimensions',{'lon',10,'lat',20},'Format','64bit'); delete(fname); nccreate(fname,'temp','Dimensions',{'lon',10,'lat',20},'Format','classic'); info = ncinfo(fname); assert(strcmp(info.Format,'classic')); delete(fname); % netcdf4 nccreate(fname,'temp','Dimensions',{'lon',10,'lat',20},'Format','netcdf4'); ncwriteatt(fname,'temp','uint_range',uint32([0 10])); assert(isequal(ncreadatt(fname,'temp','uint_range'),[0 10])); info = ncinfo(fname); assert(strcmp(info.Format,'netcdf4')); delete(fname) % scalar variable nccreate(fname,'temp','Format','netcdf4','Datatype','double'); ncwrite(fname,'temp',123); assert(ncread(fname,'temp') == 123) delete(fname) % test unlimited dimension with nccreate fname = [tempname '-octave-netcdf.nc']; nccreate(fname,'temp','Dimensions',{'lon',10,'lat',inf}); %system(['ncdump -h ' fname]) info = ncinfo(fname); assert(~info.Dimensions(1).Unlimited) assert(info.Dimensions(2).Unlimited) delete(fname) % test double with _FillValue fname = [tempname '-octave-netcdf.nc']; fv = 99999.; nccreate(fname,'flag','Dimensions',{'lon',10,'lat',10},'Datatype','double',... 'FillValue',fv); %system(['ncdump -h ' fname]) data = zeros(10,10); data(1,2) = fv; ncid = netcdf.open(fname,'NC_WRITE'); varid = netcdf.inqVarID(ncid, 'flag'); netcdf.putVar(ncid,varid,data); netcdf.close(ncid) data2 = ncread(fname,'flag'); data(data == fv) = NaN; assert(isequaln(data,data2)) delete(fname) % test char with _FillValue fname = [tempname '-octave-netcdf.nc']; fv = '*'; nccreate(fname,'flag','Dimensions',{'lon',10,'lat',10},'Datatype','char',... 'FillValue',fv); data = repmat('.',[10 10]); data(1,2) = fv; ncid = netcdf.open(fname,'NC_WRITE'); varid = netcdf.inqVarID(ncid, 'flag'); netcdf.putVar(ncid,varid,data); netcdf.close(ncid) data2 = ncread(fname,'flag'); assert(isequal(data,data2)) delete(fname) netcdf-1.0.20/inst/private/test_netcdf_low_level_interface.m0000644000000000000000000001243215205072111021156 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_netcdf_low_level_interface % 2 dimensions fname = [tempname '-octave-netcdf.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); assert(strcmp(netcdf.inqFormat(ncid),'FORMAT_CLASSIC')); n = 10; m = 5; dimid_lon = netcdf.defDim(ncid,'lon',m); dimid = netcdf.defDim(ncid,'time',n); varidd = netcdf.defVar(ncid,'double_var','double',[dimid_lon,dimid]); varid = netcdf.defVar(ncid,'byte_var','byte',[dimid]); varidf = netcdf.defVar(ncid,'float_var','float',[dimid]); varidi = netcdf.defVar(ncid,'int_var','int',[dimid]); varids = netcdf.defVar(ncid,'short_var','short',[dimid]); assert(varidd == netcdf.inqVarID(ncid,'double_var')) [numdims, numvars, numglobalatts, unlimdimID] = netcdf.inq(ncid); assert(numvars == 5) [varname,xtype,dimids,natts] = netcdf.inqVar(ncid,varidd); assert(strcmp(varname,'double_var')); [dimname,len] = netcdf.inqDim(ncid,dimid); assert(len == n); assert(strcmp(dimname,'time')); types = {'double','float','byte','short','int'}; for i=1:length(types) vid{i} = netcdf.defVar(ncid,[types{i} '_variable'],types{i},[dimid_lon,dimid]); end netcdf.endDef(ncid) z = randn(m,n); netcdf.putVar(ncid,varidd,z); varf = randn(n,1); netcdf.putVar(ncid,varidf,varf); vari = floor(randn(n,1)); netcdf.putVar(ncid,varidi,vari); netcdf.putVar(ncid,varids,[1:n]) z2 = netcdf.getVar(ncid,varidd); assert(all(all(abs(z2 - z) < 1e-5))) z2 = netcdf.getVar(ncid,varidd,[0 0]); assert(z2 == z(1,1)) z2 = netcdf.getVar(ncid,varidd,[2 2],[3 5]); assert(isequal(z2,z(3:5,3:7))) z2 = netcdf.getVar(ncid,varidd,[2 2],[3 4],[1 2]); assert(isequal(z2,z(3:5,3:2:9))) netcdf.putVar(ncid,varidd,[0 0],123.); z(1,1) = 123; z2 = netcdf.getVar(ncid,varidd); assert(isequal(z,z2)) netcdf.putVar(ncid,varidd,[2 2],[3 3],ones(3,3)); z(3:5,3:5) = 1; z2 = netcdf.getVar(ncid,varidd); assert(isequal(z,z2)) netcdf.putVar(ncid,varidd,[0 0],[3 5],[2 2],zeros(3,5)); z(1:2:5,1:2:9) = 0; z2 = netcdf.getVar(ncid,varidd); assert(isequal(z,z2)) z2 = netcdf.getVar(ncid,varidf); assert(all(z2 - varf < 1e-5)) vari2 = netcdf.getVar(ncid,varidi); assert(all(vari2 == vari)) netcdf.close(ncid); delete(fname); % test with different dimensions for i = 1:5 nc_test_ndims(i); endfor endfunction function nc_test_ndims(ndims) fname = [tempname '-octave-netcdf.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); sz = ones(1,ndims); dimids = ones(1,ndims); for i = 1:ndims sz(i) = 10+i; dimids(i) = netcdf.defDim(ncid,sprintf('dim%g',i),sz(i)); endfor varid = netcdf.defVar(ncid,'double_var','double',dimids); [varname,xtype,dimids,natts] = netcdf.inqVar(ncid,varid); assert(strcmp(varname,'double_var')); for i = 1:ndims [dimname,len] = netcdf.inqDim(ncid,dimids(i)); assert(len == sz(i)); assert(strcmp(dimname,sprintf('dim%g',i))); endfor netcdf.endDef(ncid) if ndims == 1 z = randn(sz,1); else z = randn(sz); endif netcdf.putVar(ncid,varid,z); z2 = netcdf.getVar(ncid,varid); assert(isequal(z,z2)) z2 = netcdf.getVar(ncid,varid,zeros(ndims,1)); assert(z2 == z(1)) start = 2 * ones(1,ndims); count = 5 * ones(1,ndims); z2 = netcdf.getVar(ncid,varid,start,count); idx = scs(start,count); assert(isequal(z2,z(idx{:}))) start = 2 * ones(1,ndims); count = 5 * ones(1,ndims); stride = 2 * ones(1,ndims); z2 = netcdf.getVar(ncid,varid,start,count,stride); idx = scs(start,count,stride); assert(isequal(z2,z(idx{:}))) % put with start start = zeros(1,ndims); netcdf.putVar(ncid,varid,start,123.); z(1) = 123; z2 = netcdf.getVar(ncid,varid); assert(isequal(z,z2)) % put with start and count start = 2 * ones(1,ndims); count = 5 * ones(1,ndims); if ndims == 1 data = ones(count,1); else data = ones(count); endif netcdf.putVar(ncid,varid,start,count,data); idx = scs(start,count); z(idx{:}) = 1; z2 = netcdf.getVar(ncid,varid); assert(isequal(z,z2)) % put with start, count and stride start = 2 * ones(1,ndims); count = 5 * ones(1,ndims); stride = 2 * ones(1,ndims); if ndims == 1 data = zeros(count,1); else data = zeros(count); endif netcdf.putVar(ncid,varid,start,count,stride,data); idx = scs(start,count,stride); z (idx{:}) = 0; z2 = netcdf.getVar(ncid,varid); assert(isequal(z,z2)) netcdf.close(ncid); delete(fname); endfunction function idx = scs(start,count,stride) idx = cell(length(start),1); if nargin == 2 stride = ones(length(start),1); endif for i = 1:length(start) idx{i} = start(i) + 1 + stride(i) * [0:count(i)-1]; endfor endfunction netcdf-1.0.20/inst/private/test_netcdf_ncwriteschema.m0000644000000000000000000000255515205072111020007 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . fname = [tempname '-octave-netcdf-scheme-unlim.nc']; clear s s.Name = '/'; s.Format = 'classic'; s.Dimensions(1).Name = 'lon'; s.Dimensions(1).Length = 20; s.Dimensions(2).Name = 'lat'; s.Dimensions(2).Length = 10; s.Attributes(1).Name = 'institution'; s.Attributes(1).Value = 'GHER, ULg'; s.Variables(1).Name = 'temp'; s.Variables(1).Dimensions = s.Dimensions; s.Variables(1).Datatype = 'double'; s.Variables(1).Attributes(1).Name = 'long_name'; s.Variables(1).Attributes(1).Value = 'temperature'; ncwriteschema(fname,s); info = ncinfo(fname); assert(strcmp(info.Attributes(1).Name,s.Attributes(1).Name)) assert(strcmp(info.Attributes(1).Value,s.Attributes(1).Value)) delete(fname); netcdf-1.0.20/inst/private/test_netcdf_ncwriteschema_chunking.m0000644000000000000000000000272615205072111021675 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . fname = [tempname '-octave-netcdf-scheme-chunk.nc']; clear s s.Name = '/'; s.Format = 'netcdf4'; s.Dimensions(1).Name = 'lon'; s.Dimensions(1).Length = 20; s.Dimensions(2).Name = 'lat'; s.Dimensions(2).Length = 10; s.Attributes(1).Name = 'institution'; s.Attributes(1).Value = 'GHER, ULg'; s.Variables(1).Name = 'temp'; s.Variables(1).Dimensions = s.Dimensions; s.Variables(1).Datatype = 'double'; s.Variables(1).Attributes(1).Name = 'long_name'; s.Variables(1).Attributes(1).Value = 'temperature'; s.Variables(1).ChunkSize = [2 3]; ncwriteschema(fname,s); info = ncinfo(fname); assert(strcmp(info.Attributes(1).Name,s.Attributes(1).Name)) assert(strcmp(info.Attributes(1).Value,s.Attributes(1).Value)) assert(isequal(info.Variables(1).ChunkSize,s.Variables(1).ChunkSize)); delete(fname); netcdf-1.0.20/inst/private/test_netcdf_ncwriteschema_group.m0000644000000000000000000000444415205072111021222 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . fname = [tempname '-octave-netcdf-scheme-group.nc']; clear s s.Name = '/'; s.Format = 'netcdf4'; s.Dimensions(1).Name = 'lon'; s.Dimensions(1).Length = 20; s.Dimensions(2).Name = 'lat'; s.Dimensions(2).Length = 10; s.Attributes(1).Name = 'institution'; s.Attributes(1).Value = 'GHER, ULg'; s.Variables(1).Name = 'temp_diff'; s.Variables(1).Dimensions = s.Dimensions; s.Variables(1).Datatype = 'double'; s.Variables(1).Attributes(1).Name = 'long_name'; s.Variables(1).Attributes(1).Value = 'temperature'; s.Groups(1).Name = 'forecast'; s.Groups(1).Variables(1).Name = 'temp'; s.Groups(1).Variables(1).Dimensions = s.Dimensions; s.Groups(1).Variables(1).Datatype = 'double'; s.Groups(1).Variables(1).Attributes(1).Name = 'long_name'; s.Groups(1).Variables(1).Attributes(1).Value = 'temperature'; s.Groups(1).Attributes(1).Name = 'institution'; s.Groups(1).Attributes(1).Value = 'ULg'; s.Groups(2) = s.Groups(1); s.Groups(2).Name = 'analysis'; ncwriteschema(fname,s); %system(['ncdump -h ' fname]) info = ncinfo(fname); assert(strcmp(info.Attributes(1).Name,s.Attributes(1).Name)) assert(strcmp(info.Attributes(1).Value,s.Attributes(1).Value)) assert(strcmp(s.Groups(1).Name,info.Groups(1).Name)) z = randn(20,10); ncwrite(fname,'/forecast/temp',z); z2 = ncread(fname,'/forecast/temp'); assert(isequal(z,z2)) ginfo = ncinfo(fname,'forecast'); assert(strcmp(ginfo.Name,'forecast')); % read global attribute of root group val = ncreadatt(fname,'/','institution'); assert(strcmp(val,'GHER, ULg')); % read global attribute of group forecast val = ncreadatt(fname,'/forecast','institution'); assert(strcmp(val,'ULg')); delete(fname); netcdf-1.0.20/inst/private/test_netcdf_ncwriteschema_unlim.m0000644000000000000000000000276515205072111021216 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . fname = [tempname '-octave-netcdf-scheme-unlim.nc']; clear s s.Name = '/'; s.Format = 'classic'; s.Dimensions(1).Name = 'lon'; s.Dimensions(1).Length = 20; s.Dimensions(2).Name = 'lat'; s.Dimensions(2).Length = 10; s.Dimensions(3).Name = 'time'; s.Dimensions(3).Length = Inf; %s.Dimensions(3).Unlimited = true; s.Attributes(1).Name = 'institution'; s.Attributes(1).Value = 'GHER, ULg'; s.Variables(1).Name = 'temp'; s.Variables(1).Dimensions = s.Dimensions; s.Variables(1).Datatype = 'double'; s.Variables(1).Attributes(1).Name = 'long_name'; s.Variables(1).Attributes(1).Value = 'temperature'; ncwriteschema(fname,s); info = ncinfo(fname); assert(strcmp(info.Attributes(1).Name,s.Attributes(1).Name)) assert(strcmp(info.Attributes(1).Value,s.Attributes(1).Value)) assert(info.Dimensions(3).Unlimited); delete(fname); netcdf-1.0.20/inst/private/test_netcdf_scalar_variable.m0000644000000000000000000000164715205072111020266 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_netcdf_scalar_variable() fname = [tempname '-octave-netcdf.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); varidd_scalar = netcdf.defVar(ncid,'double_scalar','double',[]); netcdf.close(ncid); delete(fname); endfunction netcdf-1.0.20/inst/private/test_netcdf_type.m0000644000000000000000000000431215205072111016125 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_netcdf_type(nctype,octtype) m = 5; n = 10; fname = [tempname '-octave-netcdf- ' nctype '.nc']; mode = bitor(netcdf.getConstant('NC_CLOBBER'),... netcdf.getConstant('NC_NETCDF4')); ncid = netcdf.create(fname,mode); dimids = [netcdf.defDim(ncid,'lon',m) ... netcdf.defDim(ncid,'time',n)]; varid = netcdf.defVar(ncid,'variable',nctype,dimids); netcdf.endDef(ncid) if strcmp(octtype,'char') z = char(floor(26*rand(m,n)) + 65); testvals = 'a'; testvalv = 'this is a name'; else z = zeros(m,n,octtype); z(:) = randn(m,n); testvals = zeros(1,1,octtype); testvals(:) = rand(1,1); testvalv = zeros(1,5,octtype); testvalv(:) = rand(size(testvalv)); endif netcdf.putVar(ncid,varid,z); z2 = netcdf.getVar(ncid,varid); assert(isequal(z,z2)) netcdf.putAtt(ncid,varid,'scalar_attribute',testvals); val = netcdf.getAtt(ncid,varid,'scalar_attribute'); assert(isequal(val,testvals)); assert(strcmp(class(val),octtype)) [xtype,len] = netcdf.inqAtt(ncid,varid,'scalar_attribute'); assert(xtype == netcdf.getConstant(nctype)) assert(len == numel(testvals)); netcdf.putAtt(ncid,varid,'vector_attribute',testvalv); val = netcdf.getAtt(ncid,varid,'vector_attribute'); assert(isequal(val,testvalv)); assert(strcmp(class(val),octtype)) [xtype,len] = netcdf.inqAtt(ncid,varid,'vector_attribute'); assert(xtype == netcdf.getConstant(nctype)) assert(len == numel(testvalv)); netcdf.close(ncid); delete(fname); endfunction netcdf-1.0.20/inst/private/test_netcdf_unlim.m0000644000000000000000000000201215205072111016263 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . % 2 dimensions fname = [tempname '-octave-netcdf.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); dimid = netcdf.defDim(ncid,'time',0); varidd = netcdf.defVar(ncid,'time','double',[dimid]); netcdf.close(ncid) ncid = netcdf.open(fname,'NC_NOWRITE'); varid = netcdf.inqVarID(ncid, 'time'); x = netcdf.getVar(ncid,varid); netcdf.close(ncid) netcdf-1.0.20/inst/private/test_netcdf_user_types.m0000644000000000000000000000527715205072111017361 0ustar00%% Copyright (C) 2022 John Donoghue %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_netcdf_user_types() fname = [tempname '-octave-netcdf.nc']; ncid = netcdf.create(fname,netcdf.getConstant('NETCDF4')); my_dtype_id = netcdf.defVlen(ncid,"mytype_dtype", 'double'); [dtype_name, dtype_bsize, dtype_typeid] = netcdf.inqVlen(ncid, my_dtype_id); assert(dtype_name, 'mytype_dtype'); #assert(dtype_bsize, 16); assert(dtype_typeid, netcdf.getConstant("NC_DOUBLE")); [dtype_name, dtype_bsize, dtype_typeid, dtype_nfields, dtype_classid] = netcdf.inqUserType(ncid, my_dtype_id); assert(dtype_name, 'mytype_dtype'); #assert(dtype_bsize, 16); assert(dtype_typeid, netcdf.getConstant("NC_DOUBLE")); assert(dtype_nfields, 0); assert(dtype_classid, netcdf.getConstant("NC_VLEN")); my_stype_id = netcdf.defVlen(ncid,"mytype_stype", netcdf.getConstant("NC_USHORT")); [stype_name, stype_bsize, stype_typeid] = netcdf.inqVlen(ncid, my_stype_id); assert(stype_name, 'mytype_stype'); #assert(stype_bsize, 2); assert(stype_typeid, netcdf.getConstant("NC_USHORT")); # create a variable dimid = netcdf.defDim(ncid,'m',5); varid = netcdf.defVar(ncid,'myarray', my_dtype_id, dimid); netcdf.defVarFill(ncid, varid, false, -999); netcdf.putAtt(ncid, varid, "myattr", 1) netcdf.endDef(ncid); # get var info [varname vartype vardimid varattr] = netcdf.inqVar(ncid,varid); assert(varname, "myarray"); assert(vardimid, dimid); assert(vartype, my_dtype_id); netcdf.putVar(ncid, varid, {0, [0.1,0.2],[3,0,4.0,5.0,6.0]}); data = netcdf.getVar(ncid,varid); assert(iscell(data)); assert(length(data), 5); assert(data{1}, [0]); assert(data{2}, [0.1,0.2]); assert(data{3}, [3,0,4.0,5.0,6.0]); assert(data{4}, -999); netcdf.close(ncid); # ncinfo doesnt error a = ncinfo(fname); assert(a.Variables(1).Name, "myarray"); assert(a.Variables(1).Size, 5); assert(a.Variables(1).FillValue, -999); # attr 1 is the fill value, 2nd is my added one assert(a.Variables(1).Attributes(2).Name, "myattr"); assert(a.Variables(1).Attributes(2).Value, 1); delete(fname); endfunction netcdf-1.0.20/inst/private/test_scalar_variable.m0000644000000000000000000000164015205072111016734 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . function test_scalar_variable() fname = [tempname '-octave-netcdf.nc']; ncid = netcdf.create(fname,'NC_CLOBBER'); varidd_scalar = netcdf.defVar(ncid,'double_scalar','double',[]); netcdf.close(ncid); delete(fname); endfunction netcdf-1.0.20/inst/test_netcdf.m0000644000000000000000000000355415205072111013421 0ustar00%% Copyright (C) 2013-2022 Alexander Barth %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 3 of the License, or %% (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see . ## -*- texinfo -*- ## @deftypefn {} {} test_netcdf ## Function to do a basic test of the netcdf interface ## @end deftypefn function test_netcdf() import_netcdf tests = {'test_netcdf_constant',... 'test_netcdf_create'... 'test_netcdf_low_level_interface'... 'test_netcdf_unlim',... 'test_netcdf_datatypes',... 'test_netcdf_scalar_variable',... 'test_netcdf_attributes',... 'test_netcdf_high_level_interface',... 'test_netcdf_ncwriteschema',... 'test_netcdf_ncwriteschema_unlim',... 'test_netcdf_ncwriteschema_chunking',... 'test_netcdf_ncwriteschema_group',... 'test_netcdf_user_types',... 'bug_47014'... }; maxlen = max(cellfun(@(s) length(s),tests)); libver = netcdf.inqLibVers(); fprintf('Using NetCDF library version "%s"\n',libver) for iindex=1:length(tests); dots = repmat('.',1,maxlen - length(tests{iindex})); fprintf('run %s%s ',tests{iindex},dots); try eval(tests{iindex}); disp(' OK '); catch disp(' FAIL '); disp(lasterr) end_try_catch endfor endfunction %!test %! fprintf ("\n"); %! test_netcdf (); netcdf-1.0.20/octave-netcdf.metainfo.xml0000644000000000000000000000202215205072111015016 0ustar00 octave-netcdf www.octave.org-octave.desktop NetCDF Toolkit Octave NetCDF toolkit

Toolkit for Network Common Form (NetCDF) File I/O.

 NetCDF scientific https://gnu-octave.github.io/octave-netcdf/ https://github.com/gnu-octave/octave-netcdf/issues GPL-3.0+ Octave-Forge Community octave-maintainers@gnu.org FSFAP netcdf-1.0.20/src/0000755000000000000000000000000015205072111010544 5ustar00netcdf-1.0.20/src/Makefile.in0000644000000000000000000000175215205072111012616 0ustar00 SHELL = @SHELL@ AWK = @AWK@ AWK ?= awk MKOCTFILE = @MKOCTFILE@ -v NC_CONFIG = @NC_CONFIG@ %.oct: %.cc ; $(MKOCTFILE) $< NCHEADER=$(shell $(NC_CONFIG) --includedir)/netcdf.h NETCDF_CPPFLAGS=@NETCDF_CPPFLAGS@ NETCDF_LIBS=@NETCDF_LIBS@ SRC = __netcdf__.cc all: __netcdf__.oct ../PKG_ADD netcdf_constants.h: $(info generating netcdf_constants.h) @if [ -f $(NCHEADER) ]; then \ $(AWK) -f netcdf_constants.awk $(NCHEADER) > netcdf_constants.h; \ elif [ -f /usr/include/netcdf.h ]; then \ $(AWK) -f netcdf_constants.awk /usr/include/netcdf.h > netcdf_constants.h; \ else \ echo >&2 "Couldnt find netcdf.h"; \ false; \ fi; clean: rm -f __netcdf__.o __netcdf__.oct netcdf_constants.h distclean: clean -rm -f oct-alt-includes.h -rm -f config.status config.log config.h -rm -f Makefile realclean: distclean rm -f ../PKG_ADD ../PKG_DEL __netcdf__.oct: $(SRC) netcdf_constants.h $(MKOCTFILE) $(NETCDF_CPPFLAGS) $(SRC) $(NETCDF_LIBS) ../PKG_ADD: $(SRC) $(shell sh ./PKG_ADD.sh) netcdf-1.0.20/src/PKG_ADD.sh0000644000000000000000000000254515205072111012177 0ustar00#!/bin/sh # Copyright (C) 2013-2022 Alexander Barth # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; If not, see . if [ "x$AWK" = "x" ]; then AWK=awk fi netcdf_functions=$($AWK -F'[(,]' '/DEFUN_DLD/ { print $2 } ' __netcdf__.cc) outfile_add=../PKG_ADD outfile_del=../PKG_DEL rm -f $outfile_add $outfile_del echo '% File automatically generated by PKG_ADD.sh' > $outfile_add for i in $netcdf_functions; do #echo ${i#netcdf_} cat >> $outfile_add < $outfile_del for i in $netcdf_functions; do #echo ${i#netcdf_} cat >> $outfile_del < // // This program is free software; you can redistribute it and/or modify it under // the terms of the GNU General Public License as published by the Free Software // Foundation; either version 3 of the License, or (at your option) any later // version. // // This program is distributed in the hope that it will be useful, but WITHOUT // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or // FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more // details. // // You should have received a copy of the GNU General Public License along with // this program; if not, see . #include #include #include #include #include #include #include #include #include #include "config.h" // Octave constructor to hold an array of ints #define NETCDF_INT_ARRAY int32NDArray static std::map netcdf_constants; void init() { #include "netcdf_constants.h" } int check_err(int status) { if (status != NC_NOERR) error("%s", nc_strerror(status)); return status; } // convert name to upper-case and add "NC_" prefix if it is missing std::string normalize_ncname(std::string name) { std::string prefix = "NC_"; std::string ncname = name; // to upper case std::transform(ncname.begin(), ncname.end(),ncname.begin(), ::toupper); // add prefix if it is missing if (ncname.substr(0, prefix.size()) != prefix) { ncname = prefix + ncname; } return ncname; } octave_value netcdf_get_constant(octave_value ov) { if (netcdf_constants.empty()) { init(); } if (ov.is_scalar_type()) { return ov.scalar_value(); } std::string name = ov.string_value(); name = normalize_ncname(name); std::map::const_iterator cst = netcdf_constants.find(name); if (cst != netcdf_constants.end ()) { return cst->second; } else { error("unknown netcdf constant: %s",name.c_str()); return octave_value(); } } size_t to_size_t(octave_value ov) { size_t sz; sz = static_cast(ov.uint64_scalar_value()); return sz; } void to_size_t_vector(octave_value ov, int len, size_t *vec) { uint64NDArray tmp = ov.uint64_array_value(); for (int i=0; i(tmp(len-i-1)); } } void to_ptrdiff_t_vector(octave_value ov, int len, ptrdiff_t *vec) { int64NDArray tmp = ov.int64_array_value(); for (int i=0; i(tmp(len-i-1)); } } void start_count_stride(int ncid, int varid, octave_value_list args,int len, int ndims, size_t* start,size_t* count,ptrdiff_t* stride) { OCTAVE_LOCAL_BUFFER (int, dimids, ndims); check_err(nc_inq_vardimid (ncid, varid, dimids)); // default values for start, count and stride // i.e. all variable is loaded for (int i=0; i 2) { if (args(2).numel() != ndims) { error("number of elements of argument %s should match the number " "of dimension of the netCDF variable", "start"); } to_size_t_vector(args(2),ndims,start); // if start is specified, the default for count is 1 (how odd!) for (int i=0; i 3) { if (args(3).numel() != ndims) { error("number of elements of argument %s should match the number " "of dimension of the netCDF variable", "count"); } to_size_t_vector(args(3),ndims,count); } // stride argument if (len > 4) { if (args(4).numel() != ndims) { error("number of elements of argument %s should match the number " "of dimension of the netCDF variable", "stride"); } to_ptrdiff_t_vector(args(4),ndims,stride); } } DEFUN_DLD(netcdf_getConstant, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{value} =} netcdf_getConstant(@var{name}) \n\ Returns the value of a NetCDF constant called @var{name}.\n\ @seealso{netcdf_getConstantNames}\n\ @end deftypefn") { if (args.length() != 1) { print_usage (); return octave_value(); } return netcdf_get_constant(args(0)); } DEFUN_DLD(netcdf_getConstantNames, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{value} =} netcdf_getConstantNames() \n\ Returns a list of all constant names.\n\ @end deftypefn\n\ @seealso{netcdf_getConstant}\n") { if (args.length() != 0) { print_usage (); return octave_value(); } if (netcdf_constants.empty()) { init(); } Cell c = Cell (dim_vector(1,netcdf_constants.size())); int i = 0; for (std::map::const_iterator p = netcdf_constants.begin (); p != netcdf_constants.end (); p++) { c(i++) = octave_value(p->first); } return octave_value(c); } DEFUN_DLD(netcdf_inqLibVers, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{vers} =} netcdf_inqLibVers() \n\ Returns the version of the NetCDF library.\n\ @end deftypefn\n\ @seealso{netcdf_open}\n") { if (args.length() != 0) { print_usage (); return octave_value (); } return octave_value(std::string(nc_inq_libvers())); } DEFUN_DLD(netcdf_setDefaultFormat, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{old_format} =} netcdf_setDefaultFormat(@var{format}) \n\ Sets the default format of the NetCDF library and returns the previous default format (as a numeric value). @var{format} can be \n\ \"format_classic\", \"format_64bit\", \"format_netcdf4\" or \"format_netcdf4_classic\". \n\ @end deftypefn\n\ @seealso{netcdf_open}\n") { if (args.length() != 1) { print_usage (); return octave_value (); } int format = netcdf_get_constant(args(0)).int_value(); int old_format; check_err(nc_set_default_format(format, &old_format)); return octave_value(old_format); } // int nc_set_chunk_cache(size_t size, size_t nelems, float preemption); DEFUN_DLD(netcdf_setChunkCache, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_setChunkCache(@var{size}, @var{nelems}, @var{preemption}) \n\ Sets the default chunk cache settings in the HDF5 library. The settings applies to all files which are subsequently opened or created.\n\ @end deftypefn\n\ @seealso{netcdf_getChunkCache}\n") { if (args.length() != 3) { print_usage (); return octave_value(); } size_t size = to_size_t(args(0)); size_t nelems = to_size_t(args(1)); float preemption = args(2).scalar_value(); check_err(nc_set_chunk_cache(size, nelems, preemption)); return octave_value(); } // int nc_get_chunk_cache(size_t *sizep, size_t *nelemsp, float *preemptionp); DEFUN_DLD(netcdf_getChunkCache, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{size}, @var{nelems}, @var{preemption}] =} netcdf_getChunkCache() \n\ Gets the default chunk cache settings in the HDF5 library. \n\ @end deftypefn\n\ @seealso{netcdf_setChunkCache}\n") { if (args.length() != 0) { print_usage (); return octave_value (); } size_t size; size_t nelems; float preemption; check_err(nc_get_chunk_cache(&size, &nelems, &preemption)); octave_value_list retval; retval(0) = octave_value(size); retval(1) = octave_value(nelems); retval(2) = octave_value(preemption); return retval; } DEFUN_DLD(netcdf_create, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{ncid} =} netcdf_create(@var{filename},@var{mode}) \n\ Creates the file named @var{filename} in the mode @var{mode} which can have the \n\ following values: \n\ \"clobber\" (overwrite existing files), \n\ \"noclobber\" (prevent to overwrite existing files) \n\ \"64bit_offset\" (use the 64bit-offset format), \n\ \"netcdf4\" (use the NetCDF4, i.e. HDF5 format) or \n\ \"share\" (concurrent reading of the dataset). \n\ @var{mode} can also be the numeric value return by netcdf_getConstant. In the later-case it can be combined with a bitwise-or. \n\ @end deftypefn\n\ @subsubheading Example\n\ @example \n\ mode = bitor(netcdf.getConstant(\"classic_model\"), ...\n\ netcdf.getConstant(\"netcdf4\")); \n\ ncid = netcdf.create(\"test.nc\",mode); \n\ @end example \n\ @seealso{netcdf_close}\n") { if (args.length() != 2) { print_usage (); return octave_value (); } std::string filename = args(0).string_value(); int mode = netcdf_get_constant(args(1)).int_value(); int ncid; check_err(nc_create(filename.c_str(), mode, &ncid)); return octave_value(ncid); } DEFUN_DLD(netcdf_open, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{ncid} =} netcdf_open(@var{filename},@var{mode}) \n\ Opens the file named @var{filename} in the mode @var{mode}.\n\ @end deftypefn\n\ @seealso{netcdf_close}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } std::string filename = args(0).string_value(); int mode = netcdf_get_constant(args(1)).int_value(); int ncid; check_err(nc_open(filename.c_str(), mode, &ncid)); return octave_value(ncid); } DEFUN_DLD(netcdf_abort, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_abort(@var{ncid}) \n\ Aborts all changes since the last time the dataset entered in define mode.\n\ @end deftypefn\n\ @seealso{netcdf_reDef}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); check_err(nc_abort(ncid)); return octave_value(); } DEFUN_DLD(netcdf_sync, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_sync(@var{ncid}) \n\ Writes all changes to the disk and leaves the file open.\n\ @end deftypefn\n\ @seealso{netcdf_close}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); check_err(nc_sync(ncid)); return octave_value(); } DEFUN_DLD(netcdf_setFill, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{old_mode} =} netcdf_setFill(@var{ncid},@var{fillmode}) \n\ Change the fill mode (@var{fillmode}) of the data set @var{ncid}. The previous value of the fill mode is returned. @var{fillmode} can be either \"fill\" or \"nofill\".\n\ @end deftypefn\n\ @seealso{netcdf_open}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int fillmode = netcdf_get_constant(args(1)).int_value(); int old_mode; check_err (nc_set_fill (ncid, fillmode, &old_mode)); return octave_value(old_mode); } //int nc_inq (int ncid, int *ndimsp, int *nvarsp, int *ngattsp, // int *unlimdimidp); DEFUN_DLD(netcdf_inq, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{ndims},@var{nvars},@var{ngatts},@var{unlimdimid}] =} netcdf_inq(@var{ncid}) \n\ Return the number of dimension (@var{ndims}), the number of variables (@var{nvars}), the number of global attributes (@var{ngatts}) and the id of the unlimited dimension (@var{unlimdimid}). \n\ If no unlimited dimension is declared -1 is returned. For NetCDF4 files, one should use \n\ the function netcdf_inqUnlimDims as multiple unlimite dimension exists. \n\ @end deftypefn\n\ @seealso{netcdf_inqUnlimDims}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int ndims, nvars, ngatts, unlimdimid; octave_value_list retval; check_err(nc_inq(ncid,&ndims,&nvars,&ngatts,&unlimdimid)); retval(0) = octave_value(ndims); retval(1) = octave_value(nvars); retval(2) = octave_value(ngatts); retval(3) = octave_value(unlimdimid); return retval; } // int nc_inq_unlimdims(int ncid, int *nunlimdimsp, int *unlimdimidsp); DEFUN_DLD(netcdf_inqUnlimDims, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{unlimdimids} =} netcdf_inqUnlimDims(@var{ncid}) \n\ Return the id of all unlimited dimensions of the NetCDF file @var{ncid}.\n\ @end deftypefn\n\ @seealso{netcdf_inq}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int nunlimdims; check_err(nc_inq_unlimdims(ncid, &nunlimdims, NULL)); OCTAVE_LOCAL_BUFFER(int,tmp,nunlimdims); NETCDF_INT_ARRAY unlimdimids = NETCDF_INT_ARRAY(dim_vector(1,nunlimdims)); check_err(nc_inq_unlimdims(ncid, &nunlimdims, tmp)); for (int i=0; i < nunlimdims; i++) { unlimdimids(i) = tmp[i]; } return octave_value(unlimdimids); } // int nc_inq_format (int ncid, int *formatp); DEFUN_DLD(netcdf_inqFormat, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{format} =} netcdf_inqFormat(@var{ncid}) \n\ Return the NetCDF format of the dataset @var{ncid}.\n\ Format might be one of the following \n\ \"FORMAT_CLASSIC\", \"FORMAT_64BIT\", \"FORMAT_NETCDF4\" or \"FORMAT_NETCDF4_CLASSIC\" \n\ @end deftypefn\n\ @seealso{netcdf_inq}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int format; check_err(nc_inq_format(ncid, &format)); if (format == NC_FORMAT_CLASSIC) { return octave_value("FORMAT_CLASSIC"); } if (format == NC_FORMAT_64BIT) { return octave_value("FORMAT_64BIT"); } if (format == NC_FORMAT_NETCDF4) { return octave_value("FORMAT_NETCDF4"); } return octave_value("FORMAT_NETCDF4_CLASSIC"); } // int nc_def_dim (int ncid, const char *name, size_t len, int *dimidp); DEFUN_DLD(netcdf_defDim, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{dimid} =} netcdf_defDim(@var{ncid},@var{name},@var{len}) \n\ Define the dimension with the name @var{name} and the length @var{len} in the dataset @var{ncid}. The id of the dimension is returned.\n\ @end deftypefn\n\ @seealso{netcdf_defVar}\n") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); std::string name = args(1).string_value(); size_t len = to_size_t(args(2)); int dimid; check_err(nc_def_dim (ncid, name.c_str(), len, &dimid)); return octave_value(dimid); } // int nc_rename_dim(int ncid, int dimid, const char* name); DEFUN_DLD(netcdf_renameDim, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_renameDim(@var{ncid},@var{dimid},@var{name}) \n\ Renames the dimension with the id @var{dimid} in the data set @var{ncid}. @var{name} is the new name of the dimension.\n\ @end deftypefn\n\ @seealso{netcdf_defDim}\n") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int dimid = args(1).scalar_value(); std::string name = args(2).string_value(); check_err(nc_rename_dim (ncid, dimid, name.c_str())); return octave_value(); } // int nc_def_var (int ncid, const char *name, nc_type xtype, // int ndims, const int dimids[], int *varidp); DEFUN_DLD(netcdf_defVar, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{varid} = } netcdf_defVar(@var{ncid},@var{name},@var{xtype},@var{dimids}) \n\ Defines a variable with the name @var{name} in the dataset @var{ncid}. @var{xtype} can be \"byte\", \"ubyte\", \"short\", \"ushort\", \"int\", \"uint\", \"int64\", \"uint64\", \"float\", \"double\", \"char\" or the corresponding number as returned by netcdf_getConstant. The parameter @var{dimids} define the ids of the dimension. For scalar this parameter is the empty array ([]). The variable id is returned. \n\ @end deftypefn\n\ @seealso{netcdf_open,netcdf_defDim}\n") { if (args.length() != 4) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); std::string name = args(1).string_value (); int xtype = netcdf_get_constant(args(2)).int_value();; Array tmp; if (!args(3).OV_ISEMPTY()) { tmp = args(3).vector_value (); } OCTAVE_LOCAL_BUFFER (int, dimids, tmp.numel()); for (int i = 0; i < tmp.numel(); i++) { dimids[i] = tmp(tmp.numel()-i-1); } int varid; check_err(nc_def_var (ncid, name.c_str(), xtype, tmp.numel(), dimids, &varid)); return octave_value(varid); } // int nc_rename_var(int ncid, int varid, const char* name); DEFUN_DLD(netcdf_renameVar, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_renameVar(@var{ncid},@var{varid},@var{name}) \n\ Renames the variable with the id @var{varid} in the data set @var{ncid}. @var{name} is the new name of the variable.\n\ @end deftypefn\n\ @seealso{netcdf_defVar}\n") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string name = args(2).string_value(); check_err(nc_rename_var (ncid, varid, name.c_str())); return octave_value(); } // int nc_def_var_fill(int ncid, int varid, int no_fill, void *fill_value); DEFUN_DLD(netcdf_defVarFill, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_defVarFill(@var{ncid},@var{varid},@var{no_fill},@var{fillvalue}) \n\ Define the fill-value settings of the NetCDF variable @var{varid}.\n\ If @var{no_fill} is false, then the values between no-contiguous writes are filled with the value @var{fill_value}. This is disabled by setting @var{no_fill} to true.\n\ @end deftypefn\n\ @seealso{netcdf_inqVarFill}\n") { if (args.length() != 4) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int no_fill = args(2).scalar_value(); // boolean octave_value fill_value = args(3); nc_type xtype, basetype; check_err(nc_inq_vartype (ncid, varid, &xtype)); if (xtype < NC_FIRSTUSERTYPEID) basetype = xtype; else { size_t datasz; int classid; size_t nfields; check_err(nc_inq_user_type (ncid, xtype, NULL, &datasz, &basetype, &nfields, &classid)); if (classid != NC_VLEN) { warning ("Non vlen class user variable '%d' - cant read it", classid); } } if (xtype >= NC_FIRSTUSERTYPEID) { switch (basetype) { #define OV_NETCDF_DEF_VARV_FILL(netcdf_type,c_type,method) \ case netcdf_type: \ { \ c_type val; \ memcpy(&val, fill_value.method().fortran_vec(), sizeof(val)); \ nc_vlen_t vlendata = {1,(void*)&val}; \ check_err(nc_def_var_fill(ncid, varid, no_fill, &vlendata)); \ break; \ } OV_NETCDF_DEF_VARV_FILL(NC_BYTE, signed char, int8_array_value) OV_NETCDF_DEF_VARV_FILL(NC_UBYTE, unsigned char, uint8_array_value) OV_NETCDF_DEF_VARV_FILL(NC_SHORT, short, int16_array_value) OV_NETCDF_DEF_VARV_FILL(NC_USHORT, unsigned short, uint16_array_value) OV_NETCDF_DEF_VARV_FILL(NC_INT, int, int32_array_value) OV_NETCDF_DEF_VARV_FILL(NC_UINT, unsigned int, uint32_array_value) OV_NETCDF_DEF_VARV_FILL(NC_INT64, long long, int64_array_value) OV_NETCDF_DEF_VARV_FILL(NC_UINT64, unsigned long long, uint64_array_value) OV_NETCDF_DEF_VARV_FILL(NC_FLOAT, float, float_array_value) OV_NETCDF_DEF_VARV_FILL(NC_DOUBLE,double,array_value) OV_NETCDF_DEF_VARV_FILL(NC_CHAR, char, char_array_value) } } else { switch (xtype) { #define OV_NETCDF_DEF_VAR_FILL(netcdf_type,c_type,method) \ case netcdf_type: \ { \ check_err(nc_def_var_fill(ncid, varid, no_fill, fill_value.method().fortran_vec())); \ break; \ } OV_NETCDF_DEF_VAR_FILL(NC_BYTE, signed char, int8_array_value) OV_NETCDF_DEF_VAR_FILL(NC_UBYTE, unsigned char, uint8_array_value) OV_NETCDF_DEF_VAR_FILL(NC_SHORT, short, int16_array_value) OV_NETCDF_DEF_VAR_FILL(NC_USHORT, unsigned short, uint16_array_value) OV_NETCDF_DEF_VAR_FILL(NC_INT, int, int32_array_value) OV_NETCDF_DEF_VAR_FILL(NC_UINT, unsigned int, uint32_array_value) OV_NETCDF_DEF_VAR_FILL(NC_INT64, long long, int64_array_value) OV_NETCDF_DEF_VAR_FILL(NC_UINT64, unsigned long long, uint64_array_value) OV_NETCDF_DEF_VAR_FILL(NC_FLOAT, float, float_array_value) OV_NETCDF_DEF_VAR_FILL(NC_DOUBLE,double,array_value) OV_NETCDF_DEF_VAR_FILL(NC_CHAR, char, char_array_value) } } return octave_value(); } // int nc_def_var_fill(int ncid, int varid, int no_fill, void *fill_value); DEFUN_DLD(netcdf_inqVarFill, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{no_fill},@var{fillvalue}] = } netcdf_inqVarFill(@var{ncid},@var{varid}) \n\ Determines the fill-value settings of the NetCDF variable @var{varid}.\n\ If @var{no_fill} is false, then the values between no-contiguous writes are filled with the value @var{fill_value}. This is disabled by setting @var{no_fill} to true.\n\ @end deftypefn\n\ @seealso{netcdf_defVarFill}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int no_fill; nc_type xtype, basetype; octave_value_list retval; octave_value data; check_err(nc_inq_vartype (ncid, varid, &xtype)); if (xtype < NC_FIRSTUSERTYPEID) basetype = xtype; else { size_t datasz; int classid; size_t nfields; check_err(nc_inq_user_type (ncid, xtype, NULL, &datasz, &basetype, &nfields, &classid)); if (classid != NC_VLEN) { warning ("Non vlen class user variable '%d' - cant read it", classid); } } if (xtype >= NC_FIRSTUSERTYPEID) { switch (basetype) { #define OV_NETCDF_INQ_VARV_FILL(netcdf_type,c_type) \ case netcdf_type: \ { \ c_type val = 0; \ nc_vlen_t vlendata = {1,(void*)&val}; \ check_err(nc_inq_var_fill(ncid, varid, &no_fill,&vlendata)); \ Array< c_type > fill_value = Array< c_type >(dim_vector(1,1)); \ memcpy(fill_value.fortran_vec(), vlendata.p, sizeof(c_type)); \ data = octave_value(fill_value); \ break; \ } OV_NETCDF_INQ_VARV_FILL(NC_BYTE,octave_int8) OV_NETCDF_INQ_VARV_FILL(NC_UBYTE,octave_uint8) OV_NETCDF_INQ_VARV_FILL(NC_SHORT,octave_int16) OV_NETCDF_INQ_VARV_FILL(NC_USHORT,octave_uint16) OV_NETCDF_INQ_VARV_FILL(NC_INT,octave_int32) OV_NETCDF_INQ_VARV_FILL(NC_UINT,octave_uint32) OV_NETCDF_INQ_VARV_FILL(NC_INT64,octave_int64) OV_NETCDF_INQ_VARV_FILL(NC_UINT64,octave_uint64) OV_NETCDF_INQ_VARV_FILL(NC_FLOAT,float) OV_NETCDF_INQ_VARV_FILL(NC_DOUBLE,double) OV_NETCDF_INQ_VARV_FILL(NC_CHAR,char) } } else { switch (xtype) { #define OV_NETCDF_INQ_VAR_FILL(netcdf_type,c_type) \ case netcdf_type: \ { \ Array< c_type > fill_value = Array< c_type >(dim_vector(1,1)); \ check_err(nc_inq_var_fill(ncid, varid, &no_fill, \ fill_value.fortran_vec())); \ data = octave_value(fill_value); \ break; \ } OV_NETCDF_INQ_VAR_FILL(NC_BYTE,octave_int8) OV_NETCDF_INQ_VAR_FILL(NC_UBYTE,octave_uint8) OV_NETCDF_INQ_VAR_FILL(NC_SHORT,octave_int16) OV_NETCDF_INQ_VAR_FILL(NC_USHORT,octave_uint16) OV_NETCDF_INQ_VAR_FILL(NC_INT,octave_int32) OV_NETCDF_INQ_VAR_FILL(NC_UINT,octave_uint32) OV_NETCDF_INQ_VAR_FILL(NC_INT64,octave_int64) OV_NETCDF_INQ_VAR_FILL(NC_UINT64,octave_uint64) OV_NETCDF_INQ_VAR_FILL(NC_FLOAT,float) OV_NETCDF_INQ_VAR_FILL(NC_DOUBLE,double) OV_NETCDF_INQ_VAR_FILL(NC_CHAR,char) } } //cout << "xtype3 " << xtype << " " << NC_DOUBLE << std::endl; retval(0) = octave_value(no_fill); retval(1) = data; return retval; } //nc_def_var_deflate(int ncid, int varid, int shuffle, int deflate, // int deflate_level); DEFUN_DLD(netcdf_defVarDeflate, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_defVarDeflate (@var{ncid},@var{varid},@var{shuffle},@var{deflate},@var{deflate_level}) \n\ Define the compression settings NetCDF variable @var{varid}.\n\ If @var{deflate} is true, then the variable is compressed. The compression level @var{deflate_level} is an integer between 0 (no compression) and 9 (maximum compression).\n\ @end deftypefn\n\ @seealso{netcdf_inqVarDeflate}\n") { if (args.length() != 5) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int shuffle = args(2).scalar_value(); // boolean int deflate = args(3).scalar_value(); // boolean int deflate_level = args(4).scalar_value(); check_err(nc_def_var_deflate (ncid, varid, shuffle, deflate, deflate_level)); return octave_value(); } //nc_inq_var_deflate(int ncid, int varid, int *shufflep, // int *deflatep, int *deflate_levelp); DEFUN_DLD(netcdf_inqVarDeflate, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{shuffle},@var{deflate},@var{deflate_level}] = } netcdf_inqVarDeflate (@var{ncid},@var{varid}) \n\ Determines the compression settings NetCDF variable @var{varid}.\n\ If @var{deflate} is true, then the variable is compressed. The compression level @var{deflate_level} is an integer between 0 (no compression) and 9 (maximum compression).\n\ @end deftypefn\n\ @seealso{netcdf_defVarDeflate}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int shuffle, deflate, deflate_level; octave_value_list retval; int format; check_err(nc_inq_format(ncid, &format)); // nc_inq_var_deflate returns garbage for classic or 64bit files if (format == NC_FORMAT_CLASSIC || format == NC_FORMAT_64BIT) { shuffle = 0; deflate = 0; deflate_level = 0; } else { check_err(nc_inq_var_deflate(ncid, varid, &shuffle,&deflate,&deflate_level)); } retval(0) = octave_value(shuffle); retval(1) = octave_value(deflate); retval(2) = octave_value(deflate_level); return retval; } //int nc_def_var_chunking(int ncid, int varid, int storage, size_t *chunksizesp); //chunksizes can be ommited if storage is \"CONTIGUOUS\" DEFUN_DLD(netcdf_defVarChunking, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_defVarChunking (@var{ncid},@var{varid},@var{storage},@var{chunkSizes}) \n\ Define the chunking settings of NetCDF variable @var{varid}.\n\ If @var{storage} is the string \"chunked\", the variable is stored by chunk of the size @var{chunkSizes}.\n\ If @var{storage} is the string \"contiguous\", the variable is stored in a contiguous way.\n\ @end deftypefn\n\ @seealso{netcdf_inqVarChunking}\n") { if (args.length() != 3 && args.length() != 4) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string storagestr = args(2).string_value(); int storage; std::transform(storagestr.begin(), storagestr.end(),storagestr.begin(), ::toupper); if (storagestr == "CHUNKED") { storage = NC_CHUNKED; } else if (storagestr == "CONTIGUOUS") { storage = NC_CONTIGUOUS; } else { error("unknown storage %s",storagestr.c_str()); return octave_value(); } if (args.length() == 4) { OCTAVE_LOCAL_BUFFER (size_t, chunksizes, args(3).numel()); to_size_t_vector(args(3), args(3).numel(),chunksizes); check_err(nc_def_var_chunking(ncid, varid, storage, chunksizes)); } else { check_err(nc_def_var_chunking(ncid, varid, storage, NULL)); } return octave_value(); } //int nc_inq_var_chunking(int ncid, int varid, int *storagep, size_t *chunksizesp); DEFUN_DLD(netcdf_inqVarChunking, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{storage},@var{chunkSizes}] = } netcdf_inqVarChunking (@var{ncid},@var{varid}) \n\ Determines the chunking settings of NetCDF variable @var{varid}.\n\ If @var{storage} is the string \"chunked\", the variable is stored by chunk of the size @var{chunkSizes}.\n\ If @var{storage} is the string \"contiguous\", the variable is stored in a contiguous way.\n\ @end deftypefn\n\ @seealso{netcdf_defVarChunking}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int storage; int ndims; octave_value_list retval; check_err(nc_inq_varndims (ncid, varid, &ndims)); OCTAVE_LOCAL_BUFFER (size_t, chunksizes, ndims); check_err(nc_inq_var_chunking(ncid, varid, &storage, chunksizes)); if (storage == NC_CHUNKED) { retval(0) = octave_value("chunked"); // should use uint32NDArray on 32-bit? uint64NDArray chunkSizes = uint64NDArray(dim_vector(1,ndims)); for (int i = 0; i < ndims; i++) { chunkSizes(ndims-i-1) = chunksizes[i]; } retval(1) = octave_value(chunkSizes); } else { retval(0) = octave_value("contiguous"); retval(1) = octave_value(Array()); } return retval; } // nc_def_var_fletcher32(int ncid, int varid, int checksum); DEFUN_DLD(netcdf_defVarFletcher32, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_defVarFletcher32(@var{ncid},@var{varid},@var{checksum}) \n\ Defines the checksum settings of the variable with the id @var{varid} in the data set @var{ncid}. If @var{checksum} is the string \"FLETCHER32\", then fletcher32 checksums will be turned on for this variable. If @var{checksum} is \"NOCHECKSUM\", then checksums will be disabled. \n\ @end deftypefn\n\ @seealso{netcdf_defVar,netcdf_inqVarFletcher32}\n") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int checksum = netcdf_get_constant(args(2)).int_value(); check_err(nc_def_var_fletcher32(ncid, varid, checksum)); return octave_value(); } DEFUN_DLD(netcdf_inqVarFletcher32, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{checksum} =} netcdf_inqVarFletcher32(@var{ncid},@var{varid}) \n\ Determines the checksum settings of the variable with the id @var{varid} in the data set @var{ncid}. If fletcher32 checksums is turned on for this variable, then @var{checksum} is the string \"FLETCHER32\". Otherwise it is the string \"NOCHECKSUM\". \n\ @end deftypefn\n\ @seealso{netcdf_defVar,netcdf_inqVarFletcher32}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int checksum; check_err(nc_inq_var_fletcher32(ncid, varid, &checksum)); if (checksum == NC_FLETCHER32) { return octave_value("FLETCHER32"); } else { return octave_value("NOCHECKSUM"); } } DEFUN_DLD(netcdf_endDef, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_endDef (@var{ncid}) \n\ Leaves define-mode of NetCDF file @var{ncid}.\n\ @end deftypefn\n\ @seealso{netcdf_reDef}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); check_err(nc_enddef (ncid)); return octave_value(); } DEFUN_DLD(netcdf_reDef, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_reDef (@var{ncid}) \n\ Enter define-mode of NetCDF file @var{ncid}.\n\ @end deftypefn\n\ @seealso{netcdf_endDef}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); check_err(nc_redef (ncid)); return octave_value(); } // http://www.unidata.ucar.edu/software/netcdf/docs/netcdf-c/nc_005fput_005fvar_005f-type.html#nc_005fput_005fvar_005f-type DEFUN_DLD(netcdf_putVar, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_putVar (@var{ncid},@var{varid},@var{data}) \n\ @deftypefnx {} {} netcdf_putVar (@var{ncid},@var{varid},@var{start},@var{data}) \n\ @deftypefnx {} {} netcdf_putVar (@var{ncid},@var{varid},@var{start},@var{count},@var{data}) \n\ @deftypefnx {} {} netcdf_putVar (@var{ncid},@var{varid},@var{start},@var{count},@var{stride},@var{data}) \n\ Put data in a NetCDF variable.\n\ The data @var{data} is stored in the variable @var{varid} of the NetCDF file @var{ncid}. \n\ @var{start} is the start index of each dimension (0-based and defaults to a vector of zeros), \n\ @var{count} is the number of elements of to be written along each dimension (default all elements)\n\ and @var{stride} is the sampling interval.\n\ @end deftypefn\n\ @seealso{netcdf_endDef}\n") { if (args.length() < 3 || args.length() > 6) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value (); octave_value data = args(args.length()-1); int ndims; check_err(nc_inq_varndims (ncid, varid, &ndims)); OCTAVE_LOCAL_BUFFER (size_t, start, ndims); OCTAVE_LOCAL_BUFFER (size_t, count, ndims); OCTAVE_LOCAL_BUFFER (ptrdiff_t, stride, ndims); nc_type xtype, basetype; check_err(nc_inq_vartype (ncid, varid, &xtype)); //int sliced_numel = tmp.numel(); if (xtype >= NC_FIRSTUSERTYPEID) { size_t datasz=0; int classid; size_t nfields; check_err(nc_inq_user_type (ncid, xtype, NULL, &datasz, &basetype, &nfields, &classid)); if (classid != NC_VLEN) { warning ("Non vlen class user variable '%d' - cant write it", classid); return octave_value(); } if (!data.OV_ISCELL()) { error ("Expected data to be cell array"); return octave_value(); } } else { basetype = xtype; } start_count_stride(ncid, varid, args, args.length()-1, ndims, start, count, stride); // check if count matched size(data) if (xtype >= NC_FIRSTUSERTYPEID) { Cell ar = data.cell_value(); switch (basetype) { #define OV_NETCDF_PUT_VARA(netcdf_type,c_type,method) \ case netcdf_type: \ { \ for(octave_idx_type i=0;i v = ar(i).method(); \ nc_vlen_t ncl; \ ncl.len = v.numel(); \ ncl.p = (c_type*)v.fortran_vec(); \ count[0] = 1; \ check_err(nc_put_vars (ncid, varid, start, count, stride, &ncl)); \ start[0] = start[0]+1; \ } \ break; \ } OV_NETCDF_PUT_VARA(NC_BYTE, octave_int8, int8_array_value) OV_NETCDF_PUT_VARA(NC_UBYTE, octave_uint8, uint8_array_value) OV_NETCDF_PUT_VARA(NC_SHORT, octave_int16, int16_array_value) OV_NETCDF_PUT_VARA(NC_USHORT, octave_uint16, uint16_array_value) OV_NETCDF_PUT_VARA(NC_INT, octave_int32, int32_array_value) OV_NETCDF_PUT_VARA(NC_UINT, octave_uint32, uint32_array_value) OV_NETCDF_PUT_VARA(NC_INT64, octave_int64, int64_array_value) OV_NETCDF_PUT_VARA(NC_UINT64, octave_uint64, uint64_array_value) OV_NETCDF_PUT_VARA(NC_FLOAT, float, float_array_value) OV_NETCDF_PUT_VARA(NC_DOUBLE,double,array_value) OV_NETCDF_PUT_VARA(NC_CHAR, char, char_array_value) default: { error("unknown type %d" ,basetype); } } } else { switch (xtype) { #define OV_NETCDF_PUT_VAR(netcdf_type,c_type,method) \ case netcdf_type: \ { \ check_err(nc_put_vars (ncid, varid, start, count, stride, (c_type*)data.method().fortran_vec())); \ break; \ } OV_NETCDF_PUT_VAR(NC_BYTE, signed char, int8_array_value) OV_NETCDF_PUT_VAR(NC_UBYTE, unsigned char, uint8_array_value) OV_NETCDF_PUT_VAR(NC_SHORT, short, int16_array_value) OV_NETCDF_PUT_VAR(NC_USHORT, unsigned short, uint16_array_value) OV_NETCDF_PUT_VAR(NC_INT, int, int32_array_value) OV_NETCDF_PUT_VAR(NC_UINT, unsigned int, uint32_array_value) OV_NETCDF_PUT_VAR(NC_INT64, long long, int64_array_value) OV_NETCDF_PUT_VAR(NC_UINT64, unsigned long long, uint64_array_value) OV_NETCDF_PUT_VAR(NC_FLOAT, float, float_array_value) OV_NETCDF_PUT_VAR(NC_DOUBLE,double,array_value) OV_NETCDF_PUT_VAR(NC_CHAR, char, char_array_value) default: { error("unknown type %d" ,xtype); } } } return octave_value(); } DEFUN_DLD(netcdf_getVar, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{data} =} netcdf_getVar (@var{ncid},@var{varid}) \n\ @deftypefnx {} {@var{data} =} netcdf_getVar (@var{ncid},@var{varid},@var{start}) \n\ @deftypefnx {} {@var{data} =} netcdf_getVar (@var{ncid},@var{varid},@var{start},@var{count}) \n\ @deftypefnx {} {@var{data} =} netcdf_getVar (@var{ncid},@var{varid},@var{start},@var{count},@var{stride}) \n\ Get the data from a NetCDF variable.\n\ The data @var{data} is loaded from the variable @var{varid} of the NetCDF file @var{ncid}. \n\ @var{start} is the start index of each dimension (0-based and defaults to a vector of zeros), \n\ @var{count} is the number of elements of to be written along each dimension (default all elements)\n\ and @var{stride} is the sampling interval.\n\ @end deftypefn\n\ @seealso{netcdf_putVar}\n") { if (args.length() < 2 || args.length() > 5) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value (); int ndims; octave_value data; nc_type xtype, basetype; check_err(nc_inq_vartype (ncid, varid, &xtype)); check_err(nc_inq_varndims (ncid, varid, &ndims)); if (xtype < NC_FIRSTUSERTYPEID) basetype = xtype; else { size_t datasz; int classid; size_t nfields; check_err(nc_inq_user_type (ncid, xtype, NULL, &datasz, &basetype, &nfields, &classid)); if (classid != NC_VLEN) { warning ("Non vlen class user variable '%d' - cant read it", classid); return octave_value(); } } //std::cout << "ndims " << ndims << std::endl; OCTAVE_LOCAL_BUFFER (size_t, start, ndims); OCTAVE_LOCAL_BUFFER (size_t, count, ndims); OCTAVE_LOCAL_BUFFER (ptrdiff_t, stride, ndims); size_t sz = 1; dim_vector sliced_dim_vector; if (ndims < 2) { sliced_dim_vector.resize(2); sliced_dim_vector(0) = 1; sliced_dim_vector(1) = 1; } else { sliced_dim_vector.resize(ndims); } start_count_stride(ncid, varid, args, args.length(), ndims, start, count, stride); // std::cout << "count " << count[0] << std::endl; // std::cout << "start " << start[0] << std::endl; // std::cout << "stide " << stride[0] << std::endl; // total size sz for (int i=0; i arr = Array < float >(sliced_dim_vector); // float* time; // time = (float*)malloc(10 * sizeof(float)); // check_err(nc_get_vars(ncid, varid, start, count, stride, time)); // data = octave_value(arr); // return data; // user type if (xtype >= NC_FIRSTUSERTYPEID) { switch (basetype) { #define OV_NETCDF_GET_VARA_CASE(netcdf_type,c_type) \ case netcdf_type: \ { \ Cell arr = Cell(sliced_dim_vector); \ /* necessary for netcdf 4.1.3 */ \ if (sz > 0) { \ OCTAVE_LOCAL_BUFFER (nc_vlen_t, vlendata, sz); \ check_err(nc_get_vars(ncid, varid, start, count, stride, vlendata)); \ dim_vector dv; \ dv.resize(2); \ for (size_t vi=0; vi a = Array < c_type >(dv); \ memcpy(a.fortran_vec(), vlendata[vi].p, vlendata[vi].len*sizeof(c_type)); \ arr(vi) = a; \ } \ nc_free_vlens(sz, vlendata); \ } else { \ warning_with_id("netcdf:variable-size-zero", "variable size 0 or currently too large to process"); \ } \ data = octave_value(arr); \ break; \ } OV_NETCDF_GET_VARA_CASE(NC_BYTE,octave_int8) OV_NETCDF_GET_VARA_CASE(NC_UBYTE,octave_uint8) OV_NETCDF_GET_VARA_CASE(NC_SHORT,octave_int16) OV_NETCDF_GET_VARA_CASE(NC_USHORT,octave_uint16) OV_NETCDF_GET_VARA_CASE(NC_INT,octave_int32) OV_NETCDF_GET_VARA_CASE(NC_UINT,octave_uint32) OV_NETCDF_GET_VARA_CASE(NC_INT64,octave_int64) OV_NETCDF_GET_VARA_CASE(NC_UINT64,octave_uint64) OV_NETCDF_GET_VARA_CASE(NC_FLOAT,float) OV_NETCDF_GET_VARA_CASE(NC_DOUBLE,double) OV_NETCDF_GET_VARA_CASE(NC_CHAR, char) default: { error("unknown type %d" ,xtype); } } } else { switch (xtype) { #define OV_NETCDF_GET_VAR_CASE(netcdf_type,c_type) \ case netcdf_type: \ { \ Array < c_type > arr = Array < c_type >(sliced_dim_vector); \ /* necessary for netcdf 4.1.3 */ \ if (sz > 0) { \ check_err(nc_get_vars(ncid, varid, start, count, stride, arr.fortran_vec())); \ } else { \ warning_with_id("netcdf:variable-size-zero", "variable size 0 or currently too large to process"); \ } \ data = octave_value(arr); \ break; \ } OV_NETCDF_GET_VAR_CASE(NC_BYTE,octave_int8) OV_NETCDF_GET_VAR_CASE(NC_UBYTE,octave_uint8) OV_NETCDF_GET_VAR_CASE(NC_SHORT,octave_int16) OV_NETCDF_GET_VAR_CASE(NC_USHORT,octave_uint16) OV_NETCDF_GET_VAR_CASE(NC_INT,octave_int32) OV_NETCDF_GET_VAR_CASE(NC_UINT,octave_uint32) OV_NETCDF_GET_VAR_CASE(NC_INT64,octave_int64) OV_NETCDF_GET_VAR_CASE(NC_UINT64,octave_uint64) OV_NETCDF_GET_VAR_CASE(NC_FLOAT,float) OV_NETCDF_GET_VAR_CASE(NC_DOUBLE,double) OV_NETCDF_GET_VAR_CASE(NC_CHAR, char) default: { error("unknown type %d" ,xtype); } } } return data; } DEFUN_DLD(netcdf_close, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_close(@var{ncid}) \n\ Close the NetCDF file with the id @var{ncid}.\n\ @end deftypefn\n\ @seealso{netcdf_open}\n") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); check_err(nc_close(ncid)); return octave_value (); } // int nc_inq_attname(int ncid, int varid, int attnum, char *name); DEFUN_DLD(netcdf_inqAttName, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{name} =} netcdf_inqAttName (@var{ncid},@var{varid},@var{attnum}) \n\ Get the name of a NetCDF attribute.\n\ This function returns the name of the attribute with the id @var{attnum} of the variable \n\ @var{varid} in the NetCDF file @var{ncid}. For global attributes @var{varid} can be \n\ netcdf_getConstant(\"global\").\n\ @seealso{netcdf_inqAttName}\n\ @end deftypefn") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); int attnum = args(2).scalar_value(); char name[NC_MAX_NAME+1]; check_err(nc_inq_attname(ncid, varid, attnum, name)); return octave_value(std::string(name)); } DEFUN_DLD(netcdf_inqAttID, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{attnum} =} netcdf_inqAttID(@var{ncid},@var{varid},@var{attname}) \n\ Return the attribute id @var{attnum} of the attribute named @var{attname} of the variable @var{varid} in the dataset @var{ncid}. \n\ For global attributes @var{varid} can be \n\ netcdf_getConstant(\"global\").\n\ @seealso{netcdf_inqAttName}\n\ @end deftypefn") { if (args.length() != 3) { print_usage (); return octave_value (); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string attname = args(2).string_value(); int attnum; check_err (nc_inq_attid (ncid, varid, attname.c_str(), &attnum)); return octave_value(attnum); } //int nc_inq_att (int ncid, int varid, const char *name, // nc_type *xtypep, size_t *lenp); DEFUN_DLD(netcdf_inqAtt, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{xtype},@var{len}] = } netcdf_inqAtt(@var{ncid},@var{varid},@var{name}) \n\ Get attribute type and length.\n\ @seealso{netcdf_inqAttName}\n\ @end deftypefn") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string name = args(2).string_value(); int xtype; size_t len; octave_value_list retval; check_err(nc_inq_att(ncid, varid, name.c_str(), &xtype, &len)); retval(0) = octave_value(xtype); retval(1) = octave_value(len); return retval; } DEFUN_DLD(netcdf_getAtt, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{data} =} netcdf_getAtt (@var{ncid},@var{varid},@var{name}) \n\ Get the value of a NetCDF attribute.\n\ This function returns the value of the attribute called @var{name} of the variable \n\ @var{varid} in the NetCDF file @var{ncid}. For global attributes @var{varid} can be \n\ netcdf_getConstant(\"global\").\n\ @seealso{netcdf_putAtt}\n\ @end deftypefn") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string attname = args(2).string_value(); nc_type xtype, basetype; size_t len; octave_value data; check_err(nc_inq_att(ncid, varid, attname.c_str(), &xtype, &len)); if (xtype < NC_FIRSTUSERTYPEID) basetype = xtype; else { size_t datasz; int classid; size_t nfields; check_err(nc_inq_user_type (ncid, xtype, NULL, &datasz, &basetype, &nfields, &classid)); if (classid != NC_VLEN) { warning ("Non vlen class user variable '%d' - cant read it", classid); } } #define OV_NETCDF_GET_ATT_CASE(netcdf_type,c_type) \ if (basetype == netcdf_type) \ { \ Array< c_type > arr = Array< c_type >(dim_vector(1,len)); \ check_err(nc_get_att(ncid, varid, attname.c_str(), arr.fortran_vec())); \ data = octave_value(arr); \ } #define OV_NETCDF_GETVLEN_ATT_CASE(netcdf_type,c_type) \ if(basetype == netcdf_type) \ { \ OCTAVE_LOCAL_BUFFER (nc_vlen_t, vlendata, len); \ Array< c_type > arr = Array< c_type >(dim_vector(1,len)); \ check_err(nc_get_att(ncid, varid, attname.c_str(), vlendata)); \ for (size_t vi=0; vi= NC_FIRSTUSERTYPEID) { OV_NETCDF_GETVLEN_ATT_CASE(NC_BYTE,octave_int8) OV_NETCDF_GETVLEN_ATT_CASE(NC_UBYTE,octave_uint8) OV_NETCDF_GETVLEN_ATT_CASE(NC_SHORT,octave_int16) OV_NETCDF_GETVLEN_ATT_CASE(NC_USHORT,octave_uint16) OV_NETCDF_GETVLEN_ATT_CASE(NC_INT,octave_int32) OV_NETCDF_GETVLEN_ATT_CASE(NC_UINT,octave_uint32) OV_NETCDF_GETVLEN_ATT_CASE(NC_INT64,octave_int64) OV_NETCDF_GETVLEN_ATT_CASE(NC_UINT64,octave_uint64) OV_NETCDF_GETVLEN_ATT_CASE(NC_FLOAT,float) OV_NETCDF_GETVLEN_ATT_CASE(NC_DOUBLE,double) OV_NETCDF_GETVLEN_ATT_CASE(NC_CHAR, char) } else { OV_NETCDF_GET_ATT_CASE(NC_BYTE,octave_int8) OV_NETCDF_GET_ATT_CASE(NC_UBYTE,octave_uint8) OV_NETCDF_GET_ATT_CASE(NC_SHORT,octave_int16) OV_NETCDF_GET_ATT_CASE(NC_USHORT,octave_uint16) OV_NETCDF_GET_ATT_CASE(NC_INT,octave_int32) OV_NETCDF_GET_ATT_CASE(NC_UINT,octave_uint32) OV_NETCDF_GET_ATT_CASE(NC_INT64,octave_int64) OV_NETCDF_GET_ATT_CASE(NC_UINT64,octave_uint64) OV_NETCDF_GET_ATT_CASE(NC_FLOAT,float) OV_NETCDF_GET_ATT_CASE(NC_DOUBLE,double) OV_NETCDF_GET_ATT_CASE(NC_CHAR, char) } return data; } DEFUN_DLD(netcdf_putAtt, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_putAtt (@var{ncid},@var{varid},@var{name},@var{data}) \n\ Defines a NetCDF attribute.\n\ This function defines the attribute called @var{name} of the variable \n\ @var{varid} in the NetCDF file @var{ncid}. The value of the attribute will be @var{data}. \n\ For global attributes @var{varid} can be \n\ netcdf_getConstant(\"global\").\n\ @seealso{netcdf_getAtt}\n\ @end deftypefn") { if (args.length() != 4) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string attname = args(2).string_value(); octave_value data = args(3); nc_type xtype; // get matching netcdf type if (data.is_string()) xtype = NC_CHAR; else if (data.is_int8_type()) xtype = NC_BYTE; else if (data.is_uint8_type()) xtype = NC_UBYTE; else if (data.is_int16_type()) xtype = NC_SHORT; else if (data.is_uint16_type()) xtype = NC_USHORT; else if (data.is_int32_type()) xtype = NC_INT; else if (data.is_uint32_type()) xtype = NC_UINT; else if (data.is_int64_type()) xtype = NC_INT64; else if (data.is_uint64_type()) xtype = NC_UINT64; else if (data.is_single_type()) xtype = NC_FLOAT; else xtype = NC_DOUBLE; //cout << "xtype " << xtype << endl; size_t len = data.numel(); switch (xtype) { #define OV_NETCDF_PUT_ATT(netcdf_type,c_type,method) \ case netcdf_type: \ { \ check_err(nc_put_att (ncid, varid, attname.c_str(), xtype, len, data.method().fortran_vec())); \ break; \ } OV_NETCDF_PUT_ATT(NC_BYTE, signed char, int8_array_value) OV_NETCDF_PUT_ATT(NC_UBYTE, unsigned char, uint8_array_value) OV_NETCDF_PUT_ATT(NC_SHORT, short, int16_array_value) OV_NETCDF_PUT_ATT(NC_USHORT, unsigned short, uint16_array_value) OV_NETCDF_PUT_ATT(NC_INT, int, int32_array_value) OV_NETCDF_PUT_ATT(NC_UINT, unsigned int, uint32_array_value) OV_NETCDF_PUT_ATT(NC_INT64, long long, int64_array_value) OV_NETCDF_PUT_ATT(NC_UINT64, unsigned long long, uint64_array_value) OV_NETCDF_PUT_ATT(NC_FLOAT, float, float_array_value) OV_NETCDF_PUT_ATT(NC_DOUBLE,double,array_value) OV_NETCDF_PUT_ATT(NC_CHAR, char, char_array_value) } /* check_err(nc_put_att (int ncid, int varid, const char *name, nc_type xtype, size_t len, const void *op));*/ return octave_value(); } DEFUN_DLD(netcdf_copyAtt, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_copyAtt (@var{ncid},@var{varid},@var{name},@var{ncid_out},@var{varid_out}) \n\ Copies the attribute named @var{old_name} of the variable @var{varid} in the data set @var{ncid} \n\ to the variable @var{varid_out} in the data set @var{ncid_out}. \n\ To copy a global attribute use netcdf_getConstant(\"global\") for @var{varid} or @var{varid_out}.\n\ @seealso{netcdf_getAtt,netcdf_getConstant}\n\ @end deftypefn") { if (args.length() != 5) { print_usage (); return octave_value (); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string name = args(2).string_value(); int ncid_out = args(3).scalar_value(); int varid_out = args(4).scalar_value(); check_err (nc_copy_att (ncid, varid, name.c_str(), ncid_out, varid_out)); return octave_value (); } DEFUN_DLD(netcdf_renameAtt, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_renameAtt(@var{ncid},@var{varid},@var{old_name},@var{new_name}) \n\ Renames the attribute named @var{old_name} of the variable @var{varid} in the data set @var{ncid}. @var{new_name} is the new name of the attribute.\n\ To rename a global attribute use netcdf_getConstant(\"global\") for @var{varid}.\n\ @seealso{netcdf_copyAtt,netcdf_getConstant}\n\ @end deftypefn") { if (args.length() != 4) { print_usage (); return octave_value (); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string old_name = args(2).string_value(); std::string new_name = args(3).string_value(); check_err(nc_rename_att (ncid, varid, old_name.c_str(), new_name.c_str())); return octave_value (); } DEFUN_DLD(netcdf_delAtt, args,, "-*- texinfo -*-\n\ @deftypefn {} {} netcdf_delAtt(@var{ncid},@var{varid},@var{name}) \n\ Deletes the attribute named @var{name} of the variable @var{varid} in the data set @var{ncid}. \n\ To delete a global attribute use netcdf_getConstant(\"global\") for @var{varid}.\n\ @seealso{netcdf_defAtt,netcdf_getConstant}\n\ @end deftypefn") { if (args.length() != 3) { print_usage (); return octave_value (); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); std::string name = args(2).string_value(); check_err(nc_del_att (ncid, varid, name.c_str())); return octave_value (); } DEFUN_DLD(netcdf_inqVarID, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{varid} = } netcdf_inqVarID (@var{ncid},@var{name}) \n\ Return the id of a variable based on its name.\n\ @seealso{netcdf_defVar,netcdf_inqVarIDs}\n\ @end deftypefn") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); std::string varname = args(1).string_value(); int varid; check_err(nc_inq_varid(ncid,varname.c_str(), &varid)); return octave_value(varid); } DEFUN_DLD(netcdf_inqVarIDs, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{varids} = } netcdf_inqVarID (@var{ncid}) \n\ Return all variable ids.\n\ This functions returns all variable ids in a NetCDF file or NetCDF group.\n\ @seealso{netcdf_inqVarID}\n\ @end deftypefn") { if (args.length() != 1) { print_usage (); return octave_value (); } int ncid = args(0).scalar_value(); int nvars; check_err(nc_inq_varids(ncid, &nvars, NULL)); OCTAVE_LOCAL_BUFFER(int,tmp,nvars); NETCDF_INT_ARRAY varids = NETCDF_INT_ARRAY(dim_vector(1,nvars)); check_err(nc_inq_varids(ncid, &nvars, tmp)); for (int i=0; i < nvars; i++) { varids(i) = tmp[i]; } return octave_value(varids); } DEFUN_DLD(netcdf_inqVar, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{name},@var{nctype},@var{dimids},@var{nattr}] = } netcdf_inqVar (@var{ncid},@var{varid}) \n\ Inquires information about a NetCDF variable.\n\ This functions returns the @var{name}, the NetCDF type @var{nctype}, an array of dimension ids \n\ @var{dimids} and the number of attributes @var{nattr} of the NetCDF variable. @var{nctype} in an \n\ integer corresponding NetCDF constants.\n\ @seealso{netcdf_inqVarID,netcdf_getConstant}\n\ @end deftypefn") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int varid = args(1).scalar_value(); char name[NC_MAX_NAME+1]; int ndims, natts; nc_type xtype; octave_value_list retval; check_err(nc_inq_varndims(ncid, varid, &ndims)); OCTAVE_LOCAL_BUFFER (int, dimids, ndims); check_err(nc_inq_var(ncid, varid, name, &xtype, &ndims, dimids, &natts)); retval(0) = octave_value(std::string(name)); retval(1) = octave_value(xtype); // copy output arguments Array dimids_ = Array(dim_vector(1,ndims)); for (int i = 0; i < ndims; i++) { dimids_(i) = dimids[ndims-i-1]; } retval(2) = octave_value(dimids_); retval(3) = octave_value(natts); return retval; } DEFUN_DLD(netcdf_inqDim, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{name},@var{length}] =} netcdf_inqDim(@var{ncid},@var{dimid}) \n\ Returns the name and length of a NetCDF dimension.\n\ @seealso{netcdf_inqDimID}\n\ @end deftypefn") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int dimid = args(1).scalar_value(); octave_value_list retval; char name[NC_MAX_NAME+1]; size_t length; check_err(nc_inq_dim(ncid, dimid, name, &length)); retval(0) = octave_value(std::string(name)); retval(1) = octave_value(length); return retval; } DEFUN_DLD(netcdf_inqDimID, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{dimid} =} netcdf_inqDimID(@var{ncid},@var{dimname}) \n\ Return the id of a NetCDF dimension.\n\ @seealso{netcdf_inqDim}\n\ @end deftypefn") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); std::string dimname = args(1).string_value(); int id; octave_value_list retval; check_err(nc_inq_dimid(ncid, dimname.c_str(), &id)); retval(0) = octave_value(id); return retval; } // int nc_inq_dimids(int ncid, int *ndims, int *dimids, int include_parents); DEFUN_DLD(netcdf_inqDimIDs, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{dimids} =} netcdf_inqDimID(@var{ncid}) \n\ @deftypefnx {} {@var{dimids} =} netcdf_inqDimID(@var{ncid},@var{include_parents}) \n\ Return the dimension ids defined in a NetCDF file.\n\ If @var{include_parents} is 1, the dimension ids of the parent group are also returned.\n\ Per default this is not the case (@var{include_parents} is 0).\n\ @seealso{netcdf_inqDim}\n\ @end deftypefn") { if (args.length() != 1 && args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int include_parents = 0; if (args.length() == 2) { include_parents = args(0).scalar_value(); } int ndims; check_err(nc_inq_ndims(ncid, &ndims)); OCTAVE_LOCAL_BUFFER(int,tmp,ndims); NETCDF_INT_ARRAY dimids = NETCDF_INT_ARRAY(dim_vector(1,ndims)); check_err(nc_inq_dimids(ncid, &ndims, tmp, include_parents)); for (int i=0; i < ndims; i++) { dimids(i) = tmp[i]; } return octave_value(dimids); } // groups //int nc_def_grp(int parent_ncid, const char *name, int *new_ncid); DEFUN_DLD(netcdf_defGrp, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{new_ncid} =} netcdf_defGrp(@var{ncid},@var{name}) \n\ Define a group in a NetCDF file.\n\ @seealso{netcdf_inqGrps}\n\ @end deftypefn") { if (args.length() != 2) { print_usage (); return octave_value(); } int parent_ncid = args(0).scalar_value(); std::string name = args(1).string_value(); int new_ncid; check_err(nc_def_grp(parent_ncid, name.c_str(), &new_ncid)); return octave_value(new_ncid); } // int nc_inq_grps(int ncid, int *numgrps, int *ncids); DEFUN_DLD(netcdf_inqGrps, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{ncids} =} netcdf_inqGrps(@var{ncid}) \n\ Return all groups ids in a NetCDF file.\n\ @seealso{netcdf_inqGrps}\n\ @end deftypefn") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int numgrps; check_err(nc_inq_grps(ncid, &numgrps, NULL)); OCTAVE_LOCAL_BUFFER(int,tmp,numgrps); NETCDF_INT_ARRAY ncids = NETCDF_INT_ARRAY(dim_vector(1,numgrps)); check_err(nc_inq_grps(ncid, NULL, tmp)); for (int i=0; i < numgrps; i++) { ncids(i) = tmp[i]; } return octave_value(ncids); } //int nc_inq_grpname(int ncid, char *name); DEFUN_DLD(netcdf_inqGrpName, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{name} =} netcdf_inqGrpName(@var{ncid}) \n\ Return group name in a NetCDF file.\n\ @seealso{netcdf_inqGrps}\n\ @end deftypefn") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); char name[NC_MAX_NAME+1]; check_err(nc_inq_grpname(ncid, name)); return octave_value(std::string(name)); } //int nc_inq_grpname_full(int ncid, size_t *lenp, char *full_name); DEFUN_DLD(netcdf_inqGrpNameFull, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{name} =} netcdf_inqGrpNameFull(@var{ncid}) \n\ Return full name of group in NetCDF file.\n\ @seealso{netcdf_inqGrpName}\n\ @end deftypefn") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); size_t len; check_err(nc_inq_grpname_len(ncid,&len)); OCTAVE_LOCAL_BUFFER(char, name, len+1); if (name == 0) { error ("netcdf: error allocating buffer for name\n"); return octave_value (); } octave_value retval; check_err(nc_inq_grpname_full(ncid, &len, name)); retval = octave_value(std::string(name)); return retval; } // int nc_inq_grp_parent(int ncid, int *parent_ncid); DEFUN_DLD(netcdf_inqGrpParent, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{parent_ncid} =} netcdf_inqGrpParent(@var{ncid}) \n\ Return id of the parent group\n\ @seealso{netcdf_inqGrpName}\n\ @end deftypefn") { if (args.length() != 1) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); int parent_ncid; check_err(nc_inq_grp_parent(ncid, &parent_ncid)); return octave_value(parent_ncid); } // int nc_inq_grp_full_ncid(int ncid, char *full_name, int *grp_ncid); DEFUN_DLD(netcdf_inqGrpFullNcid, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{grp_ncid} =} netcdf_inqGrpFullNcid(@var{ncid},@var{name}) \n\ Return the group id based on the full group name.\n\ @seealso{netcdf_inqGrpName}\n\ @end deftypefn") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); std::string name = args(1).string_value(); int grp_ncid; int format; check_err(nc_inq_format(ncid, &format)); if (format == NC_FORMAT_CLASSIC || format == NC_FORMAT_64BIT) { if (name == "/") { return octave_value(ncid); } else { error("groups are not supported in this format"); return octave_value(); } } // nc_inq_grp_full_ncid makes a segmentation fault if // file is in non-HDF5 format check_err(nc_inq_grp_full_ncid(ncid, name.c_str(),&grp_ncid)); return octave_value(grp_ncid); } // int nc_inq_ncid(int ncid, const char *name, int *grp_ncid); DEFUN_DLD(netcdf_inqNcid, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{grp_ncid} =} netcdf_inqNcid(@var{ncid},@var{name}) \n\ Return group id based on its name\n\ @seealso{netcdf_inqGrpFullNcid}\n\ @end deftypefn") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); std::string name = args(1).string_value(); int grp_ncid; check_err(nc_inq_ncid(ncid, name.c_str(), &grp_ncid)); return octave_value(grp_ncid); } // int nc_def_vlen(int ncid, const char *name, nc_type base_typeid, nc_type *xtypep); DEFUN_DLD(netcdf_defVlen, args,, "-*- texinfo -*-\n\ @deftypefn {} {@var{varid} = } netcdf_defVlen(@var{ncid},@var{typename},@var{basetype}) \n\ Defines a NC_VLEN variable length array type with the type name @var{typename} and a base datatype of @var{basetype} in the dataset @var{ncid}. @var{basetype} can be \"byte\", \"ubyte\", \"short\", \"ushort\", \"int\", \"uint\", \"int64\", \"uint64\", \"float\", \"double\", \"char\" or the corresponding number as returned by netcdf_getConstant. The new data type id is returned. \n\ @end deftypefn\n\ @seealso{netcdf_open,netcdf_defVar, netcdf_inqVlen}\n") { if (args.length() != 3) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); std::string name = args(1).string_value (); nc_type basetype = 0; if (args(2).is_string()) basetype = netcdf_get_constant(args(2)).int_value(); else basetype = args(2).int_value(); nc_type varid; check_err(nc_def_vlen (ncid, name.c_str(), basetype, &varid)); return octave_value(varid); } // int nc_inq_vlen(int ncid, nc_type xtype, char *name, size_t datasz, nc_type *basetypeid); DEFUN_DLD(netcdf_inqVlen, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{typename}, @var{bytesize}, @var{basetypeid}] = } netcdf_inqVlen(@var{ncid},@var{typeid}) \n\ Provide information on a NC_VLEN variable length array type @var{typeid} in the dataset @var{ncid}.\n\ \n \ The function returns the typename, bytesize, and base type id.\n \ \n \ @end deftypefn\n\ @seealso{netcdf_open, netcdf_defVlen}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); nc_type nctypeid = netcdf_get_constant(args(1)).int_value();; nc_type basetypeid; char name[NC_MAX_NAME+1]; size_t datasz; check_err(nc_inq_vlen (ncid, nctypeid, name, &datasz, &basetypeid)); octave_value_list retval; retval(0) = octave_value(name); retval(1) = octave_value(datasz); retval(2) = octave_value(basetypeid); return retval; } // int nc_inq_user_type(int ncid, nc_type xtype, char *name, size_t datasz, nc_type *basetypeid, size_t nfields, int *classp); DEFUN_DLD(netcdf_inqUserType, args,, "-*- texinfo -*-\n\ @deftypefn {} {[@var{typename}, @var{bytesize}, @var{basetypeid}, @var{numfields}, @var{classid}] = } netcdf_inqUserType(@var{ncid},@var{typeid}) \n\ Provide information on a user defined type @var{typeid} in the dataset @var{ncid}.\n\ \n \ The function returns the typename, bytesize, base type id, number of fields and class identifier of the type.\n \ \n \ @end deftypefn\n\ @seealso{netcdf_open, netcdf_defVlen, netcdf_inqVlen}\n") { if (args.length() != 2) { print_usage (); return octave_value(); } int ncid = args(0).scalar_value(); nc_type nctypeid = netcdf_get_constant(args(1)).int_value();; nc_type basetypeid; char name[NC_MAX_NAME+1]; size_t datasz; int classid; size_t nfields; check_err(nc_inq_user_type (ncid, nctypeid, name, &datasz, &basetypeid, &nfields, &classid)); octave_value_list retval; retval(0) = octave_value(name); retval(1) = octave_value(datasz); retval(2) = octave_value(basetypeid); retval(3) = octave_value(nfields); retval(4) = octave_value(classid); return retval; } netcdf-1.0.20/src/aclocal.m40000644000000000000000000000127315205072111012407 0ustar00# generated automatically by aclocal 1.18.1 -*- Autoconf -*- # Copyright (C) 1996-2025 Free Software Foundation, Inc. # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY, to the extent permitted by law; without # even the implied warranty of MERCHANTABILITY or FITNESS FOR A # PARTICULAR PURPOSE. m4_ifndef([AC_CONFIG_MACRO_DIRS], [m4_defun([_AM_CONFIG_MACRO_DIRS], [])m4_defun([AC_CONFIG_MACRO_DIRS], [_AM_CONFIG_MACRO_DIRS($@)])]) m4_include([m4/octave-forge.m4]) netcdf-1.0.20/src/autogen.sh0000755000000000000000000000123415205072111012545 0ustar00#! /bin/sh ## Octave netcdf package bootstrap script ## Run this to generate the configure script set -e # halt if unhandled error force="" if [ "x$1" == "x--force" ]; then force="--force"; rm -f config.guess config.sub; fi # install these if we need to ? if ! [ -f config.guess ]; then wget -O config.guess https://git.savannah.gnu.org/cgit/config.git/plain/config.guess; chmod a+rx config.guess; fi if ! [ -f config.sub ]; then wget -O config.sub https://git.savannah.gnu.org/cgit/config.git/plain/config.sub; chmod a+rx config.sub; fi aclocal $force autoconf $force # generate configure script autoheader -f #rm -f configure.ac rm -rf autom4te.cache netcdf-1.0.20/src/config.guess0000755000000000000000000014324215205072111013072 0ustar00#! /bin/sh # Attempt to guess a canonical system name. # Copyright 1992-2025 Free Software Foundation, Inc. # shellcheck disable=SC2006,SC2268 # see below for rationale timestamp='2025-07-10' # This file is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 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However, this script identifies a wide # variety of pre-POSIX systems that do not have POSIX shells at all, and # even some reasonably current systems (Solaris 10 as case-in-point) still # have a pre-POSIX /bin/sh. me=`echo "$0" | sed -e 's,.*/,,'` usage="\ Usage: $0 [OPTION] Output the configuration name of the system '$me' is run on. Options: -h, --help print this help, then exit -t, --time-stamp print date of last modification, then exit -v, --version print version number, then exit Report bugs and patches to ." version="\ GNU config.guess ($timestamp) Originally written by Per Bothner. Copyright 1992-2025 Free Software Foundation, Inc. This is free software; see the source for copying conditions. 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We still # use 'HOST_CC' if defined, but it is deprecated. # Portable tmp directory creation inspired by the Autoconf team. tmp= # shellcheck disable=SC2172 trap 'test -z "$tmp" || rm -fr "$tmp"' 0 1 2 13 15 set_cc_for_build() { # prevent multiple calls if $tmp is already set test "$tmp" && return 0 : "${TMPDIR=/tmp}" # shellcheck disable=SC2039,SC3028 { tmp=`(umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } || { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir "$tmp" 2>/dev/null) ; } || { tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir "$tmp" 2>/dev/null) && echo "Warning: creating insecure temp directory" >&2 ; } || { echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; } dummy=$tmp/dummy case ${CC_FOR_BUILD-},${HOST_CC-},${CC-} in ,,) echo "int x;" > "$dummy.c" for driver in cc gcc c17 c99 c89 ; do if ($driver -c -o "$dummy.o" "$dummy.c") >/dev/null 2>&1 ; then CC_FOR_BUILD=$driver break fi done if test x"$CC_FOR_BUILD" = x ; then CC_FOR_BUILD=no_compiler_found fi ;; ,,*) CC_FOR_BUILD=$CC ;; ,*,*) CC_FOR_BUILD=$HOST_CC ;; esac } # This is needed to find uname on a Pyramid OSx when run in the BSD universe. # (ghazi@noc.rutgers.edu 1994-08-24) if test -f /.attbin/uname ; then PATH=$PATH:/.attbin ; export PATH fi UNAME_MACHINE=`(uname -m) 2>/dev/null` || UNAME_MACHINE=unknown UNAME_RELEASE=`(uname -r) 2>/dev/null` || UNAME_RELEASE=unknown UNAME_SYSTEM=`(uname -s) 2>/dev/null` || UNAME_SYSTEM=unknown UNAME_VERSION=`(uname -v) 2>/dev/null` || UNAME_VERSION=unknown case $UNAME_SYSTEM in Linux|GNU|GNU/*) LIBC=unknown set_cc_for_build cat <<-EOF > "$dummy.c" #if defined(__ANDROID__) LIBC=android #else #include #if defined(__UCLIBC__) LIBC=uclibc #elif defined(__dietlibc__) LIBC=dietlibc #elif defined(__GLIBC__) LIBC=gnu #elif defined(__LLVM_LIBC__) LIBC=llvm #else #include /* First heuristic to detect musl libc. */ #ifdef __DEFINED_va_list LIBC=musl #endif #endif #endif EOF cc_set_libc=`$CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^LIBC' | sed 's, ,,g'` eval "$cc_set_libc" # Second heuristic to detect musl libc. if [ "$LIBC" = unknown ] && command -v ldd >/dev/null && ldd --version 2>&1 | grep -q ^musl; then LIBC=musl fi # If the system lacks a compiler, then just pick glibc. # We could probably try harder. if [ "$LIBC" = unknown ]; then LIBC=gnu fi ;; esac # Note: order is significant - the case branches are not exclusive. case $UNAME_MACHINE:$UNAME_SYSTEM:$UNAME_RELEASE:$UNAME_VERSION in *:NetBSD:*:*) # NetBSD (nbsd) targets should (where applicable) match one or # more of the tuples: *-*-netbsdelf*, *-*-netbsdaout*, # *-*-netbsdecoff* and *-*-netbsd*. For targets that recently # switched to ELF, *-*-netbsd* would select the old # object file format. This provides both forward # compatibility and a consistent mechanism for selecting the # object file format. # # Note: NetBSD doesn't particularly care about the vendor # portion of the name. We always set it to "unknown". UNAME_MACHINE_ARCH=`(uname -p 2>/dev/null || \ /sbin/sysctl -n hw.machine_arch 2>/dev/null || \ /usr/sbin/sysctl -n hw.machine_arch 2>/dev/null || \ echo unknown)` case $UNAME_MACHINE_ARCH in aarch64eb) machine=aarch64_be-unknown ;; armeb) machine=armeb-unknown ;; arm*) machine=arm-unknown ;; sh3el) machine=shl-unknown ;; sh3eb) machine=sh-unknown ;; sh5el) machine=sh5le-unknown ;; earmv*) arch=`echo "$UNAME_MACHINE_ARCH" | sed -e 's,^e\(armv[0-9]\).*$,\1,'` endian=`echo "$UNAME_MACHINE_ARCH" | sed -ne 's,^.*\(eb\)$,\1,p'` machine=${arch}${endian}-unknown ;; *) machine=$UNAME_MACHINE_ARCH-unknown ;; esac # The Operating System including object format, if it has switched # to ELF recently (or will in the future) and ABI. case $UNAME_MACHINE_ARCH in earm*) os=netbsdelf ;; arm*|i386|m68k|ns32k|sh3*|sparc|vax) set_cc_for_build if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ELF__ then # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout). # Return netbsd for either. FIX? os=netbsd else os=netbsdelf fi ;; *) os=netbsd ;; esac # Determine ABI tags. case $UNAME_MACHINE_ARCH in earm*) expr='s/^earmv[0-9]/-eabi/;s/eb$//' abi=`echo "$UNAME_MACHINE_ARCH" | sed -e "$expr"` ;; esac # The OS release # Debian GNU/NetBSD machines have a different userland, and # thus, need a distinct triplet. However, they do not need # kernel version information, so it can be replaced with a # suitable tag, in the style of linux-gnu. case $UNAME_VERSION in Debian*) release='-gnu' ;; *) release=`echo "$UNAME_RELEASE" | sed -e 's/[-_].*//' | cut -d. -f1,2` ;; esac # Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM: # contains redundant information, the shorter form: # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used. GUESS=$machine-${os}${release}${abi-} ;; *:Bitrig:*:*) UNAME_MACHINE_ARCH=`arch | sed 's/Bitrig.//'` GUESS=$UNAME_MACHINE_ARCH-unknown-bitrig$UNAME_RELEASE ;; *:OpenBSD:*:*) UNAME_MACHINE_ARCH=`arch | sed 's/OpenBSD.//'` GUESS=$UNAME_MACHINE_ARCH-unknown-openbsd$UNAME_RELEASE ;; *:SecBSD:*:*) UNAME_MACHINE_ARCH=`arch | sed 's/SecBSD.//'` GUESS=$UNAME_MACHINE_ARCH-unknown-secbsd$UNAME_RELEASE ;; *:LibertyBSD:*:*) UNAME_MACHINE_ARCH=`arch | sed 's/^.*BSD\.//'` GUESS=$UNAME_MACHINE_ARCH-unknown-libertybsd$UNAME_RELEASE ;; *:MidnightBSD:*:*) GUESS=$UNAME_MACHINE-unknown-midnightbsd$UNAME_RELEASE ;; *:ekkoBSD:*:*) GUESS=$UNAME_MACHINE-unknown-ekkobsd$UNAME_RELEASE ;; *:SolidBSD:*:*) GUESS=$UNAME_MACHINE-unknown-solidbsd$UNAME_RELEASE ;; *:OS108:*:*) GUESS=$UNAME_MACHINE-unknown-os108_$UNAME_RELEASE ;; macppc:MirBSD:*:*) GUESS=powerpc-unknown-mirbsd$UNAME_RELEASE ;; *:MirBSD:*:*) GUESS=$UNAME_MACHINE-unknown-mirbsd$UNAME_RELEASE ;; *:Sortix:*:*) GUESS=$UNAME_MACHINE-unknown-sortix ;; *:Twizzler:*:*) GUESS=$UNAME_MACHINE-unknown-twizzler ;; *:Redox:*:*) GUESS=$UNAME_MACHINE-unknown-redox ;; mips:OSF1:*.*) GUESS=mips-dec-osf1 ;; alpha:OSF1:*:*) # Reset EXIT trap before exiting to avoid spurious non-zero exit code. trap '' 0 case $UNAME_RELEASE in *4.0) UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'` ;; *5.*) UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'` ;; esac # According to Compaq, /usr/sbin/psrinfo has been available on # OSF/1 and Tru64 systems produced since 1995. I hope that # covers most systems running today. This code pipes the CPU # types through head -n 1, so we only detect the type of CPU 0. ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^ The alpha \(.*\) processor.*$/\1/p' | head -n 1` case $ALPHA_CPU_TYPE in "EV4 (21064)") UNAME_MACHINE=alpha ;; "EV4.5 (21064)") UNAME_MACHINE=alpha ;; "LCA4 (21066/21068)") UNAME_MACHINE=alpha ;; "EV5 (21164)") UNAME_MACHINE=alphaev5 ;; "EV5.6 (21164A)") UNAME_MACHINE=alphaev56 ;; "EV5.6 (21164PC)") UNAME_MACHINE=alphapca56 ;; "EV5.7 (21164PC)") UNAME_MACHINE=alphapca57 ;; "EV6 (21264)") UNAME_MACHINE=alphaev6 ;; "EV6.7 (21264A)") UNAME_MACHINE=alphaev67 ;; "EV6.8CB (21264C)") UNAME_MACHINE=alphaev68 ;; "EV6.8AL (21264B)") UNAME_MACHINE=alphaev68 ;; "EV6.8CX (21264D)") UNAME_MACHINE=alphaev68 ;; "EV6.9A (21264/EV69A)") UNAME_MACHINE=alphaev69 ;; "EV7 (21364)") UNAME_MACHINE=alphaev7 ;; "EV7.9 (21364A)") UNAME_MACHINE=alphaev79 ;; esac # A Pn.n version is a patched version. # A Vn.n version is a released version. # A Tn.n version is a released field test version. # A Xn.n version is an unreleased experimental baselevel. # 1.2 uses "1.2" for uname -r. OSF_REL=`echo "$UNAME_RELEASE" | sed -e 's/^[PVTX]//' | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz` GUESS=$UNAME_MACHINE-dec-osf$OSF_REL ;; Amiga*:UNIX_System_V:4.0:*) GUESS=m68k-unknown-sysv4 ;; *:[Aa]miga[Oo][Ss]:*:*) GUESS=$UNAME_MACHINE-unknown-amigaos ;; *:[Mm]orph[Oo][Ss]:*:*) GUESS=$UNAME_MACHINE-unknown-morphos ;; *:OS/390:*:*) GUESS=i370-ibm-openedition ;; *:z/VM:*:*) GUESS=s390-ibm-zvmoe ;; *:OS400:*:*) GUESS=powerpc-ibm-os400 ;; arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*) GUESS=arm-acorn-riscix$UNAME_RELEASE ;; arm*:riscos:*:*|arm*:RISCOS:*:*) GUESS=arm-unknown-riscos ;; SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*) GUESS=hppa1.1-hitachi-hiuxmpp ;; Pyramid*:OSx*:*:* | MIS*:OSx*:*:* | MIS*:SMP_DC-OSx*:*:*) # akee@wpdis03.wpafb.af.mil (Earle F. Ake) contributed MIS and NILE. case `(/bin/universe) 2>/dev/null` in att) GUESS=pyramid-pyramid-sysv3 ;; *) GUESS=pyramid-pyramid-bsd ;; esac ;; NILE*:*:*:dcosx) GUESS=pyramid-pyramid-svr4 ;; DRS?6000:unix:4.0:6*) GUESS=sparc-icl-nx6 ;; DRS?6000:UNIX_SV:4.2*:7* | DRS?6000:isis:4.2*:7*) case `/usr/bin/uname -p` in sparc) GUESS=sparc-icl-nx7 ;; esac ;; s390x:SunOS:*:*) SUN_REL=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*//'` GUESS=$UNAME_MACHINE-ibm-solaris2$SUN_REL ;; sun4H:SunOS:5.*:*) SUN_REL=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*//'` GUESS=sparc-hal-solaris2$SUN_REL ;; sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*) SUN_REL=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*//'` GUESS=sparc-sun-solaris2$SUN_REL ;; i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*) GUESS=i386-pc-auroraux$UNAME_RELEASE ;; i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*) set_cc_for_build SUN_ARCH=i386 # If there is a compiler, see if it is configured for 64-bit objects. # Note that the Sun cc does not turn __LP64__ into 1 like gcc does. # This test works for both compilers. if test "$CC_FOR_BUILD" != no_compiler_found; then if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \ (CCOPTS="" $CC_FOR_BUILD -m64 -E - 2>/dev/null) | \ grep IS_64BIT_ARCH >/dev/null then SUN_ARCH=x86_64 fi fi SUN_REL=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*//'` GUESS=$SUN_ARCH-pc-solaris2$SUN_REL ;; sun4*:SunOS:6*:*) # According to config.sub, this is the proper way to canonicalize # SunOS6. Hard to guess exactly what SunOS6 will be like, but # it's likely to be more like Solaris than SunOS4. SUN_REL=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*//'` GUESS=sparc-sun-solaris3$SUN_REL ;; sun4*:SunOS:*:*) case `/usr/bin/arch -k` in Series*|S4*) UNAME_RELEASE=`uname -v` ;; esac # Japanese Language versions have a version number like '4.1.3-JL'. SUN_REL=`echo "$UNAME_RELEASE" | sed -e 's/-/_/'` GUESS=sparc-sun-sunos$SUN_REL ;; sun3*:SunOS:*:*) GUESS=m68k-sun-sunos$UNAME_RELEASE ;; sun*:*:4.2BSD:*) UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null` test "x$UNAME_RELEASE" = x && UNAME_RELEASE=3 case `/bin/arch` in sun3) GUESS=m68k-sun-sunos$UNAME_RELEASE ;; sun4) GUESS=sparc-sun-sunos$UNAME_RELEASE ;; esac ;; aushp:SunOS:*:*) GUESS=sparc-auspex-sunos$UNAME_RELEASE ;; # The situation for MiNT is a little confusing. The machine name # can be virtually everything (everything which is not # "atarist" or "atariste" at least should have a processor # > m68000). The system name ranges from "MiNT" over "FreeMiNT" # to the lowercase version "mint" (or "freemint"). Finally # the system name "TOS" denotes a system which is actually not # MiNT. But MiNT is downward compatible to TOS, so this should # be no problem. atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*) GUESS=m68k-atari-mint$UNAME_RELEASE ;; atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*) GUESS=m68k-atari-mint$UNAME_RELEASE ;; *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*) GUESS=m68k-atari-mint$UNAME_RELEASE ;; milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*) GUESS=m68k-milan-mint$UNAME_RELEASE ;; hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*) GUESS=m68k-hades-mint$UNAME_RELEASE ;; *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*) GUESS=m68k-unknown-mint$UNAME_RELEASE ;; m68k:machten:*:*) GUESS=m68k-apple-machten$UNAME_RELEASE ;; powerpc:machten:*:*) GUESS=powerpc-apple-machten$UNAME_RELEASE ;; RISC*:Mach:*:*) GUESS=mips-dec-mach_bsd4.3 ;; RISC*:ULTRIX:*:*) GUESS=mips-dec-ultrix$UNAME_RELEASE ;; VAX*:ULTRIX*:*:*) GUESS=vax-dec-ultrix$UNAME_RELEASE ;; 2020:CLIX:*:* | 2430:CLIX:*:*) GUESS=clipper-intergraph-clix$UNAME_RELEASE ;; mips:*:*:UMIPS | mips:*:*:RISCos) set_cc_for_build sed 's/^ //' << EOF > "$dummy.c" #ifdef __cplusplus #include /* for printf() prototype */ int main (int argc, char *argv[]) { #else int main (argc, argv) int argc; char *argv[]; { #endif #if defined (host_mips) && defined (MIPSEB) #if defined (SYSTYPE_SYSV) printf ("mips-mips-riscos%ssysv\\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_SVR4) printf ("mips-mips-riscos%ssvr4\\n", argv[1]); exit (0); #endif #if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD) printf ("mips-mips-riscos%sbsd\\n", argv[1]); exit (0); #endif #endif exit (-1); } EOF $CC_FOR_BUILD -o "$dummy" "$dummy.c" && dummyarg=`echo "$UNAME_RELEASE" | sed -n 's/\([0-9]*\).*/\1/p'` && SYSTEM_NAME=`"$dummy" "$dummyarg"` && { echo "$SYSTEM_NAME"; exit; } GUESS=mips-mips-riscos$UNAME_RELEASE ;; Motorola:PowerMAX_OS:*:*) GUESS=powerpc-motorola-powermax ;; Motorola:*:4.3:PL8-*) GUESS=powerpc-harris-powermax ;; Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*) GUESS=powerpc-harris-powermax ;; Night_Hawk:Power_UNIX:*:*) GUESS=powerpc-harris-powerunix ;; m88k:CX/UX:7*:*) GUESS=m88k-harris-cxux7 ;; m88k:*:4*:R4*) GUESS=m88k-motorola-sysv4 ;; m88k:*:3*:R3*) GUESS=m88k-motorola-sysv3 ;; AViiON:dgux:*:*) # DG/UX returns AViiON for all architectures UNAME_PROCESSOR=`/usr/bin/uname -p` if test "$UNAME_PROCESSOR" = mc88100 || test "$UNAME_PROCESSOR" = mc88110 then if test "$TARGET_BINARY_INTERFACE"x = m88kdguxelfx || \ test "$TARGET_BINARY_INTERFACE"x = x then GUESS=m88k-dg-dgux$UNAME_RELEASE else GUESS=m88k-dg-dguxbcs$UNAME_RELEASE fi else GUESS=i586-dg-dgux$UNAME_RELEASE fi ;; M88*:DolphinOS:*:*) # DolphinOS (SVR3) GUESS=m88k-dolphin-sysv3 ;; M88*:*:R3*:*) # Delta 88k system running SVR3 GUESS=m88k-motorola-sysv3 ;; XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3) GUESS=m88k-tektronix-sysv3 ;; Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD) GUESS=m68k-tektronix-bsd ;; *:IRIX*:*:*) IRIX_REL=`echo "$UNAME_RELEASE" | sed -e 's/-/_/g'` GUESS=mips-sgi-irix$IRIX_REL ;; ????????:AIX?:[12].1:2) # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX. GUESS=romp-ibm-aix # uname -m gives an 8 hex-code CPU id ;; # Note that: echo "'`uname -s`'" gives 'AIX ' i*86:AIX:*:*) GUESS=i386-ibm-aix ;; ia64:AIX:*:*) if test -x /usr/bin/oslevel ; then IBM_REV=`/usr/bin/oslevel` else IBM_REV=$UNAME_VERSION.$UNAME_RELEASE fi GUESS=$UNAME_MACHINE-ibm-aix$IBM_REV ;; *:AIX:2:3) if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then set_cc_for_build sed 's/^ //' << EOF > "$dummy.c" #include int main () { if (!__power_pc()) exit(1); puts("powerpc-ibm-aix3.2.5"); exit(0); } EOF if $CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=`"$dummy"` then GUESS=$SYSTEM_NAME else GUESS=rs6000-ibm-aix3.2.5 fi elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then GUESS=rs6000-ibm-aix3.2.4 else GUESS=rs6000-ibm-aix3.2 fi ;; *:AIX:*:[4567]) IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'` if /usr/sbin/lsattr -El "$IBM_CPU_ID" | grep ' POWER' >/dev/null 2>&1; then IBM_ARCH=rs6000 else IBM_ARCH=powerpc fi if test -x /usr/bin/lslpp ; then IBM_REV=`/usr/bin/lslpp -Lqc bos.rte.libc | \ awk -F: '{ print $3 }' | sed s/[0-9]*$/0/` else IBM_REV=$UNAME_VERSION.$UNAME_RELEASE fi GUESS=$IBM_ARCH-ibm-aix$IBM_REV ;; *:AIX:*:*) GUESS=rs6000-ibm-aix ;; ibmrt:4.4BSD:*|romp-ibm:4.4BSD:*) GUESS=romp-ibm-bsd4.4 ;; ibmrt:*BSD:*|romp-ibm:BSD:*) # covers RT/PC BSD and GUESS=romp-ibm-bsd$UNAME_RELEASE # 4.3 with uname added to ;; # report: romp-ibm BSD 4.3 *:BOSX:*:*) GUESS=rs6000-bull-bosx ;; DPX/2?00:B.O.S.:*:*) GUESS=m68k-bull-sysv3 ;; 9000/[34]??:4.3bsd:1.*:*) GUESS=m68k-hp-bsd ;; hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*) GUESS=m68k-hp-bsd4.4 ;; 9000/[34678]??:HP-UX:*:*) HPUX_REV=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*.[0B]*//'` case $UNAME_MACHINE in 9000/31?) HP_ARCH=m68000 ;; 9000/[34]??) HP_ARCH=m68k ;; 9000/[678][0-9][0-9]) if test -x /usr/bin/getconf; then sc_cpu_version=`/usr/bin/getconf SC_CPU_VERSION 2>/dev/null` sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null` case $sc_cpu_version in 523) HP_ARCH=hppa1.0 ;; # CPU_PA_RISC1_0 528) HP_ARCH=hppa1.1 ;; # CPU_PA_RISC1_1 532) # CPU_PA_RISC2_0 case $sc_kernel_bits in 32) HP_ARCH=hppa2.0n ;; 64) HP_ARCH=hppa2.0w ;; '') HP_ARCH=hppa2.0 ;; # HP-UX 10.20 esac ;; esac fi if test "$HP_ARCH" = ""; then set_cc_for_build sed 's/^ //' << EOF > "$dummy.c" #define _HPUX_SOURCE #include #include int main () { #if defined(_SC_KERNEL_BITS) long bits = sysconf(_SC_KERNEL_BITS); #endif long cpu = sysconf (_SC_CPU_VERSION); switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0"); break; case CPU_PA_RISC1_1: puts ("hppa1.1"); break; case CPU_PA_RISC2_0: #if defined(_SC_KERNEL_BITS) switch (bits) { case 64: puts ("hppa2.0w"); break; case 32: puts ("hppa2.0n"); break; default: puts ("hppa2.0"); break; } break; #else /* !defined(_SC_KERNEL_BITS) */ puts ("hppa2.0"); break; #endif default: puts ("hppa1.0"); break; } exit (0); } EOF (CCOPTS="" $CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null) && HP_ARCH=`"$dummy"` test -z "$HP_ARCH" && HP_ARCH=hppa fi ;; esac if test "$HP_ARCH" = hppa2.0w then set_cc_for_build # hppa2.0w-hp-hpux* has a 64-bit kernel and a compiler generating # 32-bit code. hppa64-hp-hpux* has the same kernel and a compiler # generating 64-bit code. GNU and HP use different nomenclature: # # $ CC_FOR_BUILD=cc ./config.guess # => hppa2.0w-hp-hpux11.23 # $ CC_FOR_BUILD="cc +DA2.0w" ./config.guess # => hppa64-hp-hpux11.23 if echo __LP64__ | (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | grep -q __LP64__ then HP_ARCH=hppa2.0w else HP_ARCH=hppa64 fi fi GUESS=$HP_ARCH-hp-hpux$HPUX_REV ;; ia64:HP-UX:*:*) HPUX_REV=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*.[0B]*//'` GUESS=ia64-hp-hpux$HPUX_REV ;; 3050*:HI-UX:*:*) set_cc_for_build sed 's/^ //' << EOF > "$dummy.c" #include int main () { long cpu = sysconf (_SC_CPU_VERSION); /* The order matters, because CPU_IS_HP_MC68K erroneously returns true for CPU_PA_RISC1_0. CPU_IS_PA_RISC returns correct results, however. */ if (CPU_IS_PA_RISC (cpu)) { switch (cpu) { case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break; case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break; case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break; default: puts ("hppa-hitachi-hiuxwe2"); break; } } else if (CPU_IS_HP_MC68K (cpu)) puts ("m68k-hitachi-hiuxwe2"); else puts ("unknown-hitachi-hiuxwe2"); exit (0); } EOF $CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=`"$dummy"` && { echo "$SYSTEM_NAME"; exit; } GUESS=unknown-hitachi-hiuxwe2 ;; 9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:*) GUESS=hppa1.1-hp-bsd ;; 9000/8??:4.3bsd:*:*) GUESS=hppa1.0-hp-bsd ;; *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*) GUESS=hppa1.0-hp-mpeix ;; hp7??:OSF1:*:* | hp8?[79]:OSF1:*:*) GUESS=hppa1.1-hp-osf ;; hp8??:OSF1:*:*) GUESS=hppa1.0-hp-osf ;; i*86:OSF1:*:*) if test -x /usr/sbin/sysversion ; then GUESS=$UNAME_MACHINE-unknown-osf1mk else GUESS=$UNAME_MACHINE-unknown-osf1 fi ;; parisc*:Lites*:*:*) GUESS=hppa1.1-hp-lites ;; C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*) GUESS=c1-convex-bsd ;; C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*) if getsysinfo -f scalar_acc then echo c32-convex-bsd else echo c2-convex-bsd fi exit ;; C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*) GUESS=c34-convex-bsd ;; C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*) GUESS=c38-convex-bsd ;; C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*) GUESS=c4-convex-bsd ;; CRAY*Y-MP:*:*:*) CRAY_REL=`echo "$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'` GUESS=ymp-cray-unicos$CRAY_REL ;; CRAY*[A-Z]90:*:*:*) echo "$UNAME_MACHINE"-cray-unicos"$UNAME_RELEASE" \ | sed -e 's/CRAY.*\([A-Z]90\)/\1/' \ -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \ -e 's/\.[^.]*$/.X/' exit ;; CRAY*TS:*:*:*) CRAY_REL=`echo "$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'` GUESS=t90-cray-unicos$CRAY_REL ;; CRAY*T3E:*:*:*) CRAY_REL=`echo "$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'` GUESS=alphaev5-cray-unicosmk$CRAY_REL ;; CRAY*SV1:*:*:*) CRAY_REL=`echo "$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'` GUESS=sv1-cray-unicos$CRAY_REL ;; *:UNICOS/mp:*:*) CRAY_REL=`echo "$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'` GUESS=craynv-cray-unicosmp$CRAY_REL ;; F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*) FUJITSU_PROC=`uname -m | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz` FUJITSU_SYS=`uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///'` FUJITSU_REL=`echo "$UNAME_RELEASE" | sed -e 's/ /_/'` GUESS=${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL} ;; 5000:UNIX_System_V:4.*:*) FUJITSU_SYS=`uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///'` FUJITSU_REL=`echo "$UNAME_RELEASE" | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/ /_/'` GUESS=sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL} ;; i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*) GUESS=$UNAME_MACHINE-pc-bsdi$UNAME_RELEASE ;; sparc*:BSD/OS:*:*) GUESS=sparc-unknown-bsdi$UNAME_RELEASE ;; *:BSD/OS:*:*) GUESS=$UNAME_MACHINE-unknown-bsdi$UNAME_RELEASE ;; arm:FreeBSD:*:*) UNAME_PROCESSOR=`uname -p` set_cc_for_build if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ARM_PCS_VFP then FREEBSD_REL=`echo "$UNAME_RELEASE" | sed -e 's/[-(].*//'` GUESS=$UNAME_PROCESSOR-unknown-freebsd$FREEBSD_REL-gnueabi else FREEBSD_REL=`echo "$UNAME_RELEASE" | sed -e 's/[-(].*//'` GUESS=$UNAME_PROCESSOR-unknown-freebsd$FREEBSD_REL-gnueabihf fi ;; *:FreeBSD:*:*) UNAME_PROCESSOR=`uname -p` case $UNAME_PROCESSOR in amd64) UNAME_PROCESSOR=x86_64 ;; i386) UNAME_PROCESSOR=i586 ;; esac FREEBSD_REL=`echo "$UNAME_RELEASE" | sed -e 's/[-(].*//'` GUESS=$UNAME_PROCESSOR-unknown-freebsd$FREEBSD_REL ;; i*:CYGWIN*:*) GUESS=$UNAME_MACHINE-pc-cygwin ;; *:MINGW64*:*) GUESS=$UNAME_MACHINE-pc-mingw64 ;; *:MINGW*:*) GUESS=$UNAME_MACHINE-pc-mingw32 ;; *:MSYS*:*) GUESS=$UNAME_MACHINE-pc-msys ;; i*:PW*:*) GUESS=$UNAME_MACHINE-pc-pw32 ;; *:SerenityOS:*:*) GUESS=$UNAME_MACHINE-pc-serenity ;; *:Interix*:*) case $UNAME_MACHINE in x86) GUESS=i586-pc-interix$UNAME_RELEASE ;; authenticamd | genuineintel | EM64T) GUESS=x86_64-unknown-interix$UNAME_RELEASE ;; IA64) GUESS=ia64-unknown-interix$UNAME_RELEASE ;; esac ;; i*:UWIN*:*) GUESS=$UNAME_MACHINE-pc-uwin ;; amd64:CYGWIN*:*:* | x86_64:CYGWIN*:*:*) GUESS=x86_64-pc-cygwin ;; prep*:SunOS:5.*:*) SUN_REL=`echo "$UNAME_RELEASE" | sed -e 's/[^.]*//'` GUESS=powerpcle-unknown-solaris2$SUN_REL ;; *:GNU:*:*) # the GNU system GNU_ARCH=`echo "$UNAME_MACHINE" | sed -e 's,[-/].*$,,'` GNU_REL=`echo "$UNAME_RELEASE" | sed -e 's,/.*$,,'` GUESS=$GNU_ARCH-unknown-$LIBC$GNU_REL ;; *:GNU/*:*:*) # other systems with GNU libc and userland GNU_SYS=`echo "$UNAME_SYSTEM" | sed 's,^[^/]*/,,' | tr "[:upper:]" "[:lower:]"` GNU_REL=`echo "$UNAME_RELEASE" | sed -e 's/[-(].*//'` GUESS=$UNAME_MACHINE-unknown-$GNU_SYS$GNU_REL-$LIBC ;; x86_64:[Mm]anagarm:*:*|i?86:[Mm]anagarm:*:*) GUESS="$UNAME_MACHINE-pc-managarm-mlibc" ;; *:[Mm]anagarm:*:*) GUESS="$UNAME_MACHINE-unknown-managarm-mlibc" ;; *:Minix:*:*) GUESS=$UNAME_MACHINE-unknown-minix ;; aarch64:Linux:*:*) set_cc_for_build CPU=$UNAME_MACHINE LIBCABI=$LIBC if test "$CC_FOR_BUILD" != no_compiler_found; then ABI=64 sed 's/^ //' << EOF > "$dummy.c" #ifdef __ARM_EABI__ #ifdef __ARM_PCS_VFP ABI=eabihf #else ABI=eabi #endif #endif EOF cc_set_abi=`$CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^ABI' | sed 's, ,,g'` eval "$cc_set_abi" case $ABI in eabi | eabihf) CPU=armv8l; LIBCABI=$LIBC$ABI ;; esac fi GUESS=$CPU-unknown-linux-$LIBCABI ;; aarch64_be:Linux:*:*) UNAME_MACHINE=aarch64_be GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; alpha:Linux:*:*) case `sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' /proc/cpuinfo 2>/dev/null` in EV5) UNAME_MACHINE=alphaev5 ;; EV56) UNAME_MACHINE=alphaev56 ;; PCA56) UNAME_MACHINE=alphapca56 ;; PCA57) UNAME_MACHINE=alphapca56 ;; EV6) UNAME_MACHINE=alphaev6 ;; EV67) UNAME_MACHINE=alphaev67 ;; EV68*) UNAME_MACHINE=alphaev68 ;; esac objdump --private-headers /bin/sh | grep -q ld.so.1 if test "$?" = 0 ; then LIBC=gnulibc1 ; fi GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; arc:Linux:*:* | arceb:Linux:*:* | arc32:Linux:*:* | arc64:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; arm*:Linux:*:*) set_cc_for_build if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ARM_EABI__ then GUESS=$UNAME_MACHINE-unknown-linux-$LIBC else if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \ | grep -q __ARM_PCS_VFP then GUESS=$UNAME_MACHINE-unknown-linux-${LIBC}eabi else GUESS=$UNAME_MACHINE-unknown-linux-${LIBC}eabihf fi fi ;; avr32*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; cris:Linux:*:*) GUESS=$UNAME_MACHINE-axis-linux-$LIBC ;; crisv32:Linux:*:*) GUESS=$UNAME_MACHINE-axis-linux-$LIBC ;; e2k:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; frv:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; hexagon:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; i*86:Linux:*:*) GUESS=$UNAME_MACHINE-pc-linux-$LIBC ;; ia64:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; k1om:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; kvx:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; kvx:cos:*:*) GUESS=$UNAME_MACHINE-unknown-cos ;; kvx:mbr:*:*) GUESS=$UNAME_MACHINE-unknown-mbr ;; loongarch32:Linux:*:* | loongarch64:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; m32r*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; m68*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; mips:Linux:*:* | mips64:Linux:*:*) set_cc_for_build IS_GLIBC=0 test x"${LIBC}" = xgnu && IS_GLIBC=1 sed 's/^ //' << EOF > "$dummy.c" #undef CPU #undef mips #undef mipsel #undef mips64 #undef mips64el #if ${IS_GLIBC} && defined(_ABI64) LIBCABI=gnuabi64 #else #if ${IS_GLIBC} && defined(_ABIN32) LIBCABI=gnuabin32 #else LIBCABI=${LIBC} #endif #endif #if ${IS_GLIBC} && defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6 CPU=mipsisa64r6 #else #if ${IS_GLIBC} && !defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6 CPU=mipsisa32r6 #else #if defined(__mips64) CPU=mips64 #else CPU=mips #endif #endif #endif #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL) MIPS_ENDIAN=el #else #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB) MIPS_ENDIAN= #else MIPS_ENDIAN= #endif #endif EOF cc_set_vars=`$CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^CPU\|^MIPS_ENDIAN\|^LIBCABI'` eval "$cc_set_vars" test "x$CPU" != x && { echo "$CPU${MIPS_ENDIAN}-unknown-linux-$LIBCABI"; exit; } ;; mips64el:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; openrisc*:Linux:*:*) GUESS=or1k-unknown-linux-$LIBC ;; or32:Linux:*:* | or1k*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; padre:Linux:*:*) GUESS=sparc-unknown-linux-$LIBC ;; parisc64:Linux:*:* | hppa64:Linux:*:*) GUESS=hppa64-unknown-linux-$LIBC ;; parisc:Linux:*:* | hppa:Linux:*:*) # Look for CPU level case `grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2` in PA7*) GUESS=hppa1.1-unknown-linux-$LIBC ;; PA8*) GUESS=hppa2.0-unknown-linux-$LIBC ;; *) GUESS=hppa-unknown-linux-$LIBC ;; esac ;; ppc64:Linux:*:*) GUESS=powerpc64-unknown-linux-$LIBC ;; ppc:Linux:*:*) GUESS=powerpc-unknown-linux-$LIBC ;; ppc64le:Linux:*:*) GUESS=powerpc64le-unknown-linux-$LIBC ;; ppcle:Linux:*:*) GUESS=powerpcle-unknown-linux-$LIBC ;; riscv32:Linux:*:* | riscv32be:Linux:*:* | riscv64:Linux:*:* | riscv64be:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; s390:Linux:*:* | s390x:Linux:*:*) GUESS=$UNAME_MACHINE-ibm-linux-$LIBC ;; sh64*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; sh*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; sparc:Linux:*:* | sparc64:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; tile*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; vax:Linux:*:*) GUESS=$UNAME_MACHINE-dec-linux-$LIBC ;; x86_64:Linux:*:*) set_cc_for_build CPU=$UNAME_MACHINE LIBCABI=$LIBC if test "$CC_FOR_BUILD" != no_compiler_found; then ABI=64 sed 's/^ //' << EOF > "$dummy.c" #ifdef __i386__ ABI=x86 #else #ifdef __ILP32__ ABI=x32 #endif #endif EOF cc_set_abi=`$CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^ABI' | sed 's, ,,g'` eval "$cc_set_abi" case $ABI in x86) CPU=i686 ;; x32) LIBCABI=${LIBC}x32 ;; esac fi GUESS=$CPU-pc-linux-$LIBCABI ;; xtensa*:Linux:*:*) GUESS=$UNAME_MACHINE-unknown-linux-$LIBC ;; i*86:DYNIX/ptx:4*:*) # ptx 4.0 does uname -s correctly, with DYNIX/ptx in there. # earlier versions are messed up and put the nodename in both # sysname and nodename. GUESS=i386-sequent-sysv4 ;; i*86:UNIX_SV:4.2MP:2.*) # Unixware is an offshoot of SVR4, but it has its own version # number series starting with 2... # I am not positive that other SVR4 systems won't match this, # I just have to hope. -- rms. # Use sysv4.2uw... so that sysv4* matches it. GUESS=$UNAME_MACHINE-pc-sysv4.2uw$UNAME_VERSION ;; i*86:OS/2:*:*) # If we were able to find 'uname', then EMX Unix compatibility # is probably installed. GUESS=$UNAME_MACHINE-pc-os2-emx ;; i*86:XTS-300:*:STOP) GUESS=$UNAME_MACHINE-unknown-stop ;; i*86:atheos:*:*) GUESS=$UNAME_MACHINE-unknown-atheos ;; i*86:syllable:*:*) GUESS=$UNAME_MACHINE-pc-syllable ;; i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*) GUESS=i386-unknown-lynxos$UNAME_RELEASE ;; i*86:*DOS:*:*) GUESS=$UNAME_MACHINE-pc-msdosdjgpp ;; i*86:*:4.*:*) UNAME_REL=`echo "$UNAME_RELEASE" | sed 's/\/MP$//'` if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then GUESS=$UNAME_MACHINE-univel-sysv$UNAME_REL else GUESS=$UNAME_MACHINE-pc-sysv$UNAME_REL fi ;; i*86:*:5:[678]*) # UnixWare 7.x, OpenUNIX and OpenServer 6. case `/bin/uname -X | grep "^Machine"` in *486*) UNAME_MACHINE=i486 ;; *Pentium) UNAME_MACHINE=i586 ;; *Pent*|*Celeron) UNAME_MACHINE=i686 ;; esac GUESS=$UNAME_MACHINE-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION} ;; i*86:*:3.2:*) if test -f /usr/options/cb.name; then UNAME_REL=`sed -n 's/.*Version //p' /dev/null >/dev/null ; then UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` (/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486 (/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \ && UNAME_MACHINE=i586 (/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \ && UNAME_MACHINE=i686 (/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \ && UNAME_MACHINE=i686 GUESS=$UNAME_MACHINE-pc-sco$UNAME_REL else GUESS=$UNAME_MACHINE-pc-sysv32 fi ;; pc:*:*:*) # Left here for compatibility: # uname -m prints for DJGPP always 'pc', but it prints nothing about # the processor, so we play safe by assuming i586. # Note: whatever this is, it MUST be the same as what config.sub # prints for the "djgpp" host, or else GDB configure will decide that # this is a cross-build. GUESS=i586-pc-msdosdjgpp ;; Intel:Mach:3*:*) GUESS=i386-pc-mach3 ;; paragon:*:*:*) GUESS=i860-intel-osf1 ;; i860:*:4.*:*) # i860-SVR4 if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then GUESS=i860-stardent-sysv$UNAME_RELEASE # Stardent Vistra i860-SVR4 else # Add other i860-SVR4 vendors below as they are discovered. GUESS=i860-unknown-sysv$UNAME_RELEASE # Unknown i860-SVR4 fi ;; mini*:CTIX:SYS*5:*) # "miniframe" GUESS=m68010-convergent-sysv ;; mc68k:UNIX:SYSTEM5:3.51m) GUESS=m68k-convergent-sysv ;; M680?0:D-NIX:5.3:*) GUESS=m68k-diab-dnix ;; M68*:*:R3V[5678]*:*) test -r /sysV68 && { echo 'm68k-motorola-sysv'; exit; } ;; 3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0) OS_REL='' test -r /etc/.relid \ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4.3"$OS_REL"; exit; } /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;; 3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*) /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4; exit; } ;; NCR*:*:4.2:* | MPRAS*:*:4.2:*) OS_REL='.3' test -r /etc/.relid \ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ && { echo i486-ncr-sysv4.3"$OS_REL"; exit; } /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } /bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \ && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;; m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*) GUESS=m68k-unknown-lynxos$UNAME_RELEASE ;; mc68030:UNIX_System_V:4.*:*) GUESS=m68k-atari-sysv4 ;; TSUNAMI:LynxOS:2.*:*) GUESS=sparc-unknown-lynxos$UNAME_RELEASE ;; rs6000:LynxOS:2.*:*) GUESS=rs6000-unknown-lynxos$UNAME_RELEASE ;; PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*) GUESS=powerpc-unknown-lynxos$UNAME_RELEASE ;; SM[BE]S:UNIX_SV:*:*) GUESS=mips-dde-sysv$UNAME_RELEASE ;; RM*:ReliantUNIX-*:*:*) GUESS=mips-sni-sysv4 ;; RM*:SINIX-*:*:*) GUESS=mips-sni-sysv4 ;; *:SINIX-*:*:*) if uname -p 2>/dev/null >/dev/null ; then UNAME_MACHINE=`(uname -p) 2>/dev/null` GUESS=$UNAME_MACHINE-sni-sysv4 else GUESS=ns32k-sni-sysv fi ;; PENTIUM:*:4.0*:*) # Unisys 'ClearPath HMP IX 4000' SVR4/MP effort # says GUESS=i586-unisys-sysv4 ;; *:UNIX_System_V:4*:FTX*) # From Gerald Hewes . # How about differentiating between stratus architectures? -djm GUESS=hppa1.1-stratus-sysv4 ;; *:*:*:FTX*) # From seanf@swdc.stratus.com. GUESS=i860-stratus-sysv4 ;; i*86:VOS:*:*) # From Paul.Green@stratus.com. GUESS=$UNAME_MACHINE-stratus-vos ;; *:VOS:*:*) # From Paul.Green@stratus.com. GUESS=hppa1.1-stratus-vos ;; mc68*:A/UX:*:*) GUESS=m68k-apple-aux$UNAME_RELEASE ;; news*:NEWS-OS:6*:*) GUESS=mips-sony-newsos6 ;; R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*) if test -d /usr/nec; then GUESS=mips-nec-sysv$UNAME_RELEASE else GUESS=mips-unknown-sysv$UNAME_RELEASE fi ;; BeBox:BeOS:*:*) # BeOS running on hardware made by Be, PPC only. GUESS=powerpc-be-beos ;; BeMac:BeOS:*:*) # BeOS running on Mac or Mac clone, PPC only. GUESS=powerpc-apple-beos ;; BePC:BeOS:*:*) # BeOS running on Intel PC compatible. GUESS=i586-pc-beos ;; BePC:Haiku:*:*) # Haiku running on Intel PC compatible. GUESS=i586-pc-haiku ;; ppc:Haiku:*:*) # Haiku running on Apple PowerPC GUESS=powerpc-apple-haiku ;; *:Haiku:*:*) # Haiku modern gcc (not bound by BeOS compat) GUESS=$UNAME_MACHINE-unknown-haiku ;; SX-4:SUPER-UX:*:*) GUESS=sx4-nec-superux$UNAME_RELEASE ;; SX-5:SUPER-UX:*:*) GUESS=sx5-nec-superux$UNAME_RELEASE ;; SX-6:SUPER-UX:*:*) GUESS=sx6-nec-superux$UNAME_RELEASE ;; SX-7:SUPER-UX:*:*) GUESS=sx7-nec-superux$UNAME_RELEASE ;; SX-8:SUPER-UX:*:*) GUESS=sx8-nec-superux$UNAME_RELEASE ;; SX-8R:SUPER-UX:*:*) GUESS=sx8r-nec-superux$UNAME_RELEASE ;; SX-ACE:SUPER-UX:*:*) GUESS=sxace-nec-superux$UNAME_RELEASE ;; Power*:Rhapsody:*:*) GUESS=powerpc-apple-rhapsody$UNAME_RELEASE ;; *:Rhapsody:*:*) GUESS=$UNAME_MACHINE-apple-rhapsody$UNAME_RELEASE ;; arm64:Darwin:*:*) GUESS=aarch64-apple-darwin$UNAME_RELEASE ;; *:Darwin:*:*) UNAME_PROCESSOR=`uname -p` case $UNAME_PROCESSOR in unknown) UNAME_PROCESSOR=powerpc ;; esac if command -v xcode-select > /dev/null 2> /dev/null && \ ! xcode-select --print-path > /dev/null 2> /dev/null ; then # Avoid executing cc if there is no toolchain installed as # cc will be a stub that puts up a graphical alert # prompting the user to install developer tools. CC_FOR_BUILD=no_compiler_found else set_cc_for_build fi if test "$CC_FOR_BUILD" != no_compiler_found; then if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \ (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \ grep IS_64BIT_ARCH >/dev/null then case $UNAME_PROCESSOR in i386) UNAME_PROCESSOR=x86_64 ;; powerpc) UNAME_PROCESSOR=powerpc64 ;; esac fi # On 10.4-10.6 one might compile for PowerPC via gcc -arch ppc if (echo '#ifdef __POWERPC__'; echo IS_PPC; echo '#endif') | \ (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \ grep IS_PPC >/dev/null then UNAME_PROCESSOR=powerpc fi elif test "$UNAME_PROCESSOR" = i386 ; then # uname -m returns i386 or x86_64 UNAME_PROCESSOR=$UNAME_MACHINE fi GUESS=$UNAME_PROCESSOR-apple-darwin$UNAME_RELEASE ;; *:procnto*:*:* | *:QNX:[0123456789]*:*) UNAME_PROCESSOR=`uname -p` if test "$UNAME_PROCESSOR" = x86; then UNAME_PROCESSOR=i386 UNAME_MACHINE=pc fi GUESS=$UNAME_PROCESSOR-$UNAME_MACHINE-nto-qnx$UNAME_RELEASE ;; *:QNX:*:4*) GUESS=i386-pc-qnx ;; NEO-*:NONSTOP_KERNEL:*:*) GUESS=neo-tandem-nsk$UNAME_RELEASE ;; NSE-*:NONSTOP_KERNEL:*:*) GUESS=nse-tandem-nsk$UNAME_RELEASE ;; NSR-*:NONSTOP_KERNEL:*:*) GUESS=nsr-tandem-nsk$UNAME_RELEASE ;; NSV-*:NONSTOP_KERNEL:*:*) GUESS=nsv-tandem-nsk$UNAME_RELEASE ;; NSX-*:NONSTOP_KERNEL:*:*) GUESS=nsx-tandem-nsk$UNAME_RELEASE ;; *:NonStop-UX:*:*) GUESS=mips-compaq-nonstopux ;; BS2000:POSIX*:*:*) GUESS=bs2000-siemens-sysv ;; DS/*:UNIX_System_V:*:*) GUESS=$UNAME_MACHINE-$UNAME_SYSTEM-$UNAME_RELEASE ;; *:Plan9:*:*) # "uname -m" is not consistent, so use $cputype instead. 386 # is converted to i386 for consistency with other x86 # operating systems. if test "${cputype-}" = 386; then UNAME_MACHINE=i386 elif test "x${cputype-}" != x; then UNAME_MACHINE=$cputype fi GUESS=$UNAME_MACHINE-unknown-plan9 ;; *:TOPS-10:*:*) GUESS=pdp10-unknown-tops10 ;; *:TENEX:*:*) GUESS=pdp10-unknown-tenex ;; KS10:TOPS-20:*:* | KL10:TOPS-20:*:* | TYPE4:TOPS-20:*:*) GUESS=pdp10-dec-tops20 ;; XKL-1:TOPS-20:*:* | TYPE5:TOPS-20:*:*) GUESS=pdp10-xkl-tops20 ;; *:TOPS-20:*:*) GUESS=pdp10-unknown-tops20 ;; *:ITS:*:*) GUESS=pdp10-unknown-its ;; SEI:*:*:SEIUX) GUESS=mips-sei-seiux$UNAME_RELEASE ;; *:DragonFly:*:*) DRAGONFLY_REL=`echo "$UNAME_RELEASE" | sed -e 's/[-(].*//'` GUESS=$UNAME_MACHINE-unknown-dragonfly$DRAGONFLY_REL ;; *:*VMS:*:*) UNAME_MACHINE=`(uname -p) 2>/dev/null` case $UNAME_MACHINE in A*) GUESS=alpha-dec-vms ;; I*) GUESS=ia64-dec-vms ;; V*) GUESS=vax-dec-vms ;; esac ;; *:XENIX:*:SysV) GUESS=i386-pc-xenix ;; i*86:skyos:*:*) SKYOS_REL=`echo "$UNAME_RELEASE" | sed -e 's/ .*$//'` GUESS=$UNAME_MACHINE-pc-skyos$SKYOS_REL ;; i*86:rdos:*:*) GUESS=$UNAME_MACHINE-pc-rdos ;; i*86:Fiwix:*:*) GUESS=$UNAME_MACHINE-pc-fiwix ;; *:AROS:*:*) GUESS=$UNAME_MACHINE-unknown-aros ;; x86_64:VMkernel:*:*) GUESS=$UNAME_MACHINE-unknown-esx ;; amd64:Isilon\ OneFS:*:*) GUESS=x86_64-unknown-onefs ;; *:Unleashed:*:*) GUESS=$UNAME_MACHINE-unknown-unleashed$UNAME_RELEASE ;; x86_64:[Ii]ronclad:*:*|i?86:[Ii]ronclad:*:*) GUESS=$UNAME_MACHINE-pc-ironclad-mlibc ;; *:[Ii]ronclad:*:*) GUESS=$UNAME_MACHINE-unknown-ironclad-mlibc ;; esac # Do we have a guess based on uname results? if test "x$GUESS" != x; then echo "$GUESS" exit fi # No uname command or uname output not recognized. set_cc_for_build cat > "$dummy.c" < #include #endif #if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__) #if defined (vax) || defined (__vax) || defined (__vax__) || defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__) #include #if defined(_SIZE_T_) || defined(SIGLOST) #include #endif #endif #endif int main () { #if defined (sony) #if defined (MIPSEB) /* BFD wants "bsd" instead of "newsos". Perhaps BFD should be changed, I don't know.... */ printf ("mips-sony-bsd\n"); exit (0); #else #include printf ("m68k-sony-newsos%s\n", #ifdef NEWSOS4 "4" #else "" #endif ); exit (0); #endif #endif #if defined (NeXT) #if !defined (__ARCHITECTURE__) #define __ARCHITECTURE__ "m68k" #endif int version; version=`(hostinfo | sed -n 's/.*NeXT Mach \([0-9]*\).*/\1/p') 2>/dev/null`; if (version < 4) printf ("%s-next-nextstep%d\n", __ARCHITECTURE__, version); else printf ("%s-next-openstep%d\n", __ARCHITECTURE__, version); exit (0); #endif #if defined (MULTIMAX) || defined (n16) #if defined (UMAXV) printf ("ns32k-encore-sysv\n"); exit (0); #else #if defined (CMU) printf ("ns32k-encore-mach\n"); exit (0); #else printf ("ns32k-encore-bsd\n"); exit (0); #endif #endif #endif #if defined (__386BSD__) printf ("i386-pc-bsd\n"); exit (0); #endif #if defined (sequent) #if defined (i386) printf ("i386-sequent-dynix\n"); exit (0); #endif #if defined (ns32000) printf ("ns32k-sequent-dynix\n"); exit (0); #endif #endif #if defined (_SEQUENT_) struct utsname un; uname(&un); if (strncmp(un.version, "V2", 2) == 0) { printf ("i386-sequent-ptx2\n"); exit (0); } if (strncmp(un.version, "V1", 2) == 0) { /* XXX is V1 correct? */ printf ("i386-sequent-ptx1\n"); exit (0); } printf ("i386-sequent-ptx\n"); exit (0); #endif #if defined (vax) #if !defined (ultrix) #include #if defined (BSD) #if BSD == 43 printf ("vax-dec-bsd4.3\n"); exit (0); #else #if BSD == 199006 printf ("vax-dec-bsd4.3reno\n"); exit (0); #else printf ("vax-dec-bsd\n"); exit (0); #endif #endif #else printf ("vax-dec-bsd\n"); exit (0); #endif #else #if defined(_SIZE_T_) || defined(SIGLOST) struct utsname un; uname (&un); printf ("vax-dec-ultrix%s\n", un.release); exit (0); #else printf ("vax-dec-ultrix\n"); exit (0); #endif #endif #endif #if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__) #if defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__) #if defined(_SIZE_T_) || defined(SIGLOST) struct utsname *un; uname (&un); printf ("mips-dec-ultrix%s\n", un.release); exit (0); #else printf ("mips-dec-ultrix\n"); exit (0); #endif #endif #endif #if defined (alliant) && defined (i860) printf ("i860-alliant-bsd\n"); exit (0); #endif exit (1); } EOF $CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null && SYSTEM_NAME=`"$dummy"` && { echo "$SYSTEM_NAME"; exit; } # Apollos put the system type in the environment. test -d /usr/apollo && { echo "$ISP-apollo-$SYSTYPE"; exit; } echo "$0: unable to guess system type" >&2 case $UNAME_MACHINE:$UNAME_SYSTEM in mips:Linux | mips64:Linux) # If we got here on MIPS GNU/Linux, output extra information. cat >&2 <&2 <&2 </dev/null || echo unknown` uname -r = `(uname -r) 2>/dev/null || echo unknown` uname -s = `(uname -s) 2>/dev/null || echo unknown` uname -v = `(uname -v) 2>/dev/null || echo unknown` /usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null` /bin/uname -X = `(/bin/uname -X) 2>/dev/null` hostinfo = `(hostinfo) 2>/dev/null` /bin/universe = `(/bin/universe) 2>/dev/null` /usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null` /bin/arch = `(/bin/arch) 2>/dev/null` /usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null` /usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null` UNAME_MACHINE = "$UNAME_MACHINE" UNAME_RELEASE = "$UNAME_RELEASE" UNAME_SYSTEM = "$UNAME_SYSTEM" UNAME_VERSION = "$UNAME_VERSION" EOF fi exit 1 # Local variables: # eval: (add-hook 'before-save-hook 'time-stamp nil t) # time-stamp-start: "timestamp='" # time-stamp-format: "%Y-%02m-%02d" # time-stamp-end: "'" # End: netcdf-1.0.20/src/config.h.in0000644000000000000000000000132315205072111012566 0ustar00/* config.h.in. Generated from configure.ac by autoheader. */ #include "undef-ah-octave.h" /* macro for alternative Octave symbols */ #undef OV_ISCELL /* macro for alternative Octave symbols */ #undef OV_ISEMPTY /* Define to the address where bug reports for this package should be sent. */ #undef PACKAGE_BUGREPORT /* Define to the full name of this package. */ #undef PACKAGE_NAME /* Define to the full name and version of this package. */ #undef PACKAGE_STRING /* Define to the one symbol short name of this package. */ #undef PACKAGE_TARNAME /* Define to the home page for this package. */ #undef PACKAGE_URL /* Define to the version of this package. */ #undef PACKAGE_VERSION #include "oct-alt-includes.h" netcdf-1.0.20/src/config.sub0000755000000000000000000011600715205072111012534 0ustar00#! /bin/sh # Configuration validation subroutine script. # Copyright 1992-2025 Free Software Foundation, Inc. # shellcheck disable=SC2006,SC2268,SC2162 # see below for rationale timestamp='2025-07-10' # This file is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, see . # # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that # program. This Exception is an additional permission under section 7 # of the GNU General Public License, version 3 ("GPLv3"). # Please send patches to . # # Configuration subroutine to validate and canonicalize a configuration type. # Supply the specified configuration type as an argument. # If it is invalid, we print an error message on stderr and exit with code 1. # Otherwise, we print the canonical config type on stdout and succeed. # You can get the latest version of this script from: # https://git.savannah.gnu.org/cgit/config.git/plain/config.sub # This file is supposed to be the same for all GNU packages # and recognize all the CPU types, system types and aliases # that are meaningful with *any* GNU software. # Each package is responsible for reporting which valid configurations # it does not support. The user should be able to distinguish # a failure to support a valid configuration from a meaningless # configuration. # The goal of this file is to map all the various variations of a given # machine specification into a single specification in the form: # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM # or in some cases, the newer four-part form: # CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM # It is wrong to echo any other type of specification. # The "shellcheck disable" line above the timestamp inhibits complaints # about features and limitations of the classic Bourne shell that were # superseded or lifted in POSIX. However, this script identifies a wide # variety of pre-POSIX systems that do not have POSIX shells at all, and # even some reasonably current systems (Solaris 10 as case-in-point) still # have a pre-POSIX /bin/sh. me=`echo "$0" | sed -e 's,.*/,,'` usage="\ Usage: $0 [OPTION] CPU-MFR-OPSYS or ALIAS Canonicalize a configuration name. Options: -h, --help print this help, then exit -t, --time-stamp print date of last modification, then exit -v, --version print version number, then exit Report bugs and patches to ." version="\ GNU config.sub ($timestamp) Copyright 1992-2025 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE." help=" Try '$me --help' for more information." # Parse command line while test $# -gt 0 ; do case $1 in --time-stamp | --time* | -t ) echo "$timestamp" ; exit ;; --version | -v ) echo "$version" ; exit ;; --help | --h* | -h ) echo "$usage"; exit ;; -- ) # Stop option processing shift; break ;; - ) # Use stdin as input. break ;; -* ) echo "$me: invalid option $1$help" >&2 exit 1 ;; *local*) # First pass through any local machine types. echo "$1" exit ;; * ) break ;; esac done case $# in 0) echo "$me: missing argument$help" >&2 exit 1;; 1) ;; *) echo "$me: too many arguments$help" >&2 exit 1;; esac # Split fields of configuration type saved_IFS=$IFS IFS="-" read field1 field2 field3 field4 <&2 exit 1 ;; *-*-*-*) basic_machine=$field1-$field2 basic_os=$field3-$field4 ;; *-*-*) # Ambiguous whether COMPANY is present, or skipped and KERNEL-OS is two # parts maybe_os=$field2-$field3 case $maybe_os in cloudabi*-eabi* \ | kfreebsd*-gnu* \ | knetbsd*-gnu* \ | kopensolaris*-gnu* \ | ironclad-* \ | linux-* \ | managarm-* \ | netbsd*-eabi* \ | netbsd*-gnu* \ | nto-qnx* \ | os2-emx* \ | rtmk-nova* \ | storm-chaos* \ | uclinux-gnu* \ | uclinux-uclibc* \ | windows-* ) basic_machine=$field1 basic_os=$maybe_os ;; 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tock* | zephyr*) basic_machine=$field1-unknown basic_os=$field2 ;; *) basic_machine=$field1 basic_os=$field2 ;; esac ;; esac ;; *) # Convert single-component short-hands not valid as part of # multi-component configurations. case $field1 in 386bsd) basic_machine=i386-pc basic_os=bsd ;; a29khif) basic_machine=a29k-amd basic_os=udi ;; adobe68k) basic_machine=m68010-adobe basic_os=scout ;; alliant) basic_machine=fx80-alliant basic_os= ;; altos | altos3068) basic_machine=m68k-altos basic_os= ;; am29k) basic_machine=a29k-none basic_os=bsd ;; amdahl) basic_machine=580-amdahl basic_os=sysv ;; amiga) basic_machine=m68k-unknown basic_os= ;; amigaos | amigados) basic_machine=m68k-unknown basic_os=amigaos ;; amigaunix | amix) basic_machine=m68k-unknown basic_os=sysv4 ;; apollo68) basic_machine=m68k-apollo basic_os=sysv ;; apollo68bsd) basic_machine=m68k-apollo basic_os=bsd ;; aros) basic_machine=i386-pc basic_os=aros ;; aux) basic_machine=m68k-apple basic_os=aux ;; balance) basic_machine=ns32k-sequent basic_os=dynix ;; blackfin) basic_machine=bfin-unknown basic_os=linux ;; cegcc) basic_machine=arm-unknown basic_os=cegcc ;; cray) basic_machine=j90-cray basic_os=unicos ;; crds | unos) basic_machine=m68k-crds basic_os= ;; da30) basic_machine=m68k-da30 basic_os= ;; decstation | pmax | pmin | dec3100 | decstatn) basic_machine=mips-dec basic_os= ;; delta88) basic_machine=m88k-motorola basic_os=sysv3 ;; dicos) basic_machine=i686-pc basic_os=dicos ;; djgpp) basic_machine=i586-pc basic_os=msdosdjgpp ;; ebmon29k) basic_machine=a29k-amd basic_os=ebmon ;; es1800 | OSE68k | ose68k | ose | OSE) basic_machine=m68k-ericsson basic_os=ose ;; gmicro) basic_machine=tron-gmicro basic_os=sysv ;; go32) basic_machine=i386-pc basic_os=go32 ;; h8300hms) basic_machine=h8300-hitachi basic_os=hms ;; h8300xray) basic_machine=h8300-hitachi basic_os=xray ;; h8500hms) basic_machine=h8500-hitachi basic_os=hms ;; harris) basic_machine=m88k-harris basic_os=sysv3 ;; hp300 | hp300hpux) basic_machine=m68k-hp basic_os=hpux ;; hp300bsd) basic_machine=m68k-hp basic_os=bsd ;; hppaosf) basic_machine=hppa1.1-hp basic_os=osf ;; hppro) basic_machine=hppa1.1-hp basic_os=proelf ;; i386mach) basic_machine=i386-mach basic_os=mach ;; isi68 | isi) basic_machine=m68k-isi basic_os=sysv ;; m68knommu) basic_machine=m68k-unknown basic_os=linux ;; magnum | m3230) basic_machine=mips-mips basic_os=sysv ;; merlin) basic_machine=ns32k-utek basic_os=sysv ;; mingw64) basic_machine=x86_64-pc basic_os=mingw64 ;; mingw32) basic_machine=i686-pc basic_os=mingw32 ;; mingw32ce) basic_machine=arm-unknown basic_os=mingw32ce ;; monitor) basic_machine=m68k-rom68k basic_os=coff ;; morphos) basic_machine=powerpc-unknown basic_os=morphos ;; moxiebox) basic_machine=moxie-unknown basic_os=moxiebox ;; msdos) basic_machine=i386-pc basic_os=msdos ;; msys) basic_machine=i686-pc basic_os=msys ;; mvs) basic_machine=i370-ibm basic_os=mvs ;; nacl) basic_machine=le32-unknown basic_os=nacl ;; ncr3000) basic_machine=i486-ncr basic_os=sysv4 ;; netbsd386) basic_machine=i386-pc basic_os=netbsd ;; netwinder) basic_machine=armv4l-rebel basic_os=linux ;; news | news700 | news800 | news900) basic_machine=m68k-sony basic_os=newsos ;; news1000) basic_machine=m68030-sony basic_os=newsos ;; necv70) basic_machine=v70-nec basic_os=sysv ;; nh3000) basic_machine=m68k-harris basic_os=cxux ;; nh[45]000) basic_machine=m88k-harris basic_os=cxux ;; nindy960) basic_machine=i960-intel basic_os=nindy ;; mon960) basic_machine=i960-intel basic_os=mon960 ;; nonstopux) basic_machine=mips-compaq basic_os=nonstopux ;; os400) basic_machine=powerpc-ibm basic_os=os400 ;; OSE68000 | ose68000) basic_machine=m68000-ericsson basic_os=ose ;; os68k) basic_machine=m68k-none basic_os=os68k ;; paragon) basic_machine=i860-intel basic_os=osf ;; parisc) basic_machine=hppa-unknown basic_os=linux ;; psp) basic_machine=mipsallegrexel-sony basic_os=psp ;; pw32) basic_machine=i586-unknown basic_os=pw32 ;; rdos | rdos64) basic_machine=x86_64-pc basic_os=rdos ;; rdos32) basic_machine=i386-pc basic_os=rdos ;; rom68k) basic_machine=m68k-rom68k basic_os=coff ;; sa29200) basic_machine=a29k-amd basic_os=udi ;; sei) basic_machine=mips-sei basic_os=seiux ;; sequent) basic_machine=i386-sequent basic_os= ;; sps7) basic_machine=m68k-bull basic_os=sysv2 ;; st2000) basic_machine=m68k-tandem basic_os= ;; stratus) basic_machine=i860-stratus basic_os=sysv4 ;; sun2) basic_machine=m68000-sun basic_os= ;; sun2os3) basic_machine=m68000-sun basic_os=sunos3 ;; sun2os4) basic_machine=m68000-sun basic_os=sunos4 ;; sun3) basic_machine=m68k-sun basic_os= ;; sun3os3) basic_machine=m68k-sun basic_os=sunos3 ;; sun3os4) basic_machine=m68k-sun basic_os=sunos4 ;; sun4) basic_machine=sparc-sun basic_os= ;; sun4os3) basic_machine=sparc-sun basic_os=sunos3 ;; sun4os4) basic_machine=sparc-sun basic_os=sunos4 ;; sun4sol2) basic_machine=sparc-sun basic_os=solaris2 ;; sun386 | sun386i | roadrunner) basic_machine=i386-sun basic_os= ;; sv1) basic_machine=sv1-cray basic_os=unicos ;; symmetry) basic_machine=i386-sequent basic_os=dynix ;; t3e) basic_machine=alphaev5-cray basic_os=unicos ;; t90) basic_machine=t90-cray basic_os=unicos ;; 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Did you disable netcdf4 features?) fi dnl ********************************************************** # Checks for octave depreciated symbols # Simple symbol alternatives of different Octave versions. save_altsyms_CXX="$CXX" save_altsyms_CXXFLAGS="$CXXFLAGS" save_altsyms_LDFLAGS="$LDFLAGS" save_altsyms_LIBS="$LIBS" OCTINCLUDEDIR="${OCTINCLUDEDIR:-`$MKOCTFILE -p OCTINCLUDEDIR`}/.." OCTLIBDIR=${OCTLIBDIR:-`$MKOCTFILE -p OCTLIBDIR`} if test "X${IGNORE_MINGW_PATH_MODIFICATION}" == "X"; then MSYSTEM="${MSYSTEM}" else MSYSTEM="none" fi case X$MSYSTEM in XMINGW64*) OCTAVE_HOME=`${MKOCTFILE} -p OCTAVE_HOME | $SED 's,\\\\,/,g'` # change \ to / and replace octave home part with mingw part OCTINCLUDEDIR=`echo $OCTINCLUDEDIR | $SED -e 's,\\\\,/,g' -e "s,${OCTAVE_HOME},/mingw64,g"` OCTLIBDIR=`echo $OCTLIBDIR | $SED -e 's,\\\\,/,g' -e "s,${OCTAVE_HOME},/mingw64,g"` ;; XMINGW32*) OCTAVE_HOME=`${MKOCTFILE} -p OCTAVE_HOME | $SED 's,\\\\,/,g'` # change \ to / and replace octave home part with mingw part OCTINCLUDEDIR=`echo $OCTINCLUDEDIR | $SED -e 's,\\\\,/,g' -e "s,${OCTAVE_HOME},/mingw32,g"` OCTLIBDIR=`echo $OCTLIBDIR | $SED -e 's,\\\\,/,g -e "s,${OCTAVE_HOME},/mingw32,g"'` ;; *) ;; esac CXX=`${MKOCTFILE} -p CXX` CXXFLAGS="-I$OCTINCLUDEDIR $CXXFLAGS" LDFLAGS="-L$OCTLIBDIR $LDFLAGS" LIBS="-loctinterp $LIBS" OF_OCTAVE_LIST_ALT_SYMS([ [dnl [is_cell], [iscell], [[octave_value ().iscell ();]], [OV_ISCELL], [], [] ], [dnl [is_empty], [isempty], [[octave_value ().isempty ();]], [OV_ISEMPTY], [], [] ] ],[oct-alt-includes.h]) CXX=$save_altsyms_CXX CXXFLAGS=$save_altsyms_CXXFLAGS LDFLAGS=$save_altsyms_LDFLAGS LIBS=$save_altsyms_LIBS dnl ********************************************************** AC_CONFIG_FILES([Makefile]) AC_OUTPUT AC_MSG_RESULT([ octave-forge is configured with mkoctfile: $MKOCTFILE nc-config: $NC_CONFIG netCDF compiler flags: $NETCDF_CPPFLAGS netCDF libraries: $NETCDF_LIBS ]) netcdf-1.0.20/src/m4/0000755000000000000000000000000015205072111011064 5ustar00netcdf-1.0.20/src/m4/octave-forge.m40000644000000000000000000000576015205072111013717 0ustar00# Copyright (C) 2017-2018 Olaf Till # Modifications to print what is searching for by JohnD # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, see . # arguments of OF_OCTAVE_ALT_SYMS (see also description of # OF_OCTAVE_LIST_ALT_SYMS below): # # $1: symbol version 1 # $2: symbol version 2 # $3: test for symbol version 2 # $4: macro name to access alternative symbols # $5: include directives for symbol version 1 # $6: include directives for symbol version 2 # (a list of lists of args 1--6 is $1 of OF_OCTAVE_LIST_ALT_SYMS) # $7: name of generated include file with alternatives of Octave headers # (arg7 is $2 of OF_OCTAVE_LIST_ALT_SYMS) AC_DEFUN([OF_OCTAVE_ALT_SYMS], [ AC_MSG_CHECKING([$1 or $2]) AC_COMPILE_IFELSE( [AC_LANG_PROGRAM([[#include ] $6], [$3])], [AC_DEFINE($4, [[$2]], [macro for alternative Octave symbols]) AC_MSG_RESULT([$2]) echo '$6' >> $7], [AC_DEFINE($4, [[$1]], [macro for alternative Octave symbols]) AC_MSG_RESULT([$1]) echo '$5' >> $7] ) ]) # OF_OCTAVE_LIST_ALT_SYMS is called in the following way: # # OF_OCTAVE_LIST_ALT_SYMS([ # [dnl # [old_octave_symbol], # [new_octave_symbol], # [[compilation test] # [for new_octave_symbol]], # [NAME_OF_GENERATED_MACRO____WILL_EXPAND_TO_OLD_OR_NEW_SYMBOL], # [[include directives] # [except #include ] # [necessary to compile with old_octave_symbol]], # [[include directives] # [except #include ] # [nessary to compile with new_octave_symbol] # [and to compile the test]] # ], # # ... further such lists as the above # # ], # # [name-of-header-file-for-alternative-octave-iclude-directives.h]) # # # This file should be put into src/m4/, and the line # # AC_CONFIG_MACRO_DIRS([m4]) # # should be put into src/configure.ac. The package should use # autoheader to generate config.h.in (src/bootstrap should contain the # lines 'aclocal', 'autoconf', and 'autoheader -f'). Package code # should include config.h and use the generated macros to access the # alternative symbols of Octave. An example of a call to # OF_OCTAVE_LIST_ALT_SYMS in src/configure.ac is available together # with this file. AC_DEFUN([OF_OCTAVE_LIST_ALT_SYMS], [ echo '/* generated by configure */' > $2 m4_foreach([it], [$1], [m4_apply([OF_OCTAVE_ALT_SYMS], [it, $2])]) AH_BOTTOM([#include "$2"]) ]) netcdf-1.0.20/src/netcdf_constants.awk0000644000000000000000000000436015205072111014612 0ustar00# Copyright (C) 2013-2022 Alexander Barth # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; If not, see . # Generate the list of NetCDF constants based on the header file netcdf.h BEGIN { print "// generated by netcdf_constants.awk"; } /#define[ \t]+NC_[0-9a-zA-Z_]*[ \t]+/ { constant=$2; ov = constant; # NC_INDEPENDENT and NC_COLLECTIVE are no longer defined # in netcdf 4.3.1 if ($0 ~ /.*internally.*/ || \ constant == "NC_TURN_OFF_LOGGING" || \ constant == "NC_INDEPENDENT" || \ constant == "NC_COLLECTIVE" \ ) { next; } if (constant ~ /NC_.*_BYTE/) { ov = "octave_int8(" constant ")"; } else if (constant ~ /NC_.*_UBYTE/) { ov = "octave_uint8(" constant ")"; } else if (constant ~ /NC_.*_SHORT/) { ov = "octave_int16(" constant ")"; } else if (constant ~ /NC_.*_USHORT/) { ov = "octave_uint16(" constant ")"; } else if (constant ~ /NC_.*_INT/) { ov = "octave_int32(" constant ")"; } else if (constant ~ /NC_.*_UINT/) { ov = "octave_uint32(" constant ")"; } else if (constant ~ /NC_.*_INT64/) { ov = "octave_int64(" constant ")"; } else if (constant ~ /NC_.*_UINT64/) { ov = "octave_uint64(" constant ")"; } else if (constant ~ /NC_.*_CHAR/) { ov = "(char)" constant; } else if (constant ~ /NC_.*_STRING/) { ov = "std::string(" constant ")"; } else if (constant ~ /NC_.*_FLOAT/) { ov = "(float)" constant; } else if (constant ~ /NC_.*_STRING/) { ov = "(double)" constant; } printf " netcdf_constants[\"%s\"] = octave_value(%s);\n",constant,ov; } netcdf-1.0.20/src/undef-ah-octave.h0000644000000000000000000000070615205072111013666 0ustar00/* To be included at the top of config.h (by autoheader). Avoid warnings for redefining AH-generated preprocessor symbols of Octave. */ #ifdef PACKAGE_BUGREPORT #undef PACKAGE_BUGREPORT #endif #ifdef PACKAGE_NAME #undef PACKAGE_NAME #endif #ifdef PACKAGE_STRING #undef PACKAGE_STRING #endif #ifdef PACKAGE_TARNAME #undef PACKAGE_TARNAME #endif #ifdef PACKAGE_URL #undef PACKAGE_URL #endif #ifdef PACKAGE_VERSION #undef PACKAGE_VERSION #endif